mRNA_M-pyrifera_M_contig8242.19271.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8242.19271.1
Unique NamemRNA_M-pyrifera_M_contig8242.19271.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8242.19271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8242contigM-pyrifera_M_contig8242:2720..3457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8242.19271.1prot_M-pyrifera_M_contig8242.19271.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8242 2753..3271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.077373-UTR-M-pyrifera_M_contig8242:2719..27521622816731.077373-UTR-M-pyrifera_M_contig8242:2719..2752Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8242 2720..2752 +
1692278145.225121-UTR-M-pyrifera_M_contig8242:2719..27521692278145.225121-UTR-M-pyrifera_M_contig8242:2719..2752Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8242 2720..2752 +
1622816731.099032-UTR-M-pyrifera_M_contig8242:3271..34571622816731.099032-UTR-M-pyrifera_M_contig8242:3271..3457Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8242 3272..3457 +
1692278145.2718751-UTR-M-pyrifera_M_contig8242:3271..34571692278145.2718751-UTR-M-pyrifera_M_contig8242:3271..3457Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8242 3272..3457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.0881-CDS-M-pyrifera_M_contig8242:2752..32711622816731.0881-CDS-M-pyrifera_M_contig8242:2752..3271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8242 2753..3271 +
1692278145.2443912-CDS-M-pyrifera_M_contig8242:2752..32711692278145.2443912-CDS-M-pyrifera_M_contig8242:2752..3271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8242 2753..3271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8242.19271.1

>prot_M-pyrifera_M_contig8242.19271.1 ID=prot_M-pyrifera_M_contig8242.19271.1|Name=mRNA_M-pyrifera_M_contig8242.19271.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MPTPPHPTLLQNQQSRIKTTFQNHPQSKRIIPGMTLAVQHTPTWYDNRVR
GRLTFDTSFPTRFANTFRRFRHVLDINEAKLSSISVGQMETRPPFRQKTP
RKTNHLGKEWHHTINSSTLLSLSSCPSPIMQLAEPLTQRSRVWHKQYLRL
VAEYPTCSVLAMRGWEGLCPYD*
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mRNA from alignment at M-pyrifera_M_contig8242:2720..3457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8242.19271.1 ID=mRNA_M-pyrifera_M_contig8242.19271.1|Name=mRNA_M-pyrifera_M_contig8242.19271.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig8242:2720..3457+ (Macrocystis pyrifera P11B4 male)
CTACTATTTAATACCTCTTCCCAACCGAAAAATATGCCCACTCCACCCCA
CCCCACCCTTCTTCAGAATCAACAATCAAGAATCAAGACTACCTTTCAAA
ATCACCCACAATCCAAGCGTATTATCCCAGGCATGACACTCGCTGTACAG
CACACGCCAACCTGGTACGATAACAGGGTTAGGGGGCGGCTAACCTTTGA
CACGAGTTTCCCTACTCGTTTCGCAAACACATTTCGACGTTTTCGACATG
TTTTAGATATTAACGAAGCGAAACTTAGCAGCATCAGCGTGGGACAAATG
GAGACCCGACCTCCCTTTCGACAAAAAACGCCTCGCAAGACAAACCATCT
CGGGAAGGAGTGGCATCACACGATTAACAGCTCGACCCTCCTGTCTCTCT
CCTCCTGTCCTTCGCCCATCATGCAACTCGCCGAACCACTCACACAGCGC
TCTCGCGTTTGGCACAAGCAGTATTTACGCCTGGTCGCTGAATACCCGAC
GTGTTCCGTCCTGGCAATGAGGGGATGGGAGGGCCTATGCCCTTACGACT
AAGGCCATGCATGGCATGCATACACCCTACATAGCCCCTGGAACCCTCGG
CCTCGCCCCTCTGGTGTGCCTCCTTCCGCTTGGTCCTATTCCTTCTCCTC
TGACTCCTTCTCGGCGGTTCCCTTGGCCAGGTTTCCGATGACGGCCTGGA
AGGCATTTACGTCGGGGCGGTGGGCGGGGGTCTTCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8242:2720..3457+

>mRNA_M-pyrifera_M_contig8242.19271.1 ID=mRNA_M-pyrifera_M_contig8242.19271.1|Name=mRNA_M-pyrifera_M_contig8242.19271.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig8242:2720..3457+ (Macrocystis pyrifera P11B4 male)
ATGCCCACTCCACCCCACCCCACCCTTCTTCAGAATCAACAATCAAGAAT
CAAGACTACCTTTCAAAATCACCCACAATCCAAGCGTATTATCCCAGGCA
TGACACTCGCTGTACAGCACACGCCAACCTGGTACGATAACAGGGTTAGG
GGGCGGCTAACCTTTGACACGAGTTTCCCTACTCGTTTCGCAAACACATT
TCGACGTTTTCGACATGTTTTAGATATTAACGAAGCGAAACTTAGCAGCA
TCAGCGTGGGACAAATGGAGACCCGACCTCCCTTTCGACAAAAAACGCCT
CGCAAGACAAACCATCTCGGGAAGGAGTGGCATCACACGATTAACAGCTC
GACCCTCCTGTCTCTCTCCTCCTGTCCTTCGCCCATCATGCAACTCGCCG
AACCACTCACACAGCGCTCTCGCGTTTGGCACAAGCAGTATTTACGCCTG
GTCGCTGAATACCCGACGTGTTCCGTCCTGGCAATGAGGGGATGGGAGGG
CCTATGCCCTTACGACTAAATGCCCACTCCACCCCACCCCACCCTTCTTC
AGAATCAACAATCAAGAATCAAGACTACCTTTCAAAATCACCCACAATCC
AAGCGTATTATCCCAGGCATGACACTCGCTGTACAGCACACGCCAACCTG
GTACGATAACAGGGTTAGGGGGCGGCTAACCTTTGACACGAGTTTCCCTA
CTCGTTTCGCAAACACATTTCGACGTTTTCGACATGTTTTAGATATTAAC
GAAGCGAAACTTAGCAGCATCAGCGTGGGACAAATGGAGACCCGACCTCC
CTTTCGACAAAAAACGCCTCGCAAGACAAACCATCTCGGGAAGGAGTGGC
ATCACACGATTAACAGCTCGACCCTCCTGTCTCTCTCCTCCTGTCCTTCG
CCCATCATGCAACTCGCCGAACCACTCACACAGCGCTCTCGCGTTTGGCA
CAAGCAGTATTTACGCCTGGTCGCTGAATACCCGACGTGTTCCGTCCTGG
CAATGAGGGGATGGGAGGGCCTATGCCCTTACGACTAA
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