mRNA_M-pyrifera_M_contig825.19282.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig825.19282.1
Unique NamemRNA_M-pyrifera_M_contig825.19282.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig825.19282.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.480e-22
Identity = 93/297 (31.31%), Postives = 133/297 (44.78%), Query Frame = 3 
Query:  114 VCNARTFLVKVFGFLENAIEQQNDCSALRNTKLHIPTMTLPRTAISWFGDELLKPLQFGLGEWPLKFMLL*RRRTPQRSSAAAQATAW*MAPTAQRH*AS*SSLGAWLSTSRLWLS*LRTVMVWTCATDSWPFLPVLLGGDVPEPRVQVSRRRSPQALDVRAGV*TDG*LAGGV*TELVSSPKTQGVRCRGEEAIAGDPTPPSKGRSKTIAEAGTNQSTLVQVKENGHTVQDRRKLYVVLLKKSTAVVAKGVESVKPETLRHIFATFAAQVEQAARIESGTGFVLGNAETIRLHAVK 1004
            VC A T L  VF F E AIE+Q D + LR  +L +P + +P     WFG   + P++FGLG WPL+FM      T +  +AA                    +LG       L +  + TV V   + D       L    + E        + PQ +                   LV S  ++  + R    + GD         + I E  T ++ L +V + G + QDRR LYV +LKK+TA V+ GV+ V P+T+R I  TF + +  AA I SG G VLGN + +R  AV+
Sbjct:  293 VCGAMTSLQGVFEFFEGAIEKQEDRALLRAARLALPAVAMPGVDDVWFGQRFMAPIRFGLGMWPLRFM------TIEMEAAAIFCVGGNAVLEGGERL---EALGKLEFLGELIVG-VETVAVVMESRDGRVMRHWLTEQGLRELEAWPPECK-PQWM-----------------VALVHSDASKDDQVRPPTVVVGDTW-------QAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVR 554
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BLAST of mRNA_M-pyrifera_M_contig825.19282.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-15
Identity = 64/206 (31.07%), Postives = 95/206 (46.12%), Query Frame = 2 
Query:    2 VRGRLNKSGFEEGFMKLLQSFPKAEKYLMQLHHDRLVGLQR*DLLGQGVRLLGECHRTTKRLQCSSQHQVAHPYDDFTTNRYFLVRGRALEATAVRAWRMAFEVHV-TVEETDAATL-------------------------------FCGGPGNCLVDGPDRAKALGELKFVRGMVVDVETVAFIVENRNGVDMRYGLLAFPAGS 523
             RGRL +SGFEE + KL+++FPKA++Y+  L+ DR    +R  +    V +      TT R++  +           +  R F     A+E  A RA   + ++ + +V   D AT                                FC  P N L++G  R  ALG+ +++  MVV+VETVA IVEN +G D RY +L    GS
Sbjct:  456 TRGRLTESGFEEEYAKLVETFPKAKEYMAYLYKDR----ERWAVYSS-VLVFSAASYTTNRVESMNAQAKRVLNSQASLVRVFKFLSDAIEKQAARAELRSAQLRLPSVSTPDTATYWFGAALTTPCKFALGVWAYKFMMDEVAMCATFCSSPSNALLEGASRDDALGKFEYIGMMVVNVETVAVIVENHDGTDKRYIVLGMTDGS 656
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BLAST of mRNA_M-pyrifera_M_contig825.19282.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.340e-8
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  789 NGHTVQDRRKLYVVLLKKSTAVVAKGVESVKPETLRHIFATFAAQVEQAARIESGTGFVLGNAETIR 989
            N   +QDRR LYV ++K++ A V+ GVE V P+TLR I  TF + +  AARI SG G VLGN + +R
Sbjct:  329 NARAIQDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVR 395
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BLAST of mRNA_M-pyrifera_M_contig825.19282.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.710e-8
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 3 
Query:  114 VCNARTFLVKVFGFLENAIEQQNDCSALRNTKLHIPTMTLPRTAISWFGDELLKPLQFGLGEWPLKFMLL 323
            VC A T L  VF F E AIE+Q D + LR  +L +P + +      WFGD+ +  ++FGLG WP ++M +
Sbjct:  239 VCGAMTSLQGVFEFFEGAIEKQEDRALLRTARLALPAVAMAGVDDVWFGDKFMALIRFGLGMWPFRYMTM 308
