mRNA_M-pyrifera_M_contig82371.19265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82371.19265.1
Unique NamemRNA_M-pyrifera_M_contig82371.19265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82371.19265.1 vs. uniprot
Match: A0A5A8D2V7_CAFRO (DUF1619 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2V7_CAFRO)

HSP 1 Score: 80.5 bits (197), Expect = 3.500e-15
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   55 TYDATRRECQGLIGEAHLQILAARVGEVGNPQRKIVAAKLTFHEVTVQLPAEDIVAPPDAGETVPFELRFVVSFAELDDAELTPFIPPPPSAVKLPFDIWYPFEL 369
            T+DA    CQG++    +++LAA VGE  NPQRKI+AA   +  +T      D+ A   AG T  F L   VSFA L  + L  FIPPPPS + LP D++YPF++
Sbjct:  570 TWDAASLTCQGMLVGFEVRLLAAPVGEAANPQRKIIAAATRY--IT-----GDLTAASAAGATA-FALTSSVSFASLGASGLDRFIPPPPSVIALPHDLFYPFQI 666
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BLAST of mRNA_M-pyrifera_M_contig82371.19265.1 vs. uniprot
Match: A0A7S1EIN9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EIN9_HEMAN)

HSP 1 Score: 65.1 bits (157), Expect = 7.840e-10
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   70 RRECQGLIGEAHLQILAARVGEVGNPQRKIVAAKLTFHEVTVQLPAEDIVAPPDAGETVPFELRFVVSFAELDDAELTPFIPPPPSAV-KLPFDIWYPFEL 369
            R EC  ++   H+QIL A  G + NPQRKI+ A++ +     +     IV    +     + +R  VSF  ++D +    IPPPPS +  LP DI+YPF++
Sbjct:  305 RGECIDVVSGTHIQILTADTGNIQNPQRKILGARVVYETSNWRA----IVKTVGSESYGTYSIRSSVSFLNIEDGDTVEVIPPPPSILPSLPDDIFYPFQI 401
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BLAST of mRNA_M-pyrifera_M_contig82371.19265.1 vs. uniprot
Match: A0A7S0Z1H8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1H8_9CRYP)

HSP 1 Score: 60.8 bits (146), Expect = 2.530e-8
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   70 RRECQGLIGEAHLQILAARVGEVGNPQRKIVAAKLTFHEVTVQLPAEDIVAPPDAGETVPFELRFVVSFAELDDAELTPFIPPPPSAV-KLPFDIWYPFEL 369
            R EC  ++   H+QIL A  G V NPQRKI+ A++ +   T    A  + A  +A     + +R  VSF  + D      IPPPPS +  LP DI+YPF++
Sbjct:  390 RGECLDVVTGTHIQILTADTGNVRNPQRKILGARVVYE--TANWLAR-VKAMGEASHAT-YSIRSSVSFLNILDGGTVEVIPPPPSILPSLPDDIFYPFQI 486
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BLAST of mRNA_M-pyrifera_M_contig82371.19265.1 vs. uniprot
Match: A0A8J2X759_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X759_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.130e-6
Identity = 36/128 (28.12%), Postives = 61/128 (47.66%), Query Frame = 1 
Query:    1 DVEQWLTLTTPGVDGFATTYDATRRE----CQGLIGEAHLQILAARVGEVGNPQRKIVAAKLTFHEVTVQLPAEDIVAPPDAGETVPFELRFVVSFAELDDAELTPFIPP-PPSAVKLPFDIWYPFEL 369
            D  QWL L  P      T  DA  +E    C+  I   + + +   VG  GNPQ KI+ A+++F    +      +   P   +++   +    +F +  D++   + PP PP A+ +P D+WYPF++
Sbjct:  587 DNSQWLKLPRP------TRNDADWQERSGSCKNAITSMNYRFIWTYVGAQGNPQAKIIGARISFGTSDINYHHSTV---PSTSQSI--SITATATFVK-KDSDFVDYSPPSPPVAISVPHDVWYPFKI 702
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82371.19265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5A8D2V7_CAFRO3.500e-1544.76DUF1619 domain-containing protein n=3 Tax=Cafeteri... [more]
A0A7S1EIN9_HEMAN7.840e-1035.64Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0Z1H8_9CRYP2.530e-838.61Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A8J2X759_9STRA5.130e-628.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82371contigM-pyrifera_M_contig82371:542..910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue7e-09
Seed eggNOG ortholog42099.EPrPV00000016984
Preferred nameTCTN1
KEGG koko:K19382,ko:K19400
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001701,GO:0001838,GO:0001841,GO:0002009,GO:0003002,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007409,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009953,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0016331,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021523,GO:0021532,GO:0021537,GO:0021904,GO:0021915,GO:0021953,GO:0021954,GO:0021955,GO:0021956,GO:0022008,GO:0022406,GO:0022607,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030900,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044421,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048583,GO:0048598,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0060271,GO:0060322,GO:0060429,GO:0060562,GO:0061512,GO:0061564,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0120039,GO:0140056,GO:1904491
EggNOG free text desc.Tectonic. Source PGD
EggNOG OGs1MG6U@121069,2CN93@1,2QUK6@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.7026422-CDS-M-pyrifera_M_contig82371:541..9101622816730.7026422-CDS-M-pyrifera_M_contig82371:541..910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82371 542..910 -
1692278145.0460632-CDS-M-pyrifera_M_contig82371:541..9101692278145.0460632-CDS-M-pyrifera_M_contig82371:541..910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82371 542..910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82371.19265.1prot_M-pyrifera_M_contig82371.19265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82371 542..910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82371.19265.1

