mRNA_M-pyrifera_M_contig8239.19268.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8239.19268.1
Unique NamemRNA_M-pyrifera_M_contig8239.19268.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A6H5JV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV72_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.900e-31
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            Q++++PEYAFLEPRGMG+FDGKE A +LPEA   G VY +DA  LTWRPPPNTDGTPNESV+DVFVRVRQ
Sbjct:   76 QERVIPEYAFLEPRGMGIFDGKEVATVLPEAE--GKVYEKDAVSLTWRPPPNTDGTPNESVDDVFVRVRQ 143
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: D7FMD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.620e-28
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            Q++++PEYAFLEPRGMG+FDGKE A +LPE      VY +DA  LTWRPPPNTDGTPNESV+DVFVRVRQ
Sbjct:  208 QERVIPEYAFLEPRGMGIFDGKEVATVLPE------VYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQ 271
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A835Z0I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.340e-17
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            ++++VPEYAFLEPRGMGL++     AILP       +Y  DA D TWRPPPN DGT +ESV DV VR RQ
Sbjct:  190 RERVVPEYAFLEPRGMGLWESGNVTAILPA------LYRADAQDPTWRPPPNDDGTLSESVLDVLVRGRQ 253
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A7S4BFM1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BFM1_CHRCT)

HSP 1 Score: 77.0 bits (188), Expect = 2.670e-15
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            ++++VPEY+FL+ RG+G  DG+      P A  +  V+ +DA D  WRPP   DGTPNESV DVF RVRQ
Sbjct:  133 RERLVPEYSFLDARGLGRLDGE------PSAQTWASVHARDATDAFWRPPEGDDGTPNESVADVFARVRQ 196
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A7S2QSQ0_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSQ0_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 6.240e-15
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDAN-DLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            Q +IVPEY FL+PRGMG F+G          S + +V+ +D    + W+PP N DGT NESVNDVF+RVRQ
Sbjct:   75 QSRIVPEYTFLDPRGMGTFEGNTF-------SKYDFVHQKDEQVGILWKPPRNDDGTDNESVNDVFIRVRQ 138
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A0G4ENT4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENT4_VITBC)

HSP 1 Score: 76.6 bits (187), Expect = 8.150e-15
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            QD++VPEY +L+PRG+G  DG          S++  ++ QD   +  RPPP +DGTPNESV D+F+R+RQ
Sbjct:  255 QDRLVPEYLYLDPRGVGALDGSSL-------SLYDSIHQQDVESIDARPPPGSDGTPNESVMDLFIRIRQ 317
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: D8T004_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T004_SELML)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-14
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            + +IVPEY+FL+ RG+G ++GK   A+         VY  D   L  RPPPNT+GTPNESV DVFVRV Q
Sbjct:   96 RSRIVPEYSFLDARGLGAYEGKTLDAV-------NEVYETDVVSLQSRPPPNTNGTPNESVADVFVRVTQ 158
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BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: UPI000D1C4CAB (uncharacterized protein LOC9662274 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C4CAB)

HSP 1 Score: 73.6 bits (179), Expect = 6.610e-14
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            + +IVPEY+FL+ RG+G ++GK   A+         VY  D   L  RPPPNT+GTPNESV DVFVRV Q
Sbjct:  168 RSRIVPEYSFLDARGLGAYEGKTLDAV-------NEVYETDVVSLQSRPPPNTNGTPNESVADVFVRVTQ 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A0B0NB52_GOSAR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=21 Tax=Gossypium TaxID=3633 RepID=A0A0B0NB52_GOSAR)

HSP 1 Score: 71.6 bits (174), Expect = 2.880e-13
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   10 IVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            IVPEY+FL+ RG+G ++GKE  AI         VY  D+   T +PPP  DGTPNESV DVFVRV Q
Sbjct:  145 IVPEYSFLDARGLGAYEGKELEAI-------SQVYESDSISSTIKPPPIDDGTPNESVADVFVRVTQ 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Match: A0A1R3KTG8_9ROSI (Histidine phosphatase superfamily, clade-1 n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KTG8_9ROSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.300e-13
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   10 IVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPPPNTDGTPNESVNDVFVRVRQ 210
            IVPEY+FL+ RG+G ++GK+  A+         VY  D+   T RPPP  DGTPNESV+DVFVRV Q
Sbjct:  160 IVPEYSFLDARGLGAYEGKKLEAV-------SEVYESDSISSTIRPPPIDDGTPNESVSDVFVRVTQ 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8239.19268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV72_9PHAE8.900e-3175.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMD0_ECTSI1.620e-2872.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z0I4_9STRA2.340e-1758.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4BFM1_CHRCT2.670e-1551.43Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2QSQ0_9EUKA6.240e-1552.11Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A0G4ENT4_VITBC8.150e-1547.14Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D8T004_SELML1.650e-1452.86Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
UPI000D1C4CAB6.610e-1452.86uncharacterized protein LOC9662274 n=2 Tax=Selagin... [more]
A0A0B0NB52_GOSAR2.880e-1355.222,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A1R3KTG8_9ROSI3.300e-1353.73Histidine phosphatase superfamily, clade-1 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8239contigM-pyrifera_M_contig8239:184..1516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue8.2e-23
Seed eggNOG ortholog2880.D7FMD0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine phosphatase superfamily (branch 1)
EggNOG OGs28IES@1,2QQRI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.9585295-CDS-M-pyrifera_M_contig8239:183..2911622816730.9585295-CDS-M-pyrifera_M_contig8239:183..291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8239 184..291 +
1692278145.1788406-CDS-M-pyrifera_M_contig8239:183..2911692278145.1788406-CDS-M-pyrifera_M_contig8239:183..291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8239 184..291 +
1622816730.9722807-CDS-M-pyrifera_M_contig8239:1414..15161622816730.9722807-CDS-M-pyrifera_M_contig8239:1414..1516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8239 1415..1516 +
1692278145.1911402-CDS-M-pyrifera_M_contig8239:1414..15161692278145.1911402-CDS-M-pyrifera_M_contig8239:1414..1516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8239 1415..1516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8239.19268.1prot_M-pyrifera_M_contig8239.19268.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8239 184..1516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8239.19268.1