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig825.19282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE4.480e-2231.31MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JJG6_9PHAE1.200e-1531.07SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JU34_9PHAE2.340e-850.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE3.710e-841.43SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig825contigM-pyrifera_M_contig825:7585..9855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1172
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig825.19282.1prot_M-pyrifera_M_contig825.19282.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig825 9218..9457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.5771844-UTR-M-pyrifera_M_contig825:7584..76881622816731.5771844-UTR-M-pyrifera_M_contig825:7584..7688Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig825 7585..7688 +
1692278145.4926252-UTR-M-pyrifera_M_contig825:7584..76881692278145.4926252-UTR-M-pyrifera_M_contig825:7584..7688Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig825 7585..7688 +
1622816731.5920978-UTR-M-pyrifera_M_contig825:8787..92171622816731.5920978-UTR-M-pyrifera_M_contig825:8787..9217Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig825 8788..9217 +
1692278145.50604-UTR-M-pyrifera_M_contig825:8787..92171692278145.50604-UTR-M-pyrifera_M_contig825:8787..9217Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig825 8788..9217 +
1622816731.6150935-UTR-M-pyrifera_M_contig825:9457..98551622816731.6150935-UTR-M-pyrifera_M_contig825:9457..9855Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig825 9458..9855 +
1692278145.5237992-UTR-M-pyrifera_M_contig825:9457..98551692278145.5237992-UTR-M-pyrifera_M_contig825:9457..9855Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig825 9458..9855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.6042998-CDS-M-pyrifera_M_contig825:9217..94571622816731.6042998-CDS-M-pyrifera_M_contig825:9217..9457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig825 9218..9457 +
1692278145.5149412-CDS-M-pyrifera_M_contig825:9217..94571692278145.5149412-CDS-M-pyrifera_M_contig825:9217..9457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig825 9218..9457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig825.19282.1

>prot_M-pyrifera_M_contig825.19282.1 ID=prot_M-pyrifera_M_contig825.19282.1|Name=mRNA_M-pyrifera_M_contig825.19282.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MCLSRAFKFHVGVLHKLWMSEQGCKPMDDWPVASRLSWSVALRHKGSDAE
EKRLLQATLPRQARVGRRRSLRLGPISLP*
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mRNA from alignment at M-pyrifera_M_contig825:7585..9855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig825.19282.1 ID=mRNA_M-pyrifera_M_contig825.19282.1|Name=mRNA_M-pyrifera_M_contig825.19282.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at M-pyrifera_M_contig825:7585..9855+ (Macrocystis pyrifera P11B4 male)
GGTGCGCGGCCGACTCAACAAGTCCGGATTCGAGGAGGGCTTCATGAAAT
TACTCCAGTCCTTCCCGAAGGCCGAGAAGTACCTGATGCAGCTGCACCAT
