mRNA_M-pyrifera_M_contig8233.19255.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8233.19255.1
Unique NamemRNA_M-pyrifera_M_contig8233.19255.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8233.19255.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.570e-42
Identity = 180/313 (57.51%), Postives = 203/313 (64.86%), Query Frame = 1 
Query:    1 YLCCDLTCLTNPVAGCGMFGLPLVCKACYNGDGTPEFDADP-----EAPAAAPTPXXXXXXVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIVERTPGTPSXXXXXXXXXXXVEIV--CTACDAADKVLTTEDLVAMENDGLELVCDSECFVDAELEGCGAFGLEVECRVVDIPKTGGGGDNGEGGN-DDQIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------CSTEEEAICADISAAQKEALANYDNGGKVIVCDPTCEAADGDPTHCN 858
            YLCCDLTC   PVAGCG+FGLPLVCKACY+GDGTP +D DP       P+  P P XXXXX  XXXXXXX          XXXXXX        XXXXXXX         P+    XXXXXXX      C+ C+ A ++LT ED +A+ENDGLELVCD +C+ ++ L+GCGAFGL+ ECR V+I    G G    GG    + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   C+  E A+CADIS AQ+EALA YD GGKVIVCDPTC    GD +HCN
Sbjct:   46 YLCCDLTCAQTPVAGCGIFGLPLVCKACYDGDGTPAYDDDPVDGDGTTPSTTPAPAXXXXXXXXXXXXXXVMPVAAPTPEXXXXXXTLEPVMPVXXXXXXXXXXXXXXAGPTSEPEXXXXXXXXYDFDDCSPCEEATEILTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRTVEIDDGEGEGGXXXGGTTSSETGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGGGDTTSGSCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLG--GDISHCN 356
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BLAST of mRNA_M-pyrifera_M_contig8233.19255.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 6.480e-30
Identity = 179/378 (47.35%), Postives = 203/378 (53.70%), Query Frame = 1 
Query:    1 YLCCDLTCLTNPVAGCGMFGLPLVCKACYNGDGTPEFDADPEA------------------------PAAAPTPXXXXXXVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIVERTPGTPSXXXXXXXXXXXVEIVCTACDAADKVLTTEDLVAMENDGLELVCDSECFVDAELEGCGAFGLEVECRVVDIPKTGGGGDNGEGG--------NDDQIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------CSTEEEAICADISAAQKEALANYDNGGKVIVCDPTCEAADGDPTHCN 858
            YLCCDLTC   PVAGCG+FGL +VCKACY+GDGTP +D DP                          P  APTPXXXXXX  X      XXXXXXXXXXXXX                          TP XXXXXXXXXXX    C+ C+ A ++LT ED +A+ENDGLELVCD +C+ ++ L+GCGAFGL++ECR V+I       D+GEG            + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                            C+  E A+CADIS AQ+EALA YD GGKVIVCDPTC   D   +HCN
Sbjct:   46 YLCCDLTCAETPVAGCGIFGLDVVCKACYDGDGTPAYD-DPXXXXXXXXXXXXXXXXXXXXXXXXVMPVTAPTPXXXXXXXXXEPVMPVXXXXXXXXXXXXXVAGP----------------------TPEXXXXXXXXXXXDFDDCSPCEEATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDIECRAVEI-------DDGEGXXXXXXXXTTSSETGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCTEAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGED--ISHCN 391
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8233.19255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTW1_9PHAE1.570e-4257.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4W7_ECTSI6.480e-3047.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8233contigM-pyrifera_M_contig8233:3682..4929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000060.1