>prot_M-pyrifera_M_contig82371.19265.1 ID=prot_M-pyrifera_M_contig82371.19265.1|Name=mRNA_M-pyrifera_M_contig82371.19265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
DVEQWLTLTTPGVDGFATTYDATRRECQGLIGEAHLQILAARVGEVGNPQ
RKIVAAKLTFHEVTVQLPAEDIVAPPDAGETVPFELRFVVSFAELDDAEL
TPFIPPPPSAVKLPFDIWYPFEL
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mRNA from alignment at M-pyrifera_M_contig82371:542..910-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82371.19265.1 ID=mRNA_M-pyrifera_M_contig82371.19265.1|Name=mRNA_M-pyrifera_M_contig82371.19265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig82371:542..910- (Macrocystis pyrifera P11B4 male)
GATGTGGAGCAGTGGCTCACCCTCACCACCCCTGGAGTGGACGGCTTTGC
GACCACCTACGACGCGACACGCCGAGAGTGTCAGGGTCTGATTGGCGAAG
CGCATCTCCAGATCCTCGCAGCCCGCGTCGGCGAAGTCGGAAACCCACAG
CGCAAGATTGTAGCTGCAAAACTCACGTTCCACGAAGTCACCGTGCAACT
GCCCGCAGAAGACATTGTGGCACCTCCAGATGCAGGCGAAACGGTGCCGT
TTGAGCTTCGTTTTGTGGTGTCTTTCGCGGAACTTGACGATGCAGAGCTC
ACGCCCTTCATCCCACCACCCCCATCCGCCGTCAAGCTGCCCTTCGACAT
CTGGTACCCCTTCGAACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82371:542..910-

>mRNA_M-pyrifera_M_contig82371.19265.1 ID=mRNA_M-pyrifera_M_contig82371.19265.1|Name=mRNA_M-pyrifera_M_contig82371.19265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig82371:542..910- (Macrocystis pyrifera P11B4 male)
GATGTGGAGCAGTGGCTCACCCTCACCACCCCTGGAGTGGACGGCTTTGC
GACCACCTACGACGCGACACGCCGAGAGTGTCAGGGTCTGATTGGCGAAG
CGCATCTCCAGATCCTCGCAGCCCGCGTCGGCGAAGTCGGAAACCCACAG
CGCAAGATTGTAGCTGCAAAACTCACGTTCCACGAAGTCACCGTGCAACT
GCCCGCAGAAGACATTGTGGCACCTCCAGATGCAGGCGAAACGGTGCCGT
TTGAGCTTCGTTTTGTGGTGTCTTTCGCGGAACTTGACGATGCAGAGCTC
ACGCCCTTCATCCCACCACCCCCATCCGCCGTCAAGCTGCCCTTCGACAT
CTGGTACCCCTTCGAACTCGATGTGGAGCAGTGGCTCACCCTCACCACCC
CTGGAGTGGACGGCTTTGCGACCACCTACGACGCGACACGCCGAGAGTGT
CAGGGTCTGATTGGCGAAGCGCATCTCCAGATCCTCGCAGCCCGCGTCGG
CGAAGTCGGAAACCCACAGCGCAAGATTGTAGCTGCAAAACTCACGTTCC
ACGAAGTCACCGTGCAACTGCCCGCAGAAGACATTGTGGCACCTCCAGAT
GCAGGCGAAACGGTGCCGTTTGAGCTTCGTTTTGTGGTGTCTTTCGCGGA
ACTTGACGATGCAGAGCTCACGCCCTTCATCCCACCACCCCCATCCGCCG
TCAAGCTGCCCTTCGACATCTGGTACCCCTTCGAACTC
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