mRNA_M-pyrifera_M_contig82407.19269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82407.19269.1
Unique NamemRNA_M-pyrifera_M_contig82407.19269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A6G6CDK9_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDK9_SACJA)

HSP 1 Score: 176 bits (447), Expect = 7.470e-52
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    7 QDYPLDVVRLSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRLKTVRQQRDFCER 282
            +DYPLDVVRLSPG KL+QTRRSIDV+G+++REGPDPAFII+GGQKCGTT LYECLNQHPLVARGG RETHFFDWTWQPRLKTV+QQRDF  R
Sbjct:  229 EDYPLDVVRLSPGTKLVQTRRSIDVKGVSKREGPDPAFIIIGGQKCGTTLLYECLNQHPLVARGGRRETHFFDWTWQPRLKTVQQQRDFYMR 320          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: D8LJQ2_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.490e-37
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   10 DYPLDVVRLSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRLK--TVRQQRD 270
            +YPLD VRL+PG+KL+QTRRSIDVEG+  R+GPDPAF++LGGQKCGTT LYECLNQHPLVARG  RETHFFDW W  + +  TV Q R+
Sbjct:  231 EYPLDFVRLAPGSKLVQTRRSIDVEGLVTRQGPDPAFVVLGGQKCGTTLLYECLNQHPLVARGRRRETHFFDWAWPAKGESLTVDQLRE 319          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A6H5KXX9_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX9_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.280e-37
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 DYPLDVVRLSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRLK--TVRQQRD 270
            +YPL+ VRL+PG+KL QTRRSIDVEG+  R GPDPAF+ILGGQKCGTT LYECLNQHPLVARG  RETHFFDW W  + +  TV Q R+
Sbjct:  146 EYPLEFVRLAPGSKLAQTRRSIDVEGLVTRHGPDPAFVILGGQKCGTTLLYECLNQHPLVARGRRRETHFFDWAWPAKGESLTVDQLRE 234          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A835YZ41_9STRA (Sulfotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ41_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.830e-25
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    7 QDYPLDVVRLSPGAKLLQTRRSIDVEGMAR---------------REGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRLKTVRQQRDF 273
            +D+P+  ++L PGA+L QTRRSID+   A                     PAFI++G QKCGTT +YE LNQHPLV R   RETHFFDW WQP+LKT  +Q+ F
Sbjct:  240 EDHPVRALQLPPGARLAQTRRSIDLLSAAEGAXXXXXXXXXXXXXXXATGPAFIVIGAQKCGTTSMYEYLNQHPLVLRSRRRETHFFDWRWQPQLKTEAEQQAF 343          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A7S1ZMC1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMC1_TRICV)

HSP 1 Score: 94.4 bits (233), Expect = 7.410e-21
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   31 RLSPGAKLLQTRRSID--VEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRLKTVRQQRDFC 276
            RLSPG KLLQTRRSID  ++  AR     P F+ILG QK GTT +Y+ LNQHPLV R   RETH  DW W   LKT   +R+ C
Sbjct:  243 RLSPGEKLLQTRRSIDREIDAGARLA---PTFLILGAQKAGTTSMYDYLNQHPLVVRARRRETHNLDWRWNDELKTTEARREHC 323          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A1Z5KJ06_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ06_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 6.960e-19
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 IQQDYPLDVVRLSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRLKTVRQQRDFCER 282
            + Q + L  V L+PG  L QTRRS++     +   P P+F+ILG QK GTT LY+ L QH LV     RETH  DW W  +LKTV QQR++C++
Sbjct:  248 MDQPFRLPPVVLTPGEVLYQTRRSLN-RVCDQGSRPTPSFMILGAQKAGTTSLYQYLTQHDLVIPAKRRETHCLDWRWDEKLKTVEQQREWCQK 340          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: W7U713_9STRA (Sulfotransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U713_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.010e-16
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   34 LSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQ 237
            L PGAKL QTRRSID+E       P P+F+ILG QK GTT LYE L QHPLV R   RETH+ DW W+
Sbjct:  287 LPPGAKLHQTRRSIDLES-EHGSRPCPSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDWRWR 353          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A4D9D757_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D757_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-15
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   34 LSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQ 237
            L PGAKL QTRRSID+E         P+F+ILG QK GTT LYE L QHPLV R   RETH+ DW W+
Sbjct:  618 LPPGAKLHQTRRSIDLES-EHGSRSCPSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDWRWR 684          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: F0Y688_AURAN (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y688_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 5.990e-15
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   28 VRLSPGAKLLQTRRSIDVEGMARREGPDPA---FIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQPRL 246
            V L  G +L QTRRSI   G+A   G  P    F+I+G QK GTT +YE L+QHPLVARG  RETHF DW W+  L
Sbjct:  705 VTLRVGDELTQTRRSI---GLASERGTGPLAPHFLIIGAQKAGTTSMYEYLSQHPLVARGVRRETHFLDWRWRDDL 777          
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Match: A0A7S3PHT6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PHT6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.770e-10
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   82 EGMARREGPDPAFIILGGQKCGTTFLYECLNQHPLVARGGGRETHFFDWTWQ 237
            E +  R    P F+I+G  KCGTT LYE +NQHP V R   +E HFFDW W+
Sbjct:   19 EKIQERRRRIPHFVIIGAMKCGTTSLYEYINQHPEVVRALQKEPHFFDWRWK 70          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82407.19269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6CDK9_SACJA7.470e-5285.87Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
D8LJQ2_ECTSI1.490e-3771.91Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KXX9_9PHAE3.280e-3771.91Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
A0A835YZ41_9STRA6.830e-2550.00Sulfotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S1ZMC1_TRICV7.410e-2157.14Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1Z5KJ06_FISSO6.960e-1947.87Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
W7U713_9STRA1.010e-1661.76Sulfotransferase n=1 Tax=Nannochloropsis gaditana ... [more]
A0A4D9D757_9STRA1.290e-1560.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
F0Y688_AURAN5.990e-1555.26Asp_Arg_Hydrox domain-containing protein n=1 Tax=A... [more]
A0A7S3PHT6_9STRA8.770e-1051.92Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82407contigM-pyrifera_M_contig82407:23..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D8LJQ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
EggNOG OGs2CN6N@1,2QU6N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.007002-CDS-M-pyrifera_M_contig82407:22..3311622816731.007002-CDS-M-pyrifera_M_contig82407:22..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82407 23..331 -
1692278145.2004757-CDS-M-pyrifera_M_contig82407:22..3311692278145.2004757-CDS-M-pyrifera_M_contig82407:22..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82407 23..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82407.19269.1prot_M-pyrifera_M_contig82407.19269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82407 23..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82407.19269.1

