mRNA_M-pyrifera_M_contig82522.19288.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82522.19288.1
Unique NamemRNA_M-pyrifera_M_contig82522.19288.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: UPI001FB1523E (uncharacterized protein LOC124912142 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1523E)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-8
Identity = 35/99 (35.35%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G   +V+  HG  +   ++T+ ++A A+ E G +  RFD +    G+++   F YG Y+ +VEDL++VV+  + G      LK + +LGHSKGGN ++L
Sbjct:   36 GSKELVILCHGFRSTKETTTISNLAVALAEEGISSFRFDFS--GNGESEGT-FQYGHYHREVEDLRSVVQFFNGGN-----LKASTILGHSKGGNVVLL 126          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A833R8C4_9POAL (Alpha/beta hydrolase family n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R8C4_9POAL)

HSP 1 Score: 60.5 bits (145), Expect = 1.460e-8
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G N +V+  HG  ++  S T+C +  A+   G +  RFD +    G+++   F YG Y ++VEDL+TVV    +         V  +LGHSKGGN +IL
Sbjct:  160 GSNELVILCHGFRSSKESKTICHLGDALASKGISSFRFDFS--GNGESEG-NFEYGNYYKEVEDLRTVVRFFRE-----QNRDVTAILGHSKGGNVVIL 250          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A1Y1II24_KLENI (Esterase/lipase/thioesterase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II24_KLENI)

HSP 1 Score: 58.9 bits (141), Expect = 3.470e-8
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   13 VVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            VV+  HG L++  SST+ +I   + EAGF   RFD +    G++   EF +G Y ++VEDL++VV  +     G+    V  +LGHSKGG+ +IL
Sbjct:   33 VVILCHGFLSSKRSSTLQTIVPGLVEAGFGVLRFDFS--GNGES-GGEFEFGNYWKEVEDLRSVVGFVR----GVKKRSVKAVLGHSKGGDVVIL 120          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A0V0HUD7_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HUD7_SOLCH)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-7
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G   +V+  HG  ++ + +T+ ++AGA+ + G +  RFD      G+++ + F YG Y  + +DL +VVE  +        LKV  +LGHSKGGN ++L
Sbjct:   30 GSMEIVVLCHGFRSSKDFNTMVNLAGALEKEGISVFRFDFP--GNGESEGS-FQYGNYRSEADDLHSVVEYFNGAN-----LKVTAVLGHSKGGNVVLL 120          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A1W0VY50_SORBI (Hydrolase_4 domain-containing protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A1W0VY50_SORBI)

HSP 1 Score: 57.0 bits (136), Expect = 1.830e-7
Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G N +V+  HG +++ N S +  +A A+ + G +  RFD +     + Q   F YG Y ++ +DL +VV  L+          +A ++GHSKGG+ +IL
Sbjct:   37 GSNKIVVLCHGFISSKNDSLILDLAAALTKEGISVFRFDFSGNGESEGQ---FEYGNYRKEADDLHSVVLYLYQ-----KSYDIAAVVGHSKGGDVVIL 127          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: B3VW20_POPTN (Esterase/lipase/thioesterase (Fragment) n=18 Tax=Populus tremula TaxID=113636 RepID=B3VW20_POPTN)

HSP 1 Score: 55.5 bits (132), Expect = 3.620e-7
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G N +V+  HG  +   +  + ++A A+ + G +  RFD A    G+++ + F+YG Y  + +DL+ V+E         P   V+ +LGHSKGG+ ++L
Sbjct:   49 GSNDIVILCHGFCSTKENDIMVNLAKALEKEGISAFRFDLA--GNGESEGS-FSYGNYRREADDLRAVIEHFRGAS---PSRGVSAILGHSKGGDVVLL 141          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A803MRP8_CHEQI (Hydrolase_4 domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MRP8_CHEQI)

HSP 1 Score: 55.1 bits (131), Expect = 7.630e-7
Identity = 35/99 (35.35%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G   VV+  HG  ++    T+ +I GA+ + G +  RFD +    G++  A F YG Y ++ EDL+ VV+  + G + +    V+ +LGHSKGGN ++L
Sbjct:   30 GSKDVVVVCHGFKSSKEQETMVNICGALEKEGISAYRFDFS--GNGESDGA-FAYGNYMKEAEDLRAVVKNFN-GANRI----VSAILGHSKGGNVVLL 120          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: UPI000B78E3F7 (uncharacterized protein LOC110683064 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78E3F7)

HSP 1 Score: 55.5 bits (132), Expect = 7.880e-7
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G   VV+  HG  ++    T+  I GA+ + G +  RFD +    G +  A F YG Y ++ ED++ VV+  H G + +    V+ +LGHSKGGN ++L
Sbjct:   82 GSKDVVVVCHGFKSSKEQETMVDICGALEKEGISAYRFDFS--GNGDSDGA-FAYGNYVKEAEDIRAVVKHFH-GANRI----VSAILGHSKGGNVVLL 172          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A803MGF1_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MGF1_CHEQI)

HSP 1 Score: 55.5 bits (132), Expect = 8.830e-7
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G   VV+  HG  ++    T+  I GA+ + G +  RFD +    G +  A F YG Y ++ ED++ VV+  H G + +    V+ +LGHSKGGN ++L
Sbjct:  312 GSKDVVVVCHGFKSSKEQETMVDICGALEKEGISAYRFDFS--GNGDSDGA-FAYGNYVKEAEDIRAVVKHFH-GANRI----VSAILGHSKGGNVVLL 402          
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Match: A0A0D3BHV0_BRAOL (Hydrolase_4 domain-containing protein n=10 Tax=Brassica TaxID=3705 RepID=A0A0D3BHV0_BRAOL)

