prot_M-pyrifera_M_contig82258.19239.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig82258.19239.1
Unique Nameprot_M-pyrifera_M_contig82258.19239.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length171
Homology
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A6I9RTX1_ELAGV (replication factor C subunit 3 n=4 Tax=commelinids TaxID=4734 RepID=A0A6I9RTX1_ELAGV)

HSP 1 Score: 191 bits (485), Expect = 1.360e-57
Identity = 91/170 (53.53%), Postives = 123/170 (72.35%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 170
            +RSRCL +RV APT+++I+ VL+ +GK E +++PPG AARIA  S R+LRRA+L LE C+V + P  A+Q V  MDWE+Y+  +A+DI+ +QSP  L   R K+YELLVNCIPP+++  KL+ EL K      KHE+  WAA+YEH+ R+GQK  FHIEAF+AK M   K
Sbjct:  125 VRSRCLNIRVNAPTEEQIIKVLEFIGKKENLQLPPGFAARIAAQSNRSLRRAILSLETCRVQQYPFTANQAVLPMDWEQYVSEIASDIIMEQSPKRLFLVRGKIYELLVNCIPPEIILKKLLSELLKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK 294          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A6P5FSY3_ANACO (replication factor C subunit 5 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FSY3_ANACO)

HSP 1 Score: 192 bits (489), Expect = 1.410e-57
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 171
            +RSRCL VRV APT++EI+ VL+ +GK E + +P G AARIA  S RNLRRAVL  E C+V + P  A+Q V  +DWE+Y+  +A DI+ +QSP  L   R K+YELLVNCIPP+++  KL+ EL +      KHE+  WAAHYEHK R+G KP FH+EAF+AK M   K+
Sbjct:  177 VRSRCLNVRVNAPTEEEIVKVLEFIGKKENLTLPAGFAARIAAQSNRNLRRAVLFFETCRVQQYPFAANQAVPPLDWEQYVSEIAGDIMKEQSPKRLFSVRGKLYELLVNCIPPEIILKKLLSELLRKLDSELKHEVCHWAAHYEHKMRLGSKPIFHLEAFVAKFMSIYKE 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A024TKG1_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKG1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.660e-57
Identity = 97/171 (56.73%), Postives = 120/171 (70.18%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 171
            LRSRCLG+R+GAPT  +I  VL  V + E +   P LA  IA+ SERNLRRA+LMLE C+V + P   +QP+Q  +WE YI G+A D+L +QSP SLLRARDK YELL NCIPPDV+   L  ELT    +  KH++A +AA YEH+ + GQKP FH+EAFLAK M   KK
Sbjct:  175 LRSRCLGIRIGAPTHDDITRVLQKVCEKESLTFCPPLAVEIAKKSERNLRRALLMLETCRVQQYPFSPTQPIQLPEWEEYICGLAKDVLQEQSPGSLLRARDKFYELLSNCIPPDVILKVLCRELTARLDDDLKHDLAHYAAFYEHRMQCGQKPIFHLEAFLAKFMTIYKK 345          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: B9SI66_RICCO (Replication factor C / DNA polymerase III gamma-tau subunit, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9SI66_RICCO)

HSP 1 Score: 191 bits (485), Expect = 4.080e-57
Identity = 85/163 (52.15%), Postives = 123/163 (75.46%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLA 163
            +RSRCL VR+ AP++++I+ VL+ +GK EG+++P G AAR+A  S R+LRRAVL  E C+V + P  ++QP+  MDWE Y+  +A+DI+ +QSP  L + R K+YELL+NCIPPD++  +LV+EL K   E  KHE++ WAA+YEH+ R+GQK  FH+EAF+A
Sbjct:  178 IRSRCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQYPFTSNQPIPPMDWEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVNELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVA 340          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: D5ADN5_PICSI (AAA domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ADN5_PICSI)

HSP 1 Score: 190 bits (483), Expect = 1.120e-56
Identity = 90/171 (52.63%), Postives = 124/171 (72.51%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 171
            +RSRCL +R+ +P++++I+DVL+ + K EG+++P G   RIA+ S RNLRRA+L  EACKV + P   +QP QT+DWE+YI  +A+DI+ +QSP  L   R K+YELLVNCIPP+VV  +L+ EL K      KHE+  WAA+YEH+ R+GQK  FH+EAF+AK M   KK
Sbjct:  177 VRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPEVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHLEAFIAKFMSIYKK 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: D8SN98_SELML (AAA domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SN98_SELML)

HSP 1 Score: 190 bits (482), Expect = 1.580e-56
Identity = 94/171 (54.97%), Postives = 121/171 (70.76%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 171
            +RSRCL VR+ AP++ EI  VL  V K E +R+PP  A RIA  S RNLRRA+L LEACKV + P   +QPVQT DWE+YIV +A+DI+ +QSP  L   R K+YELLVNCIPP++V  +L+ EL K      KHE+  WAA++EH+ ++GQK  FH+EAF+AK M   KK
Sbjct:  177 VRSRCLNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRIALHSNRNLRRAILSLEACKVQQYPFTENQPVQTTDWEQYIVEIASDIVNEQSPKRLFIVRGKLYELLVNCIPPEIVLKRLLVELMKKLDSELKHEVCHWAAYHEHRMQLGQKAIFHLEAFVAKFMSVYKK 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A2C9VHU3_MANES (AAA domain-containing protein n=37 Tax=Pentapetalae TaxID=1437201 RepID=A0A2C9VHU3_MANES)