Exons3
Model size858
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8233.19255.1prot_M-pyrifera_M_contig8233.19255.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8233 3682..4929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.3223763-CDS-M-pyrifera_M_contig8233:3681..38081622816730.3223763-CDS-M-pyrifera_M_contig8233:3681..3808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8233 3682..3808 +
1692278144.876474-CDS-M-pyrifera_M_contig8233:3681..38081692278144.876474-CDS-M-pyrifera_M_contig8233:3681..3808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8233 3682..3808 +
1622816730.332839-CDS-M-pyrifera_M_contig8233:3871..42511622816730.332839-CDS-M-pyrifera_M_contig8233:3871..4251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8233 3872..4251 +
1692278144.8881655-CDS-M-pyrifera_M_contig8233:3871..42511692278144.8881655-CDS-M-pyrifera_M_contig8233:3871..4251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8233 3872..4251 +
1622816730.3429282-CDS-M-pyrifera_M_contig8233:4578..49291622816730.3429282-CDS-M-pyrifera_M_contig8233:4578..4929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8233 4579..4929 +
1692278144.898907-CDS-M-pyrifera_M_contig8233:4578..49291692278144.898907-CDS-M-pyrifera_M_contig8233:4578..4929Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8233 4579..4929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8233.19255.1

>prot_M-pyrifera_M_contig8233.19255.1 ID=prot_M-pyrifera_M_contig8233.19255.1|Name=mRNA_M-pyrifera_M_contig8233.19255.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=286bp
YLCCDLTCLTNPVAGCGMFGLPLVCKACYNGDGTPEFDADPEAPAAAPTP
APTPAPVRAPTPAPVRAPTPAPVRAPTPAPVKAPTPAPVRAPTPAPVIVE
RTPGTPSPEVVNKGTPAPVEIVCTACDAADKVLTTEDLVAMENDGLELVC
DSECFVDAELEGCGAFGLEVECRVVDIPKTGGGGDNGEGGNDDQIGTGEG
EGEGEGGGGGSGSGGGSGSNSDENGDGSGNGSGGGGGGSCSTEEEAICAD
ISAAQKEALANYDNGGKVIVCDPTCEAADGDPTHCN
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mRNA from alignment at M-pyrifera_M_contig8233:3682..4929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8233.19255.1 ID=mRNA_M-pyrifera_M_contig8233.19255.1|Name=mRNA_M-pyrifera_M_contig8233.19255.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig8233:3682..4929+ (Macrocystis pyrifera P11B4 male)
TACCTCTGCTGCGACCTGACGTGCTTGACGAACCCCGTGGCGGGGTGCGG
CATGTTCGGCCTCCCCCTGGTGTGCAAAGCCTGCTACAACGGCGATGGGA
CCCCCGAATTCGACGCGGACCCGGAGGGTAGCCCGACACAGGGGGACGGG
ATCCCCGAAACCCAACCCCCCCAGGACAAGACAACGGAAGCCCCTGCCGC
TGCCCCTACCCCTGCCCCTACCCCTGCCCCTGTGAGGGCCCCCACCCCTG
CCCCCGTGAGGGCCCCCACCCCTGCCCCCGTGAGGGCCCCCACCCCTGCC
CCCGTGAAGGCCCCCACCCCTGCCCCAGTGAGGGCCCCCACTCCTGCCCC
CGTTATCGTGGAGAGGACCCCCGGCACACCTTCTCCTGAAGTGGTGAATA
AGGGGACCCCCGCCCCTGTGGAGATTGTGTGTACGGCGTGCGATGCTGCG
GATAAGGTGCTGACGACGGAGGACCTGGTCGCGATGGAGAACGACGGGCT
