mRNA_M-pyrifera_M_contig82293.19245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82293.19245.1
Unique NamemRNA_M-pyrifera_M_contig82293.19245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7X7HS83_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HS83_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 3.420e-31
Identity = 61/113 (53.98%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    4 TDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEYVTLTGTTAP 342
            T+S+ RLY AYF+R PD++G  YW  RY+  E  LA +S  FA S EF+ TYGAL +A+FV LVY+NV+ R PD  G  HW S L  G  RG VMI FSES E+   TGT  P
Sbjct:   48 TNSVLRLYRAYFRRDPDRAGLAYWVARYSSGEMSLAAISSFFAGSEEFRKTYGALSDADFVRLVYQNVLGRQPDAKGEQHWTSKLATGTSRGQVMIGFSESPEFQRKTGTVLP 160          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7X7D7Q0_9ACTN (DUF4214 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D7Q0_9ACTN)

HSP 1 Score: 108 bits (269), Expect = 3.580e-27
Identity = 60/110 (54.55%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   16 DRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAG-YPRGSVMIAFSESEEYVTLTGTTAP 342
            DRLYSAYF R PD  G ++W  +    E  L  +SQ FA S EF   YG LD+ EFV LVY+N+++R+PD  G AHWV  L +G   RG VMI FSES EYV  TGTT P
Sbjct:   36 DRLYSAYFLRDPDLKGLQFWVDQLLGGEP-LGDVSQFFAGSDEFIERYGELDDGEFVDLVYQNILEREPDAKGRAHWVEQLGSGAIDRGRVMIGFSESPEYVAKTGTTPP 144          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7Y2GSF8_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GSF8_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 1.170e-25
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 VTDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGY-PRGSVMIAFSESEEYVTLTGTTAP 342
            V   I+RLY AYF R+ DQ G ++W  ++    A L  +SQ FA SAEF  TYG LDNA FV LVY+NV+ R PD AG A W+  LD+G   RG VMI FSES E++  T T  P
Sbjct:  465 VAHQIERLYRAYFDRSADQGGLDFWLEQFVL-GANLGVLSQEFAGSAEFVGTYGELDNAAFVDLVYQNVLDRLPDAAGRAFWLDRLDSGTNTRGEVMIGFSESPEFIIATDTIPP 578          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: UPI00190618A3 (DUF4214 domain-containing protein n=1 Tax=Thiocystis violacea TaxID=13725 RepID=UPI00190618A3)

HSP 1 Score: 108 bits (271), Expect = 3.490e-25
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   13 IDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEY 315
            + RLY AYF R PD +G  YW  ++    AGL  MSQ+FA+SAEF  TYGALD+AEFV LVY+NV+ R P+  G   W++ L+ G  RG +MI FSES EY
Sbjct:  535 LARLYFAYFDRIPDYAGLNYWIQQFRA-GAGLGDMSQAFAESAEFIATYGALDDAEFVDLVYQNVLGRAPETTGRDFWIAQLENGVTRGEMMIGFSESSEY 634          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7V8WZP7_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WZP7_9ACTN)

