mRNA_M-pyrifera_M_contig82469.19278.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82469.19278.1
Unique NamemRNA_M-pyrifera_M_contig82469.19278.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A7V9A641_9BACT (Protein flp n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V9A641_9BACT)

HSP 1 Score: 177 bits (449), Expect = 4.520e-53
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 RHSLKSGTIENMLTPQITLPDNEDRARGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            RHSLKSGTIENMLTPQITLPDNEDRARGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME
Sbjct:  262 RHSLKSGTIENMLTPQITLPDNEDRARGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 345          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A7Y8LJE2_9BACT (Beta-lactamase family protein n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y8LJE2_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.640e-16
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   79 RGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            RGLGWV+ + +T  + YHSGSN TGFRC SQFDP+   G+VIMTNG NG ++W+ +++
Sbjct:  116 RGLGWVIDSTITGNIVYHSGSNQTGFRCYSQFDPQEGNGIVIMTNGENGSELWRRLIK 173          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: UPI001F2121C3 (beta-lactamase family protein n=1 Tax=Rubinisphaera sp. JC750 TaxID=2898658 RepID=UPI001F2121C3)

HSP 1 Score: 81.6 bits (200), Expect = 2.070e-16
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    4 HSLKSGTIENMLTPQITLPDNEDRARGLGWVLKT----GVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            HSL S  +E ML P I+  + ++   GLGW L+     G  P + YHSGSNGTGFRC+S+F P+   G+VIMTN + G++++ A++E
Sbjct:  255 HSLNSQMVERMLAP-ISHREEQNADWGLGWGLRNATPKGDQPKLVYHSGSNGTGFRCHSEFQPERGTGLVIMTNAIGGKELYTALVE 340          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: F0SGG4_RUBBR (Beta-lactamase n=2 Tax=Rubinisphaera brasiliensis TaxID=119 RepID=F0SGG4_RUBBR)

HSP 1 Score: 81.6 bits (200), Expect = 2.920e-16
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 RHSLKSGTIENMLTPQITLPDNEDRARGLGWVLKT----GVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            +HSL S  ++ MLTP  +  + ++   GLGW L+     G  P + YHSGSNGTGFRC+S+F P+   G+VIMTN + G++++ A++E
Sbjct:  379 KHSLSSQMVDQMLTPN-SHREEQNADWGLGWGLRNTTPKGDQPKLVYHSGSNGTGFRCHSEFQPERGTGLVIMTNAIGGKELYTALVE 465          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A6L3ZW55_9BACT (Serine hydrolase n=2 Tax=Ignavibacteriae TaxID=1134404 RepID=A0A6L3ZW55_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 7.740e-16
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 RHSLKSGTIENMLTPQITLPDNE--DRA---------RGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            +H L    I  ML  Q+ +   E  DR          R LGW + + +T  V YHSG+N TGFRC SQF PK   G+VIMTNG NG K+WQ +++
Sbjct:  403 KHFLSEKIINEMLKHQVRVDTREVIDRPGRNIGLFAFRNLGWAVDSTITGDVVYHSGANQTGFRCYSQFSPKDGSGIVIMTNGENGSKLWQRIIK 497          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A356ENP8_9PLAN (Beta-lactamase domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356ENP8_9PLAN)