AGAGCTCGTGTGCGATTCGGAGTGCTTCGTGGACGCCGAACTGGAAGGTT
GCGGCGCTTTCGGCCTCGAGGTTAGTCACTGTTGATTGTTGATGCTGTTA
GTAGTAGTAGTACTAGTAGTAGTGGCGGTTGTATTGATCGTAGTAGCAGT
AGTAGTAGTAGTGGTTTGCGATTATATATTTTTCCGTCACATTTTATACC
GGAAACACTATCATGGTACGGTAAGGGCTTTAGTATTCGCCACTAATAGT
GTGCTCAACATACGCAAGGAGTTGATCCAGAAAACACTAGAAAACACTAA
GCCATGGGCTGTACAACTAACCCGGTCAAATCCACTCTTCTTTTTTTTGT
TGATTGTCCGCCGGCACGCTATTTACCTCTTTACGAACTCCACCCAGGTG
GAATGCCGCGTTGTCGACATCCCCAAGACTGGCGGCGGCGGTGACAACGG
CGAAGGGGGTAATGATGACCAAATCGGCACAGGAGAGGGAGAAGGCGAAG
GCGAGGGGGGAGGCGGTGGGAGTGGCTCGGGAGGCGGATCGGGATCGAAC
AGTGATGAAAACGGCGATGGAAGCGGTAATGGTAGCGGAGGCGGAGGCGG
GGGGTCGTGCTCGACCGAAGAGGAGGCGATTTGCGCGGATATATCGGCGG
CCCAGAAGGAAGCCCTCGCCAACTACGACAACGGTGGGAAGGTCATCGTC
TGCGACCCCACTTGTGAAGCCGCAGACGGTGACCCGACGCACTGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8233:3682..4929+

>mRNA_M-pyrifera_M_contig8233.19255.1 ID=mRNA_M-pyrifera_M_contig8233.19255.1|Name=mRNA_M-pyrifera_M_contig8233.19255.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1716bp|location=Sequence derived from alignment at M-pyrifera_M_contig8233:3682..4929+ (Macrocystis pyrifera P11B4 male)
TACCTCTGCTGCGACCTGACGTGCTTGACGAACCCCGTGGCGGGGTGCGG
CATGTTCGGCCTCCCCCTGGTGTGCAAAGCCTGCTACAACGGCGATGGGA
CCCCCGAATTCGACGCGGACCCGGAGGTACCTCTGCTGCGACCTGACGTG
CTTGACGAACCCCGTGGCGGGGTGCGGCATGTTCGGCCTCCCCCTGGTGT
GCAAAGCCTGCTACAACGGCGATGGGACCCCCGAATTCGACGCGGACCCG
GAGGCCCCTGCCGCTGCCCCTACCCCTGCCCCTACCCCTGCCCCTGTGAG
GGCCCCCACCCCTGCCCCCGTGAGGGCCCCCACCCCTGCCCCCGTGAGGG
CCCCCACCCCTGCCCCCGTGAAGGCCCCCACCCCTGCCCCAGTGAGGGCC
CCCACTCCTGCCCCCGTTATCGTGGAGAGGACCCCCGGCACACCTTCTCC
TGAAGTGGTGAATAAGGGGACCCCCGCCCCTGTGGAGATTGTGTGTACGG
CGTGCGATGCTGCGGATAAGGTGCTGACGACGGAGGACCTGGTCGCGATG
GAGAACGACGGGCTAGAGCTCGTGTGCGATTCGGAGTGCTTCGTGGACGC
CGAACTGGAAGGTTGCGGCGCTTTCGGCCTCGAGCCCCTGCCGCTGCCCC
TACCCCTGCCCCTACCCCTGCCCCTGTGAGGGCCCCCACCCCTGCCCCCG
TGAGGGCCCCCACCCCTGCCCCCGTGAGGGCCCCCACCCCTGCCCCCGTG
AAGGCCCCCACCCCTGCCCCAGTGAGGGCCCCCACTCCTGCCCCCGTTAT
CGTGGAGAGGACCCCCGGCACACCTTCTCCTGAAGTGGTGAATAAGGGGA
CCCCCGCCCCTGTGGAGATTGTGTGTACGGCGTGCGATGCTGCGGATAAG
GTGCTGACGACGGAGGACCTGGTCGCGATGGAGAACGACGGGCTAGAGCT
CGTGTGCGATTCGGAGTGCTTCGTGGACGCCGAACTGGAAGGTTGCGGCG
CTTTCGGCCTCGAGGTGGAATGCCGCGTTGTCGACATCCCCAAGACTGGC
GGCGGCGGTGACAACGGCGAAGGGGGTAATGATGACCAAATCGGCACAGG
AGAGGGAGAAGGCGAAGGCGAGGGGGGAGGCGGTGGGAGTGGCTCGGGAG
GCGGATCGGGATCGAACAGTGATGAAAACGGCGATGGAAGCGGTAATGGT
AGCGGAGGCGGAGGCGGGGGGTCGTGCTCGACCGAAGAGGAGGCGATTTG
CGCGGATATATCGGCGGCCCAGAAGGAAGCCCTCGCCAACTACGACAACG
GTGGGAAGGTCATCGTCTGCGACCCCACTTGTGAAGCCGCAGACGGTGAC
CCGACGCACTGCAACGTGGAATGCCGCGTTGTCGACATCCCCAAGACTGG
CGGCGGCGGTGACAACGGCGAAGGGGGTAATGATGACCAAATCGGCACAG
GAGAGGGAGAAGGCGAAGGCGAGGGGGGAGGCGGTGGGAGTGGCTCGGGA
GGCGGATCGGGATCGAACAGTGATGAAAACGGCGATGGAAGCGGTAATGG
TAGCGGAGGCGGAGGCGGGGGGTCGTGCTCGACCGAAGAGGAGGCGATTT
GCGCGGATATATCGGCGGCCCAGAAGGAAGCCCTCGCCAACTACGACAAC
GGTGGGAAGGTCATCGTCTGCGACCCCACTTGTGAAGCCGCAGACGGTGA
CCCGACGCACTGCAAC
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