>prot_M-pyrifera_M_contig8239.19268.1 ID=prot_M-pyrifera_M_contig8239.19268.1|Name=mRNA_M-pyrifera_M_contig8239.19268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
QDKIVPEYAFLEPRGMGLFDGKEAAAILPEASIFGYVYNQDANDLTWRPP
PNTDGTPNESVNDVFVRVRQ
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mRNA from alignment at M-pyrifera_M_contig8239:184..1516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8239.19268.1 ID=mRNA_M-pyrifera_M_contig8239.19268.1|Name=mRNA_M-pyrifera_M_contig8239.19268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1333bp|location=Sequence derived from alignment at M-pyrifera_M_contig8239:184..1516+ (Macrocystis pyrifera P11B4 male)
CAGGACAAGATCGTTCCGGAGTATGCTTTCCTCGAGCCCCGTGGCATGGG
CCTCTTCGACGGAAAAGAAGCGGCGGCTATTCTTCCTGAGGCGAGTATTT
TCGGGTATGTAGTGCCGGTCTTGAGTAGTGCCGGCTGCCCGCTGACGTAC
AGTACCTGCGAAAAATTGCTTGGCACAGACAGGTGGGATTGACCAGCGTG
GCAGTGGTGCGGAGTAATTAGTGCCGGTTGGTTTCCGCTTCATATAGAAT
ATATATACGAGGTAGAGCACGTATACCCCTACTTTTGCGCTGCAAAATTA
GCCGGATGTTCATGTAGAAAGTCTGAAGCCGCGGAGGTCCGCACCGTACC
CCGACCGGAAATCTCCGGGGGAAGGGGCTTCTGATACCTTCCACCAGCGC
ATACCAGTTGACGATAACTACGAAATACCCAGGGCTTTTCACGGGTCATG
CATGACCCGGCCCGCGGGTCGGATTCAGGAGGTCTTTAAAATCTCACGGG
TCGGGTCGGGTCGGGTCGGATGCGGAGGTTTTCAAAATGTCACGGGTCGG
GCCAGGTCACCCTACCCGCGAGGTGTGACCTGACCCGTTCGTTGTCAGCT
ATCCACCTGCGCGAGTTCTTCTATGCAGCGAGAGCAATTATTAATACACC
CTGTCTTGCCTAGAGCCCATCTTAACGGGGAACACTACATTTCGTTCAAT
CAGATGCAAATTAAATTAGAAGAAAAAAATCTAGTCGAATTGAAAGAACC
GAAAGCCCTCGATAAGGTGGGCCCTTAAATTTAATTAGAAAAAAAAAATC
AAGTCAAATTGAGAGAGCCGAAAGTCCCCGTTAAGATGGGCCCTAAACTG
CTGTTCTGCTTTTTTTTCTTCTGTTTTTGTTGTCTAAACAATGGCACGTC
GAACCGTCCTTTCTACCCACGACAACAGCTAGCACACACAGTCTCCGTCC
ATATTTGGATCCTTCATCCTACAGGTGACTATAAAAGATGCTCGGCAGTA
GACTATATAGCTTGATAATGTACCTGGTATGCTAATATTGTCATCACTAT
TGTTGTTACGTACTTCCGGCGACGATAAAAACTGCAAAAAAAAAAAAGTC
CAGTTCTTAAATTCCAGGTGTGTTTGTGAACGCTCTTATATACAACGATT
CGATCGGTTCGATTCTTAACAACCATTGTGTGTGTCTTTGTGTTTTTGTG
TTTTTTGTTTTTGCGCCGGACACAACTTCAGGTCTACAACCAGGACGCGA
ACGACCTCACCTGGCGACCTCCACCGAATACCGACGGCACACCCAACGAA
AGCGTTAACGACGTTTTCGTGCGCGTCCGCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8239:184..1516+

>mRNA_M-pyrifera_M_contig8239.19268.1 ID=mRNA_M-pyrifera_M_contig8239.19268.1|Name=mRNA_M-pyrifera_M_contig8239.19268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig8239:184..1516+ (Macrocystis pyrifera P11B4 male)
CAGGACAAGATCGTTCCGGAGTATGCTTTCCTCGAGCCCCGTGGCATGGG
CCTCTTCGACGGAAAAGAAGCGGCGGCTATTCTTCCTGAGGCGAGTATTT
TCGGGTATCAGGACAAGATCGTTCCGGAGTATGCTTTCCTCGAGCCCCGT
GGCATGGGCCTCTTCGACGGAAAAGAAGCGGCGGCTATTCTTCCTGAGGC
GAGTATTTTCGGGTATGTCTACAACCAGGACGCGAACGACCTCACCTGGC
GACCTCCACCGAATACCGACGGCACACCCAACGAAAGCGTTAACGACGTT
TTCGTGCGCGTCCGCCAGGTCTACAACCAGGACGCGAACGACCTCACCTG
GCGACCTCCACCGAATACCGACGGCACACCCAACGAAAGCGTTAACGACG
TTTTCGTGCGCGTCCGCCAG
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