HSP 1 Score: 189 bits (479), Expect = 4.460e-56
Identity = 85/170 (50.00%), Postives = 125/170 (73.53%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 170
            +RSRCL VR+ +P++++I+ VL+ +GK EG+++PPG AARIA  S R+LRRA+L  E C+V + P  ++Q +  MDWE Y+  +A+DI+ +QSP  L + R K+YELL+NCIPP+++  +L+ EL K   E  KHE++ WAA+YEH+ R+GQK  FH+EAF+AK M   K
Sbjct:  177 IRSRCLNVRINSPSEEQIVKVLEFIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMDWEEYVSEIASDIMREQSPKKLFQIRGKLYELLINCIPPEIILKRLLYELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYK 346          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A9SKH1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SKH1_PHYPA)

HSP 1 Score: 189 bits (479), Expect = 4.460e-56
Identity = 91/171 (53.22%), Postives = 122/171 (71.35%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 171
            +RSRC+ +R+ +P++ +I+DVL  V K E + +PP LA RIA  S RNLRR++L LEACK  + P  A Q VQT DWE++IVG+A DI+ +QSP  L + R+K+YELLVNCIPP+V+  +L+DEL K      KHE+  WAA YEH+ + GQK  FH+EAF+AK M   KK
Sbjct:  177 VRSRCVNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEVQTTDWEQFIVGLANDIVTEQSPKKLFQVREKLYELLVNCIPPEVILKRLLDELMKKLDSELKHEVCHWAAFYEHRMQQGQKAIFHLEAFVAKFMSIYKK 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A5J5TSY0_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A5J5TSY0_GOSBA)

HSP 1 Score: 186 bits (473), Expect = 6.060e-56
Identity = 88/170 (51.76%), Postives = 120/170 (70.59%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 170
            +RSRCL +R+ AP+ ++I+ VL+ +GK EG+++P G AARIA  S RNLRRA+L  E C+V + P  ++Q +  MDWE YI  +A DI+ +QSP  L + R K+YELL+NCIPP++V  +L+ EL K      KHEI  WAA+YEH+ R+GQK  FHIEAF+AK M   K
Sbjct:  112 IRSRCLNIRINAPSAEQIVKVLEFIGKKEGLQLPSGFAARIAEKSNRNLRRAILSFETCRVQQYPFTSNQAIPPMDWEEYISEIATDIMKEQSPKRLFQVRGKVYELLINCIPPEIVLKRLLHELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK 281          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: UPI0018ADCD09 (replication factor C subunit 3 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADCD09)

HSP 1 Score: 188 bits (478), Expect = 6.300e-56
Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 0
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 170
            +RSRCL VRV APT ++I+ VL+ + K E +++PPG AARIA  S RNLRRA+L  E C+V + P  A+Q +  +DWE+Y+  +A+DI+ +QSP  L   R K+YELLVNCIPP+++  KL+ EL K      KHE+  WAA+YEHK R+GQK  FHIEAF+AK M   K
Sbjct:  177 IRSRCLNVRVNAPTHEQIVKVLEFIAKKESLQLPPGFAARIASQSNRNLRRAILSFETCRVQQYPFTANQAISPLDWEQYVSEIASDIMKEQSPKRLFLVRGKLYELLVNCIPPEIILKKLLSELLKKLDFELKHEVCHWAAYYEHKMRMGQKAIFHIEAFVAKFMSIYK 346          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I9RTX1_ELAGV1.360e-5753.53replication factor C subunit 3 n=4 Tax=commelinids... [more]
A0A6P5FSY3_ANACO1.410e-5753.80replication factor C subunit 5 n=2 Tax=Ananas como... [more]
A0A024TKG1_9STRA2.660e-5756.73Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]
B9SI66_RICCO4.080e-5752.15Replication factor C / DNA polymerase III gamma-ta... [more]
D5ADN5_PICSI1.120e-5652.63AAA domain-containing protein n=1 Tax=Picea sitche... [more]
D8SN98_SELML1.580e-5654.97AAA domain-containing protein n=3 Tax=Selaginella ... [more]
A0A2C9VHU3_MANES4.460e-5650.00AAA domain-containing protein n=37 Tax=Pentapetala... [more]
A9SKH1_PHYPA4.460e-5653.22Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A5J5TSY0_GOSBA6.060e-5651.76Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
UPI0018ADCD096.300e-5652.94replication factor C subunit 3 n=1 Tax=Dioscorea c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 14..73
e-value: 8.0E-7
score: 30.7
NoneNo IPR availableGENE3D1.20.272.10coord: 76..170
e-value: 1.1E-28
score: 101.2
NoneNo IPR availablePANTHERPTHR11669:SF1REPLICATION FACTOR C SUBUNIT 3coord: 1..170
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 1..170
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..61
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 75..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82258contigM-pyrifera_M_contig82258:400..912 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82258.19239.1mRNA_M-pyrifera_M_contig82258.19239.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig82258 400..912 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig82258.19239.1 ID=prot_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLR
RAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRA
RDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRI
GQKPEFHIEAFLAKTMFAIKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR008921DNA_pol3_clamp-load_cplx_C