mRNA_M-pyrifera_M_contig82375.19266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82375.19266.1
Unique NamemRNA_M-pyrifera_M_contig82375.19266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A5A8EDW9_CAFRO (Hypothetical protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDW9_CAFRO)

HSP 1 Score: 103 bits (256), Expect = 7.550e-24
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWERESFG 252
            DPW+P G   GFFN G   W EMR +W + PP +V P  PP +D E VIEELA +QRT TLPGPMRL DIID+Y ++W+ E  G
Sbjct:  463 DPWFPHGLRGGFFNAGLRNWNEMRASWLSRPPQFVMPPYPPELDSEEVIEELAKLQRTYTLPGPMRLPDIIDLYLDIWDEELSG 546          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A7S1G7I8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7I8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-17
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELW 234
            D W+P G   GF N G   W E R AW   P  +  P  PPPV +E V+EELA +QR+  LPGPMRL DIID+Y ++W
Sbjct: 1290 DAWWPHGAKGGFCNAGLQSWRETREAWNERPAGFKRPPSPPPVPIEEVMEELAKLQRSYELPGPMRLPDIIDVYVDIW 1367          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A1V9YY98_9STRA (DLH domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YY98_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.080e-17
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPP--PPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  FFN+G   W   R  WT P    + PRPP  PP+D  L++E LA+++RT  LP PM LGDII +Y ++W+
Sbjct: 1130 DPWWPQGRNGPFFNVGLATWQANRARWTTP----IVPRPPRRPPIDSSLIMEGLASLRRTYELPHPMNLGDIISLYVDVWD 1206          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A3M6VP62_9STRA (DLH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP62_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-16
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  FFN+G H W E R  W  P     PPRPPP V   L+ + L++V+RT  LP  MRLGD+I+++ E+W+
Sbjct:  282 DPWWPQGRNGPFFNVGLHTWQESRATWLTPT-QARPPRPPP-VPAHLLFDGLSSVRRTFDLPQRMRLGDVIELFAEIWD 358          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A067C378_SAPPC (DLH domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C378_SAPPC)

HSP 1 Score: 80.5 bits (197), Expect = 4.080e-16
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPP--PPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  F+N+G   W   R  WT P    V PRPP  PPVD  L++E LA+++RT  LP PM L D+I +Y ++W+
Sbjct:  247 DPWWPQGRNGPFYNVGLANWQANRAQWTTP----VRPRPPRRPPVDSSLILEGLASMRRTFELPQPMNLSDVIALYVDIWD 323          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A1V9Y9Z3_9STRA (DLH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9Z3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.870e-16
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPP--PPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  F+N+G   W   R  WT P    V PRPP  PPVD  L++E LA+++RT  LP PM L D+I +Y ++W+
Sbjct:  247 DPWWPQGRNGPFYNVGLANWQANRAKWTTP----VVPRPPRRPPVDGSLILEGLASMRRTYELPQPMNLADVIALYVDIWD 323          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A2P4YRQ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YRQ1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.120e-15
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  F N+G   W E R  W        PPRPPP V   L+ + L++V+RT  LP  MRLGD+I+++ E+WE
Sbjct:   87 DPWWPQGRNGPFLNVGLRTWQESRTTWLTAT-QARPPRPPP-VPAHLLFDGLSSVRRTFDLPQRMRLGDVIELFAEIWE 163          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: D0N2Z1_PHYIT (DLH domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=D0N2Z1_PHYIT)

HSP 1 Score: 77.4 bits (189), Expect = 7.100e-15
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  FFN+G   W E R +W        PPRPPP V   L+ + L++V+RT  LP  MRLGD+I+++ E+WE
Sbjct:  283 DPWWPQGRNGPFFNVGLRTWQESRASWLMATQTR-PPRPPP-VPAHLLFDGLSSVRRTFDLPQRMRLGDVIELFAEIWE 359          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: W2LHL8_PHYPR (DLH domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2LHL8_PHYPR)