HSP 1 Score: 74.3 bits (181), Expect = 2.780e-15
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    4 HSLKSGTIENMLTPQITLPDNEDRAR-----------GLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            HSL   T++ MLT +      +   R           GLGW +         YH G+NG+GFRC ++FDP+   GVVIMTNG++G K+W+AV+E
Sbjct:   24 HSLSRETVKEMLTREFQADGRKPIKRCSPAVSDDVYFGLGWHIDATPLGDRIYHGGTNGSGFRCYNEFDPQRGSGVVIMTNGLSGDKLWEAVVE 117          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A7J4VFZ7_9BACT (Class A beta-lactamase-related serine hydrolase n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7J4VFZ7_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.630e-14
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    7 SLKSGTIENMLTPQITLPDNEDRAR-----------GLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            SL +GTI+ ML  Q+  P  E + R            LGW +    T  + YHSGSNG+GF+C  QFD  T  G+VIMTN + G  +W A+++
Sbjct:  278 SLAAGTIDTMLARQVESPSREPQKRPGGKNGIKTFRSLGWAIDQTPTGDIHYHSGSNGSGFKCYHQFDRATGSGIVIMTNSLGGLGLWDALIQ 370          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A7W1ZRE9_9BACT (Cyanophycinase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1ZRE9_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.370e-14
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 RHSLKSGTIENMLTPQI--------TLPDNED-RAR-GLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVW 237
            +HSL + T++ MLT           +LP+ E  +AR GLGW ++        YHSGSNGTGFRC + F P T  G+VIM NGVNG K+W
Sbjct:  519 KHSLNAKTLDAMLTVSSNSKGNDAESLPNEEGGKARFGLGWRVEMRENGKRVYHSGSNGTGFRCYADFHPPTGNGIVIMANGVNGNKLW 607          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A7X7IPT7_9BACT (Beta-lactamase family protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7IPT7_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 2.080e-13
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    4 HSLKSGTIENMLT-----------PQITLPDNEDRARGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            HSL   TIE ML             + +   ++D   GLGW +         YH G+NG+GFRC ++FDP+   G+V+MTNG++G K+W+AV+E
Sbjct:  353 HSLSRETIEKMLVRAFKADGRKPVKRCSPATSDDVYFGLGWQIDATPLGDRIYHGGTNGSGFRCYNEFDPRRGSGLVLMTNGLSGNKLWEAVVE 446          
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Match: A0A2D5S999_9PLAN (PepX_C domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5S999_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 2.920e-10
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   34 MLTPQITLPDNEDRARGLGWVLKTGVTPVVAYHSGSNGTGFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME 252
            ML+P I+  D++D   GLGW L+        +HSGSNG GFRC S+F P+   G+VIMTN ++G+++ QAV++
Sbjct:  932 MLSP-ISHRDDQDADWGLGWGLQELDGRQRVFHSGSNGAGFRCYSEFFPECGDGLVIMTNALSGKELRQAVID 1003          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82469.19278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7V9A641_9BACT4.520e-53100.00Protein flp n=1 Tax=Bremerella alba TaxID=980252 R... [more]
A0A7Y8LJE2_9BACT1.640e-1656.90Beta-lactamase family protein n=1 Tax=Ignavibacter... [more]
UPI001F2121C32.070e-1645.98beta-lactamase family protein n=1 Tax=Rubinisphaer... [more]
F0SGG4_RUBBR2.920e-1644.32Beta-lactamase n=2 Tax=Rubinisphaera brasiliensis ... [more]
A0A6L3ZW55_9BACT7.740e-1644.21Serine hydrolase n=2 Tax=Ignavibacteriae TaxID=113... [more]
A0A356ENP8_9PLAN2.780e-1540.43Beta-lactamase domain-containing protein n=1 Tax=P... [more]
A0A7J4VFZ7_9BACT2.630e-1440.86Class A beta-lactamase-related serine hydrolase n=... [more]
A0A7W1ZRE9_9BACT3.370e-1447.19Cyanophycinase n=1 Tax=Verrucomicrobia bacterium T... [more]
A0A7X7IPT7_9BACT2.080e-1339.36Beta-lactamase family protein n=1 Tax=Pirellulacea... [more]
A0A2D5S999_9PLAN2.920e-1046.58PepX_C domain-containing protein n=1 Tax=Planctomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82469contigM-pyrifera_M_contig82469:657..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog756272.Plabr_2965
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-lactamase
EggNOG OGs2J326@203682,COG1680@1,COG1680@2
COG Functional cat.V
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.3758078-CDS-M-pyrifera_M_contig82469:656..9081622816731.3758078-CDS-M-pyrifera_M_contig82469:656..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82469 657..908 -
1692278145.395571-CDS-M-pyrifera_M_contig82469:656..9081692278145.395571-CDS-M-pyrifera_M_contig82469:656..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82469 657..908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82469.19278.1prot_M-pyrifera_M_contig82469.19278.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82469 657..908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82469.19278.1

>prot_M-pyrifera_M_contig82469.19278.1 ID=prot_M-pyrifera_M_contig82469.19278.1|Name=mRNA_M-pyrifera_M_contig82469.19278.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
RHSLKSGTIENMLTPQITLPDNEDRARGLGWVLKTGVTPVVAYHSGSNGT
GFRCNSQFDPKTNVGVVIMTNGVNGRKVWQAVME
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mRNA from alignment at M-pyrifera_M_contig82469:657..908-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82469.19278.1 ID=mRNA_M-pyrifera_M_contig82469.19278.1|Name=mRNA_M-pyrifera_M_contig82469.19278.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig82469:657..908- (Macrocystis pyrifera P11B4 male)
CGCCATTCGCTCAAATCCGGCACAATCGAGAATATGCTGACGCCTCAGAT TACATTGCCAGATAATGAAGACAGAGCGCGCGGTCTAGGATGGGTTCTCA AGACTGGTGTTACCCCGGTAGTTGCCTATCATTCAGGTTCCAATGGTACA GGCTTCCGTTGCAACAGTCAGTTCGATCCGAAGACGAACGTAGGAGTGGT CATCATGACCAACGGTGTAAATGGTCGAAAGGTGTGGCAAGCTGTTATGG AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82469:657..908-

>mRNA_M-pyrifera_M_contig82469.19278.1 ID=mRNA_M-pyrifera_M_contig82469.19278.1|Name=mRNA_M-pyrifera_M_contig82469.19278.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig82469:657..908- (Macrocystis pyrifera P11B4 male)
CGCCATTCGCTCAAATCCGGCACAATCGAGAATATGCTGACGCCTCAGAT
TACATTGCCAGATAATGAAGACAGAGCGCGCGGTCTAGGATGGGTTCTCA
AGACTGGTGTTACCCCGGTAGTTGCCTATCATTCAGGTTCCAATGGTACA
GGCTTCCGTTGCAACAGTCAGTTCGATCCGAAGACGAACGTAGGAGTGGT
CATCATGACCAACGGTGTAAATGGTCGAAAGGTGTGGCAAGCTGTTATGG
AGCGCCATTCGCTCAAATCCGGCACAATCGAGAATATGCTGACGCCTCAG
ATTACATTGCCAGATAATGAAGACAGAGCGCGCGGTCTAGGATGGGTTCT
CAAGACTGGTGTTACCCCGGTAGTTGCCTATCATTCAGGTTCCAATGGTA
CAGGCTTCCGTTGCAACAGTCAGTTCGATCCGAAGACGAACGTAGGAGTG
GTCATCATGACCAACGGTGTAAATGGTCGAAAGGTGTGGCAAGCTGTTAT
GGAG
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