GATCGTGAGCGCTGGGCGGTTGCGTTCTCCCTGTTGTCATTCTGCTTGGC
GGCATGGACGACAAACAGAGTCGAACCTAAGCATATCATGCGCTTCATGT
GTGCGTTCTACTGGACAATACTGCGCGAGCCTGATAGGACCGTTTTCTCT
TGTAGAGCGCGTCGATGGGTTAATGGAAATATGCTTTGTTGATGTCGAAA
ATTGCACGATATTGTAGCGAAGGGTGTCATCAAGGATACCCTCGTAGTTT
TTTCCAGATACCACACCAGAAATATTTGGGAGGGGAGGCTCAGAGGGGAC
TGGCAGGGCGGCGGGGGGGGGGAGGGGAGGGGAGCTTCACTATCAATAAT
TTGAAATATCATCGATGCAGAGTGGATGGTTAGACGTATCCCCTTCACCT
GTTGAACACGTCGCCACAAGTGCGAAACCGAACTAACGTGCTGCCAGATG
TGAGGTTTAGAACTGGAGGGCTCAATATCTGACGTCCGACGAAAGAAATG
CACAGAGCCGGCTCTATTGGCGTTGAAACTCATGTCTGAACAGGCGATTC
ATCACATTTACTAACATTGTCATGTGCGTAAAACATGTCAAACAGTGAAT
TCCGCCGCTCGGGCAAGGGAGGAGGGAGGGAAGATTGGTGCCCGCGAAAT
CATGGTCGGGTGCCCTTGTGGTCAGTGATAACGGTTTTGGTGGCGCTGGA
CAGCTACCATTGGCATGCGACACCGGGAATCGTCTTACACCAGATATTAG
TCTGGAACATGAAAGTCTGGTTCGTTTTGTCTTTGTTTTGAATATATCGT
GCCCGCCCTGTGTGTTATTTTTGTACTGGACTCTCCGTAAGGTACCCCCC
ACCCCCACACCCCTTGAGCGATTACCATCCTCTTGCTGCTTGCCTGAAGG
AGGTGGATTCATGTCTCTCTGTAGTTAACCACTGGCGGCTTGGAGAGTTT
GACTTATTTCTTGATTTGCTGTGGTAGGTTTTACAAAATCGTCGGGTGAT
GCGCGATACTGTTTGTATCCCACCCGTGCAACGATCAGTGCATTTACTCA
TCCTGGACCATTGCGTGTTGATGTTGGTTGGCGCGGCAATAATGAACTCG
CAGGTTTGGTGGGTCTGCAACGCTAGGACCTTCTTGGTCAAGGTGTTCGG
CTTCTTGGAGAATGCCATCGAACAACAAAACGACTGCAGTGCTCTTCGCA
ACACCAAGTTGCACATCCCTACGATGACTTTACCACGAACCGCTATTTCT
TGGTTCGGGGACGAGCTCTTGAAGCCACTGCAGTTCGGGCTTGGAGAATG
GCCTTTGAAGTTCATGTTACTGTAGAGGAGACGGACGCCGCAACGCTCTT
CTGCGGCGGCCCAGGCAACTGCTTGGTAGATGGCCCCGACCGCGCAAAGG
CATTAGGCGAGTTGAAGTTCGTTAGGGGCATGGTTGTCGACGTCGAGACT
GTGGCTTTCATAGTTGAGAACCGTAATGGTGTGGACATGCGCTACGGACT
CTTGGCCTTTCCTGCCGGTTCTTTTGGGTGGTGATGTGCCTGAGCCGCGC
GTTCAAGTTTCACGTAGGCGTTCTCCACAAGCTCTGGATGTCAGAGCAGG
GGTGTAAACCGATGGATGATTGGCCGGTGGCGTCTAGACTGAGTTGGTCA
GTAGCCCTAAGACACAAGGGGTCAGATGCAGAGGAGAAGAGGCTATTGCA
GGCGACCCTACCCCGCCAAGCAAGGGTCGGTCGAAGACGATCGCTGAGGC
TGGGACCAATCAGTCTACCCTAGTGCAAGTGAAGGAGAACGGGCATACGG
TACAAGACCGTCGCAAGTTGTACGTGGTTCTCCTGAAGAAAAGCACAGCA
GTCGTGGCGAAGGGAGTAGAATCTGTGAAACCTGAGACACTGCGTCACAT
ATTCGCGACTTTCGCGGCCCAAGTAGAGCAGGCAGCAAGGATCGAGTCGG
GGACGGGATTTGTCTTGGGCAACGCGGAGACTATACGTTTGCACGCGGTG
AAGAGACTTAGCGTTCAGCTAACTGCTACCAGGAGCAGACAAGCTATTGT
AGGGTCCCAGGGGAGTGGCAGTGGAGAGGAAAGCAGAAAAGCGAGGAGGA
TCACTCGCCACATCGGCTCAGACCACTTCTTCTCTTCTCTCAACCAGCAG
ACGAAACAGTTAATATTACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig825:7585..9855+

>mRNA_M-pyrifera_M_contig825.19282.1 ID=mRNA_M-pyrifera_M_contig825.19282.1|Name=mRNA_M-pyrifera_M_contig825.19282.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig825:7585..9855+ (Macrocystis pyrifera P11B4 male)
ATGTGCCTGAGCCGCGCGTTCAAGTTTCACGTAGGCGTTCTCCACAAGCT
CTGGATGTCAGAGCAGGGGTGTAAACCGATGGATGATTGGCCGGTGGCGT
CTAGACTGAGTTGGTCAGTAGCCCTAAGACACAAGGGGTCAGATGCAGAG
GAGAAGAGGCTATTGCAGGCGACCCTACCCCGCCAAGCAAGGGTCGGTCG
AAGACGATCGCTGAGGCTGGGACCAATCAGTCTACCCTAGATGTGCCTGA
GCCGCGCGTTCAAGTTTCACGTAGGCGTTCTCCACAAGCTCTGGATGTCA
GAGCAGGGGTGTAAACCGATGGATGATTGGCCGGTGGCGTCTAGACTGAG
TTGGTCAGTAGCCCTAAGACACAAGGGGTCAGATGCAGAGGAGAAGAGGC
TATTGCAGGCGACCCTACCCCGCCAAGCAAGGGTCGGTCGAAGACGATCG
CTGAGGCTGGGACCAATCAGTCTACCCTAG
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