HSP 1 Score: 77.0 bits (188), Expect = 9.800e-15
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQGR+  FFN+G   W E R  W        PPRPPP V   L+ + L++V+RT  LP  MRLGD+I+++ E+WE
Sbjct:  283 DPWWPQGRNGPFFNVGLRTWQESRATWLMATQTR-PPRPPP-VPAHLLFDGLSSVRRTFDLPQRMRLGDVIELFAEIWE 359          
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Match: A0A6G0X5T3_9STRA (DLH domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5T3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPP--PPVDLELVIEELAAVQRTCTLPGPMRLGDIIDIYQELWE 237
            DPW+PQG++  FFN+G   W   R  WT      V PRPP  PPV  E + E L++++RT  LP PM LGDI+++Y ++W+
Sbjct:  241 DPWWPQGKNGPFFNVGLSRWQAQRLEWTTS----VLPRPPKRPPVPSESIFEGLSSMKRTFELPQPMNLGDIVELYVDIWD 317          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82375.19266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A5A8EDW9_CAFRO7.550e-2457.14Hypothetical protein n=3 Tax=Cafeteria roenbergens... [more]
A0A7S1G7I8_9STRA1.500e-1751.28Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1V9YY98_9STRA7.080e-1749.38DLH domain-containing protein n=1 Tax=Thraustothec... [more]
A0A3M6VP62_9STRA1.050e-1649.37DLH domain-containing protein n=1 Tax=Peronospora ... [more]
A0A067C378_SAPPC4.080e-1648.15DLH domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9Y9Z3_9STRA7.870e-1648.15DLH domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A2P4YRQ1_9STRA4.120e-1546.84Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
D0N2Z1_PHYIT7.100e-1548.10DLH domain-containing protein n=9 Tax=Phytophthora... [more]
W2LHL8_PHYPR9.800e-1548.10DLH domain-containing protein n=9 Tax=Phytophthora... [more]
A0A6G0X5T3_9STRA1.030e-1445.68DLH domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82375contigM-pyrifera_M_contig82375:193..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue8.5e-14
Seed eggNOG ortholog42099.EPrPV00000018978
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGs1MEFX@121069,2A884@1,2RYFX@2759
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-15_001680.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.7336583-CDS-M-pyrifera_M_contig82375:192..4471622816730.7336583-CDS-M-pyrifera_M_contig82375:192..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82375 193..447 +
1692278145.0598435-CDS-M-pyrifera_M_contig82375:192..4471692278145.0598435-CDS-M-pyrifera_M_contig82375:192..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82375 193..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82375.19266.1prot_M-pyrifera_M_contig82375.19266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82375 193..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82375.19266.1

>prot_M-pyrifera_M_contig82375.19266.1 ID=prot_M-pyrifera_M_contig82375.19266.1|Name=mRNA_M-pyrifera_M_contig82375.19266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
DPWYPQGRDHGFFNLGRHYWTEMRHAWTAPPPDYVPPRPPPPVDLELVIE
ELAAVQRTCTLPGPMRLGDIIDIYQELWERESFG*
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mRNA from alignment at M-pyrifera_M_contig82375:193..447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82375.19266.1 ID=mRNA_M-pyrifera_M_contig82375.19266.1|Name=mRNA_M-pyrifera_M_contig82375.19266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig82375:193..447+ (Macrocystis pyrifera P11B4 male)
GATCCTTGGTATCCACAAGGAAGAGATCATGGATTTTTCAACCTTGGAAG ACATTACTGGACAGAAATGAGACATGCATGGACTGCACCACCACCAGATT ATGTACCACCGAGACCACCACCACCAGTTGATCTTGAACTTGTCATTGAA GAACTTGCAGCTGTTCAAAGAACTTGTACTCTCCCAGGGCCCATGCGACT TGGAGATATCATTGATATCTACCAAGAACTGTGGGAACGAGAAAGCTTTG GGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82375:193..447+

>mRNA_M-pyrifera_M_contig82375.19266.1 ID=mRNA_M-pyrifera_M_contig82375.19266.1|Name=mRNA_M-pyrifera_M_contig82375.19266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig82375:193..447+ (Macrocystis pyrifera P11B4 male)
GATCCTTGGTATCCACAAGGAAGAGATCATGGATTTTTCAACCTTGGAAG
ACATTACTGGACAGAAATGAGACATGCATGGACTGCACCACCACCAGATT
ATGTACCACCGAGACCACCACCACCAGTTGATCTTGAACTTGTCATTGAA
GAACTTGCAGCTGTTCAAAGAACTTGTACTCTCCCAGGGCCCATGCGACT
TGGAGATATCATTGATATCTACCAAGAACTGTGGGAACGAGAAAGCTTTG
GGTAGGATCCTTGGTATCCACAAGGAAGAGATCATGGATTTTTCAACCTT
GGAAGACATTACTGGACAGAAATGAGACATGCATGGACTGCACCACCACC
AGATTATGTACCACCGAGACCACCACCACCAGTTGATCTTGAACTTGTCA
TTGAAGAACTTGCAGCTGTTCAAAGAACTTGTACTCTCCCAGGGCCCATG
CGACTTGGAGATATCATTGATATCTACCAAGAACTGTGGGAACGAGAAAG
CTTTGGGTAG
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