>prot_M-pyrifera_M_contig82407.19269.1 ID=prot_M-pyrifera_M_contig82407.19269.1|Name=mRNA_M-pyrifera_M_contig82407.19269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
IQQDYPLDVVRLSPGAKLLQTRRSIDVEGMARREGPDPAFIILGGQKCGT
TFLYECLNQHPLVARGGGRETHFFDWTWQPRLKTVRQQRDFCERGSLSLS
LSL
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mRNA from alignment at M-pyrifera_M_contig82407:23..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82407.19269.1 ID=mRNA_M-pyrifera_M_contig82407.19269.1|Name=mRNA_M-pyrifera_M_contig82407.19269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig82407:23..331- (Macrocystis pyrifera P11B4 male)
ATCCAACAGGACTACCCGCTCGACGTGGTGCGGTTGTCTCCGGGAGCGAA GCTCTTGCAGACGCGGCGGAGCATCGATGTGGAAGGGATGGCGAGGAGGG AGGGGCCCGACCCGGCGTTTATCATCCTCGGCGGACAGAAGTGCGGGACG ACGTTTCTTTACGAGTGCCTGAACCAGCACCCCCTGGTGGCGAGGGGGGG AGGGAGGGAGACGCACTTCTTCGACTGGACGTGGCAGCCTCGCCTAAAGA CCGTGCGGCAGCAGCGTGATTTCTGTGAGCGGGGCTCTCTCTCTCTCTCT CTCTCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82407:23..331-

>mRNA_M-pyrifera_M_contig82407.19269.1 ID=mRNA_M-pyrifera_M_contig82407.19269.1|Name=mRNA_M-pyrifera_M_contig82407.19269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig82407:23..331- (Macrocystis pyrifera P11B4 male)
ATCCAACAGGACTACCCGCTCGACGTGGTGCGGTTGTCTCCGGGAGCGAA
GCTCTTGCAGACGCGGCGGAGCATCGATGTGGAAGGGATGGCGAGGAGGG
AGGGGCCCGACCCGGCGTTTATCATCCTCGGCGGACAGAAGTGCGGGACG
ACGTTTCTTTACGAGTGCCTGAACCAGCACCCCCTGGTGGCGAGGGGGGG
AGGGAGGGAGACGCACTTCTTCGACTGGACGTGGCAGCCTCGCCTAAAGA
CCGTGCGGCAGCAGCGTGATTTCTGTGAGCGGGGCTCTCTCTCTCTCTCT
CTCTCTCTCATCCAACAGGACTACCCGCTCGACGTGGTGCGGTTGTCTCC
GGGAGCGAAGCTCTTGCAGACGCGGCGGAGCATCGATGTGGAAGGGATGG
CGAGGAGGGAGGGGCCCGACCCGGCGTTTATCATCCTCGGCGGACAGAAG
TGCGGGACGACGTTTCTTTACGAGTGCCTGAACCAGCACCCCCTGGTGGC
GAGGGGGGGAGGGAGGGAGACGCACTTCTTCGACTGGACGTGGCAGCCTC
GCCTAAAGACCGTGCGGCAGCAGCGTGATTTCTGTGAGCGGGGCTCTCTC
TCTCTCTCTCTCTCTCTC
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