HSP 1 Score: 55.1 bits (131), Expect = 9.100e-7
Identity = 32/99 (32.32%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQNAEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL 297
            G   VV+  HG  +N N + + S+A A+ + G +  RFD +    G+++ + F +G YN + +DL++V++   +  + + PL    +LGHSKGG+ ++L
Sbjct:   35 GSTEVVVLCHGFRSNKNDTVMKSVAAAIEKEGISAFRFDFS--GNGESEGS-FYFGNYNHEADDLRSVIQHFSN-FNRVVPL----ILGHSKGGDVVLL 125          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82522.19288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FB1523E1.400e-835.35uncharacterized protein LOC124912142 n=1 Tax=Impat... [more]
A0A833R8C4_9POAL1.460e-836.36Alpha/beta hydrolase family n=1 Tax=Carex littleda... [more]
A0A1Y1II24_KLENI3.470e-840.00Esterase/lipase/thioesterase family protein n=1 Ta... [more]
A0A0V0HUD7_SOLCH1.020e-734.34Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A1W0VY50_SORBI1.830e-732.32Hydrolase_4 domain-containing protein n=3 Tax=Andr... [more]
B3VW20_POPTN3.620e-731.31Esterase/lipase/thioesterase (Fragment) n=18 Tax=P... [more]
A0A803MRP8_CHEQI7.630e-735.35Hydrolase_4 domain-containing protein n=1 Tax=Chen... [more]
UPI000B78E3F77.880e-735.35uncharacterized protein LOC110683064 n=1 Tax=Cheno... [more]
A0A803MGF1_CHEQI8.830e-735.35Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A0D3BHV0_BRAOL9.100e-732.32Hydrolase_4 domain-containing protein n=10 Tax=Bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82522contigM-pyrifera_M_contig82522:615..911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_004630.1
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.8747957-CDS-M-pyrifera_M_contig82522:614..9111622816731.8747957-CDS-M-pyrifera_M_contig82522:614..911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82522 615..911 +
1692278145.654661-CDS-M-pyrifera_M_contig82522:614..9111692278145.654661-CDS-M-pyrifera_M_contig82522:614..911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82522 615..911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82522.19288.1prot_M-pyrifera_M_contig82522.19288.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82522 615..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82522.19288.1

>prot_M-pyrifera_M_contig82522.19288.1 ID=prot_M-pyrifera_M_contig82522.19288.1|Name=mRNA_M-pyrifera_M_contig82522.19288.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
GKNVVVLFSHGLLNNANSSTVCSIAGAVREAGFACCRFDSATTSTGQTQN
AEFTYGGYNEDVEDLQTVVEALHDGMDGLPPLKVACLLGHSKGGNNIIL
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mRNA from alignment at M-pyrifera_M_contig82522:615..911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82522.19288.1 ID=mRNA_M-pyrifera_M_contig82522.19288.1|Name=mRNA_M-pyrifera_M_contig82522.19288.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig82522:615..911+ (Macrocystis pyrifera P11B4 male)
GGCAAGAATGTTGTCGTGCTCTTCAGTCACGGCCTTTTGAACAACGCAAA CTCCTCAACAGTGTGCAGCATTGCCGGTGCGGTGCGCGAGGCTGGCTTCG CGTGCTGCCGCTTTGACAGCGCGACCACGAGCACAGGACAGACACAGAAC GCAGAGTTCACCTACGGGGGCTACAACGAAGATGTGGAAGACTTGCAGAC CGTTGTGGAGGCACTGCACGACGGCATGGACGGCCTCCCTCCCTTGAAGG TGGCTTGTCTCCTTGGGCACAGTAAGGGCGGTAACAACATCATCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82522:615..911+

>mRNA_M-pyrifera_M_contig82522.19288.1 ID=mRNA_M-pyrifera_M_contig82522.19288.1|Name=mRNA_M-pyrifera_M_contig82522.19288.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig82522:615..911+ (Macrocystis pyrifera P11B4 male)
GGCAAGAATGTTGTCGTGCTCTTCAGTCACGGCCTTTTGAACAACGCAAA
CTCCTCAACAGTGTGCAGCATTGCCGGTGCGGTGCGCGAGGCTGGCTTCG
CGTGCTGCCGCTTTGACAGCGCGACCACGAGCACAGGACAGACACAGAAC
GCAGAGTTCACCTACGGGGGCTACAACGAAGATGTGGAAGACTTGCAGAC
CGTTGTGGAGGCACTGCACGACGGCATGGACGGCCTCCCTCCCTTGAAGG
TGGCTTGTCTCCTTGGGCACAGTAAGGGCGGTAACAACATCATCCTGGGC
AAGAATGTTGTCGTGCTCTTCAGTCACGGCCTTTTGAACAACGCAAACTC
CTCAACAGTGTGCAGCATTGCCGGTGCGGTGCGCGAGGCTGGCTTCGCGT
GCTGCCGCTTTGACAGCGCGACCACGAGCACAGGACAGACACAGAACGCA
GAGTTCACCTACGGGGGCTACAACGAAGATGTGGAAGACTTGCAGACCGT
TGTGGAGGCACTGCACGACGGCATGGACGGCCTCCCTCCCTTGAAGGTGG
CTTGTCTCCTTGGGCACAGTAAGGGCGGTAACAACATCATCCTG
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