HSP 1 Score: 106 bits (265), Expect = 1.330e-24
Identity = 59/99 (59.60%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   19 RLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYP-RGSVMIAFSESEE 312
            RLY AYF R PD +G  YW  R A     LAT+SQ+FADS+EF+  YGAL NAEFV LVY+NV+ R PD AG A+W   LD G   RG VMI FSES E
Sbjct:  325 RLYEAYFHRIPDTAGLLYWIDRLAT-GTPLATVSQAFADSSEFRTAYGALPNAEFVDLVYQNVLGRAPDAAGRAYWTQQLDRGNATRGQVMIGFSESSE 422          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7X7D7W9_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D7W9_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 3.220e-24
Identity = 57/109 (52.29%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 VTDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEYVTLT 327
            V D   RLYSAYF R PD SG +YW  +  + +  L  +S+ FA S EFK  YG+L NAEFV LVY NV+ R+PD AG+ HW   LD G  RG VM    ES EYV  T
Sbjct:  303 VVDPTVRLYSAYFLRRPDTSGLKYWVGK-VRNQTSLDDISEEFAQSTEFKDRYGSLGNAEFVKLVYENVLAREPDNAGYLHWTYRLDHGKSRGWVMRQMCESPEYVEKT 410          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7X7D9S0_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D9S0_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 6.180e-24
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    4 TDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEYVTLTGTTAP 342
            +DSI RLY AYF R PD  G  +W+ +Y+     LA +SQ FA S EF+  YG+L NA+F  L+Y NV+ R  D  G ++WV  L+ G  RG++MI FSES E+   T T  P
Sbjct:   50 SDSILRLYRAYFLRDPDAKGHAHWNSQYSSGSMSLAAISQYFARSPEFQERYGSLSNAQFTDLIYSNVLGRKADENGQSYWVRRLNQGSSRGAMMIGFSESPEFQKKTKTLPP 162          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A7Y2ID81_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ID81_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 4.570e-23
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 VTDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAG---LATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEYVTLTGTTAP 342
            ++D I RLY AY  R PD  G  YW+     + AG   L+ +S  FA S EF+ TYG L +  FV LVY NV+ R PD +G A W+  L +G  RGS+MI FSES+E++  T T AP
Sbjct:  345 LSDQIRRLYFAYLDREPDSRGLSYWTT----FRAGGTSLSAISAQFAASTEFENTYGVLSDGGFVDLVYANVLGRPPDASGRAFWLGQLQSGMTRGSLMIGFSESQEFLNRTETAAP 457          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A1M5CF67_9BURK (Cysteine-rich secretory protein family protein n=1 Tax=Lampropedia hyalina DSM 16112 TaxID=1122156 RepID=A0A1M5CF67_9BURK)

HSP 1 Score: 102 bits (254), Expect = 7.120e-23
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   13 IDRLYSAYFQRAPDQSGWEYWSMRYAQYEAG--LATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEYVTLTGTTAPLA 348
            + RLY AYF R PD +G ++W    A Y+AG  L  +SQ FA S EF  TYG L++AEFV LVYRNV+ R P+P G   W+ +L  G  RG VM  FSES+EY   T  +  ++
Sbjct:  754 VTRLYFAYFDRVPDYAGLQHWI---AAYQAGESLQAISQQFAQSVEFVQTYGNLNDAEFVDLVYRNVLGRAPEPQGNVFWLQALQQGLLRGQVMTQFSESDEYRQRTAASVQVS 864          
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Match: A0A6B2PFN0_9RHOB (DUF4214 domain-containing protein n=1 Tax=Salipiger sp. PrR004 TaxID=2706547 RepID=A0A6B2PFN0_9RHOB)

HSP 1 Score: 101 bits (251), Expect = 1.800e-22
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    1 VTDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFKLTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFSESEEYVTLTGTTA 339
            V+  + RLY A   RAPD  G   WS R    E  LA+++  F +SAEF+ TYGALD+  FVT +Y NV+ RDPD  G A W + L+AG  R  V++ FSES E+   T   A
Sbjct:  561 VSGQVFRLYQATLDRAPDLQGLVNWSARLISGERELASVAAGFTNSAEFRKTYGALDDRGFVTQLYNNVLDRDPDAGGLAGWTARLEAGMSRAQVVLGFSESAEFKAGTAAAA 673          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82293.19245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X7HS83_9ACTN3.420e-3153.98DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7X7D7Q0_9ACTN3.580e-2754.55DUF4214 domain-containing protein (Fragment) n=1 T... [more]
A0A7Y2GSF8_9ACTN1.170e-2552.17DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
UPI00190618A33.490e-2554.46DUF4214 domain-containing protein n=1 Tax=Thiocyst... [more]
A0A7V8WZP7_9ACTN1.330e-2459.60DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7X7D7W9_9ACTN3.220e-2452.29DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7X7D9S0_9ACTN6.180e-2446.90DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7Y2ID81_9ACTN4.570e-2347.01DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A1M5CF67_9BURK7.120e-2348.25Cysteine-rich secretory protein family protein n=1... [more]
A0A6B2PFN0_9RHOB1.800e-2246.02DUF4214 domain-containing protein n=1 Tax=Salipige... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82293contigM-pyrifera_M_contig82293:174..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.8
Seed ortholog evalue3e-20
Seed eggNOG ortholog1123255.JHYS01000007_gene1566
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG2931@1,COG2931@2,COG5640@1,COG5640@2
COG Functional cat.O
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.8403583-CDS-M-pyrifera_M_contig82293:173..5391622816729.8403583-CDS-M-pyrifera_M_contig82293:173..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82293 174..539 +
1692278144.650041-CDS-M-pyrifera_M_contig82293:173..5391692278144.650041-CDS-M-pyrifera_M_contig82293:173..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82293 174..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82293.19245.1prot_M-pyrifera_M_contig82293.19245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82293 174..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82293.19245.1

