mRNA_M-pyrifera_M_contig82516.19284.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82516.19284.1
Unique NamemRNA_M-pyrifera_M_contig82516.19284.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: D8LSC2_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC2_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.350e-38
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    4 GLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHGLVSREDSGYADRSFLLHTPEQV 234
            GL+ER LS  LR+FYSSLFTLVMPDFERLRRPGTRADARRSTA+LVAEAHE VH LVSREDSGYADRSFLLHTPEQV
Sbjct:  283 GLQERSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYADRSFLLHTPEQV 359
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.970e-14
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    4 GLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHGLVSREDSGYADR-SFLLHTPEQV 234
            GLE   ++ A+ AFYS+LF+L MP+ ER+R P  +  AR+ ++  +A+AH  +HG++S   +GY D  SFL HTP+QV
Sbjct:  588 GLEAHTVASAMAAFYSALFSLTMPELERVRAPLVKGRARQLSSRQIADAHAHLHGVLSAPAAGYRDAASFLSHTPDQV 665
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.340e-12
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    4 GLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHGLVSREDSGYADRSFLLHTPEQV 234
            GL+   + +A+  FYS++F L +P FERL     R  AR+  A  +A AH++V+ LV    + Y D SFL HTPEQV
Sbjct:  646 GLDAASVERAMLDFYSTIFALAVPSFERLAPLEVREAARKGVAERIANAHQSVYNLVKDPANKYGDSSFLQHTPEQV 722
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.480e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    4 GLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHGLV-SREDSGYADRSF---LLHTPEQV 234
            G++   L  AL +FY SLF+LVMP+F+RL  P  RA AR +TA  +A ++EA +  V  +E SG  + S    LLH P+QV
Sbjct:  555 GMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLRASARNATAQTIANSYEAFYNAVMDKERSGIDEASLKGILLHNPQQV 635
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: A0A7R9UAD7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAD7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.590e-10
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   40 AFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHGLVSREDSGYADRSFLLHTPEQV 234
            AF  +LFT+ +PDFER+  P  +  AR  T   VA+ +  +  +V  E  GYADRSFL+H PEQV
Sbjct:  343 AFNGALFTIFVPDFERITDPDEKNTARVDTMTKVADGYATIWEMVMDEKQGYADRSFLVHAPEQV 407
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: A0A7S3LLI7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLI7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.080e-10
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    4 GLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHGLVSREDSGYADRSF---LLHTPEQV 234
            G++   L  A   FY S+F++VMP+F+RL  P  R  AR STA  +A  +  ++  +S  +SGY+       L+H PEQV
Sbjct:  333 GMDPASLQAAFSKFYQSMFSMVMPEFDRLNNPRLRTTARNSTARSIAMGYVRLYNALSNPESGYSKEELERILVHAPEQV 412
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BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Match: A0A2R5GVE9_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVE9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.170e-7
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    4 GLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEAHEAVHG-LVSREDSGYADR---SFLLHTPEQV 234
            G+    L + L +FY S+F+LVMP+F+RL  P  RA AR +TA  +A  +E  +  L     SGY      + LLH P+QV
Sbjct:  601 GMTLDALREVLDSFYKSMFSLVMPEFDRLSSPRLRASARNATAGAIAATYEQFYATLQDLSRSGYQPAQLSNILLHDPQQV 681
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82516.19284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LSC2_ECTSI1.350e-3889.61Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A836CBI3_9STRA4.970e-1446.15Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2S2C7_9STRA7.340e-1244.16Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2SLV6_9STRA3.480e-1145.68Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7R9UAD7_9STRA1.590e-1047.69Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S3LLI7_9STRA4.080e-1038.75Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A2R5GVE9_9STRA1.170e-740.74Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82516contigM-pyrifera_M_contig82516:201..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.1e-31
Seed eggNOG ortholog2880.D8LSC2
Preferred nameCOG6
KEGG koko:K20293
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.744631-CDS-M-pyrifera_M_contig82516:200..4341622816731.744631-CDS-M-pyrifera_M_contig82516:200..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82516 201..434 +
1692278145.6102076-CDS-M-pyrifera_M_contig82516:200..4341692278145.6102076-CDS-M-pyrifera_M_contig82516:200..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82516 201..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82516.19284.1prot_M-pyrifera_M_contig82516.19284.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82516 201..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82516.19284.1

>prot_M-pyrifera_M_contig82516.19284.1 ID=prot_M-pyrifera_M_contig82516.19284.1|Name=mRNA_M-pyrifera_M_contig82516.19284.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
SGLEERPLSQALRAFYSSLFTLVMPDFERLRRPGTRADARRSTALLVAEA
HEAVHGLVSREDSGYADRSFLLHTPEQV
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mRNA from alignment at M-pyrifera_M_contig82516:201..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82516.19284.1 ID=mRNA_M-pyrifera_M_contig82516.19284.1|Name=mRNA_M-pyrifera_M_contig82516.19284.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig82516:201..434+ (Macrocystis pyrifera P11B4 male)
TCCGGGCTGGAGGAGCGGCCCCTCTCCCAGGCCCTGCGGGCTTTCTACTC
GTCCCTGTTCACCCTGGTCATGCCCGACTTCGAGCGCCTCCGACGGCCGG
GGACGCGGGCCGACGCGAGGCGCAGCACGGCTCTCCTCGTGGCGGAGGCC
CACGAGGCGGTGCACGGGCTGGTATCGAGGGAGGACAGCGGCTACGCCGA
CCGGTCGTTTTTGCTGCACACGCCGGAGCAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82516:201..434+

>mRNA_M-pyrifera_M_contig82516.19284.1 ID=mRNA_M-pyrifera_M_contig82516.19284.1|Name=mRNA_M-pyrifera_M_contig82516.19284.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig82516:201..434+ (Macrocystis pyrifera P11B4 male)
TCCGGGCTGGAGGAGCGGCCCCTCTCCCAGGCCCTGCGGGCTTTCTACTC
GTCCCTGTTCACCCTGGTCATGCCCGACTTCGAGCGCCTCCGACGGCCGG
GGACGCGGGCCGACGCGAGGCGCAGCACGGCTCTCCTCGTGGCGGAGGCC
CACGAGGCGGTGCACGGGCTGGTATCGAGGGAGGACAGCGGCTACGCCGA
CCGGTCGTTTTTGCTGCACACGCCGGAGCAGGTATCCGGGCTGGAGGAGC
GGCCCCTCTCCCAGGCCCTGCGGGCTTTCTACTCGTCCCTGTTCACCCTG
GTCATGCCCGACTTCGAGCGCCTCCGACGGCCGGGGACGCGGGCCGACGC
GAGGCGCAGCACGGCTCTCCTCGTGGCGGAGGCCCACGAGGCGGTGCACG
GGCTGGTATCGAGGGAGGACAGCGGCTACGCCGACCGGTCGTTTTTGCTG
CACACGCCGGAGCAGGTA
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