>prot_M-pyrifera_M_contig82293.19245.1 ID=prot_M-pyrifera_M_contig82293.19245.1|Name=mRNA_M-pyrifera_M_contig82293.19245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
VTDSIDRLYSAYFQRAPDQSGWEYWSMRYAQYEAGLATMSQSFADSAEFK
LTYGALDNAEFVTLVYRNVMQRDPDPAGFAHWVSSLDAGYPRGSVMIAFS
ESEEYVTLTGTTAPLAGYLQWY
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mRNA from alignment at M-pyrifera_M_contig82293:174..539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82293.19245.1 ID=mRNA_M-pyrifera_M_contig82293.19245.1|Name=mRNA_M-pyrifera_M_contig82293.19245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig82293:174..539+ (Macrocystis pyrifera P11B4 male)
GTCACCGACTCGATCGATCGACTGTACTCGGCCTACTTTCAGCGGGCCCC GGACCAGTCGGGGTGGGAGTACTGGTCGATGCGATATGCGCAGTACGAGG CTGGACTCGCCACGATGTCACAGTCGTTCGCCGACTCCGCCGAGTTCAAG CTCACCTACGGTGCACTCGACAACGCCGAGTTCGTGACGCTGGTCTATCG CAACGTCATGCAGCGCGACCCCGACCCTGCCGGCTTCGCCCACTGGGTCT CGTCTCTCGATGCCGGATACCCACGCGGGTCGGTGATGATCGCCTTCAGC GAATCAGAGGAGTACGTCACGCTCACCGGCACAACCGCACCTCTTGCCGG CTATCTGCAGTGGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82293:174..539+

>mRNA_M-pyrifera_M_contig82293.19245.1 ID=mRNA_M-pyrifera_M_contig82293.19245.1|Name=mRNA_M-pyrifera_M_contig82293.19245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig82293:174..539+ (Macrocystis pyrifera P11B4 male)
GTCACCGACTCGATCGATCGACTGTACTCGGCCTACTTTCAGCGGGCCCC
GGACCAGTCGGGGTGGGAGTACTGGTCGATGCGATATGCGCAGTACGAGG
CTGGACTCGCCACGATGTCACAGTCGTTCGCCGACTCCGCCGAGTTCAAG
CTCACCTACGGTGCACTCGACAACGCCGAGTTCGTGACGCTGGTCTATCG
CAACGTCATGCAGCGCGACCCCGACCCTGCCGGCTTCGCCCACTGGGTCT
CGTCTCTCGATGCCGGATACCCACGCGGGTCGGTGATGATCGCCTTCAGC
GAATCAGAGGAGTACGTCACGCTCACCGGCACAACCGCACCTCTTGCCGG
CTATCTGCAGTGGTACGTCACCGACTCGATCGATCGACTGTACTCGGCCT
ACTTTCAGCGGGCCCCGGACCAGTCGGGGTGGGAGTACTGGTCGATGCGA
TATGCGCAGTACGAGGCTGGACTCGCCACGATGTCACAGTCGTTCGCCGA
CTCCGCCGAGTTCAAGCTCACCTACGGTGCACTCGACAACGCCGAGTTCG
TGACGCTGGTCTATCGCAACGTCATGCAGCGCGACCCCGACCCTGCCGGC
TTCGCCCACTGGGTCTCGTCTCTCGATGCCGGATACCCACGCGGGTCGGT
GATGATCGCCTTCAGCGAATCAGAGGAGTACGTCACGCTCACCGGCACAA
CCGCACCTCTTGCCGGCTATCTGCAGTGGTAC
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