mRNA_M-pyrifera_M_contig82258.19239.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A6I9RTX1_ELAGV (replication factor C subunit 3 n=4 Tax=commelinids TaxID=4734 RepID=A0A6I9RTX1_ELAGV) HSP 1 Score: 191 bits (485), Expect = 1.360e-57 Identity = 91/170 (53.53%), Postives = 123/170 (72.35%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510 +RSRCL +RV APT+++I+ VL+ +GK E +++PPG AARIA S R+LRRA+L LE C+V + P A+Q V MDWE+Y+ +A+DI+ +QSP L R K+YELLVNCIPP+++ KL+ EL K KHE+ WAA+YEH+ R+GQK FHIEAF+AK M K Sbjct: 125 VRSRCLNIRVNAPTEEQIIKVLEFIGKKENLQLPPGFAARIAAQSNRSLRRAILSLETCRVQQYPFTANQAVLPMDWEQYVSEIASDIIMEQSPKRLFLVRGKIYELLVNCIPPEIILKKLLSELLKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK 294
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A6P5FSY3_ANACO (replication factor C subunit 5 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FSY3_ANACO) HSP 1 Score: 192 bits (489), Expect = 1.410e-57 Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513 +RSRCL VRV APT++EI+ VL+ +GK E + +P G AARIA S RNLRRAVL E C+V + P A+Q V +DWE+Y+ +A DI+ +QSP L R K+YELLVNCIPP+++ KL+ EL + KHE+ WAAHYEHK R+G KP FH+EAF+AK M K+ Sbjct: 177 VRSRCLNVRVNAPTEEEIVKVLEFIGKKENLTLPAGFAARIAAQSNRNLRRAVLFFETCRVQQYPFAANQAVPPLDWEQYVSEIAGDIMKEQSPKRLFSVRGKLYELLVNCIPPEIILKKLLSELLRKLDSELKHEVCHWAAHYEHKMRLGSKPIFHLEAFVAKFMSIYKE 347
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A024TKG1_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKG1_9STRA) HSP 1 Score: 192 bits (487), Expect = 2.660e-57 Identity = 97/171 (56.73%), Postives = 120/171 (70.18%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513 LRSRCLG+R+GAPT +I VL V + E + P LA IA+ SERNLRRA+LMLE C+V + P +QP+Q +WE YI G+A D+L +QSP SLLRARDK YELL NCIPPDV+ L ELT + KH++A +AA YEH+ + GQKP FH+EAFLAK M KK Sbjct: 175 LRSRCLGIRIGAPTHDDITRVLQKVCEKESLTFCPPLAVEIAKKSERNLRRALLMLETCRVQQYPFSPTQPIQLPEWEEYICGLAKDVLQEQSPGSLLRARDKFYELLSNCIPPDVILKVLCRELTARLDDDLKHDLAHYAAFYEHRMQCGQKPIFHLEAFLAKFMTIYKK 345
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: B9SI66_RICCO (Replication factor C / DNA polymerase III gamma-tau subunit, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9SI66_RICCO) HSP 1 Score: 191 bits (485), Expect = 4.080e-57 Identity = 85/163 (52.15%), Postives = 123/163 (75.46%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLA 489 +RSRCL VR+ AP++++I+ VL+ +GK EG+++P G AAR+A S R+LRRAVL E C+V + P ++QP+ MDWE Y+ +A+DI+ +QSP L + R K+YELL+NCIPPD++ +LV+EL K E KHE++ WAA+YEH+ R+GQK FH+EAF+A Sbjct: 178 IRSRCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQYPFTSNQPIPPMDWEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVNELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVA 340
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: D5ADN5_PICSI (AAA domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ADN5_PICSI) HSP 1 Score: 190 bits (483), Expect = 1.120e-56 Identity = 90/171 (52.63%), Postives = 124/171 (72.51%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513 +RSRCL +R+ +P++++I+DVL+ + K EG+++P G RIA+ S RNLRRA+L EACKV + P +QP QT+DWE+YI +A+DI+ +QSP L R K+YELLVNCIPP+VV +L+ EL K KHE+ WAA+YEH+ R+GQK FH+EAF+AK M KK Sbjct: 177 VRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPEVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHLEAFIAKFMSIYKK 347
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: D8SN98_SELML (AAA domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SN98_SELML) HSP 1 Score: 190 bits (482), Expect = 1.580e-56 Identity = 94/171 (54.97%), Postives = 121/171 (70.76%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513 +RSRCL VR+ AP++ EI VL V K E +R+PP A RIA S RNLRRA+L LEACKV + P +QPVQT DWE+YIV +A+DI+ +QSP L R K+YELLVNCIPP++V +L+ EL K KHE+ WAA++EH+ ++GQK FH+EAF+AK M KK Sbjct: 177 VRSRCLNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRIALHSNRNLRRAILSLEACKVQQYPFTENQPVQTTDWEQYIVEIASDIVNEQSPKRLFIVRGKLYELLVNCIPPEIVLKRLLVELMKKLDSELKHEVCHWAAYHEHRMQLGQKAIFHLEAFVAKFMSVYKK 347
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A2C9VHU3_MANES (AAA domain-containing protein n=37 Tax=Pentapetalae TaxID=1437201 RepID=A0A2C9VHU3_MANES) HSP 1 Score: 189 bits (479), Expect = 4.460e-56 Identity = 85/170 (50.00%), Postives = 125/170 (73.53%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510 +RSRCL VR+ +P++++I+ VL+ +GK EG+++PPG AARIA S R+LRRA+L E C+V + P ++Q + MDWE Y+ +A+DI+ +QSP L + R K+YELL+NCIPP+++ +L+ EL K E KHE++ WAA+YEH+ R+GQK FH+EAF+AK M K Sbjct: 177 IRSRCLNVRINSPSEEQIVKVLEFIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMDWEEYVSEIASDIMREQSPKKLFQIRGKLYELLINCIPPEIILKRLLYELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYK 346
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A9SKH1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SKH1_PHYPA) HSP 1 Score: 189 bits (479), Expect = 4.460e-56 Identity = 91/171 (53.22%), Postives = 122/171 (71.35%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513 +RSRC+ +R+ +P++ +I+DVL V K E + +PP LA RIA S RNLRR++L LEACK + P A Q VQT DWE++IVG+A DI+ +QSP L + R+K+YELLVNCIPP+V+ +L+DEL K KHE+ WAA YEH+ + GQK FH+EAF+AK M KK Sbjct: 177 VRSRCVNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEVQTTDWEQFIVGLANDIVTEQSPKKLFQVREKLYELLVNCIPPEVILKRLLDELMKKLDSELKHEVCHWAAFYEHRMQQGQKAIFHLEAFVAKFMSIYKK 347
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A5J5TSY0_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A5J5TSY0_GOSBA) HSP 1 Score: 186 bits (473), Expect = 6.060e-56 Identity = 88/170 (51.76%), Postives = 120/170 (70.59%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510 +RSRCL +R+ AP+ ++I+ VL+ +GK EG+++P G AARIA S RNLRRA+L E C+V + P ++Q + MDWE YI +A DI+ +QSP L + R K+YELL+NCIPP++V +L+ EL K KHEI WAA+YEH+ R+GQK FHIEAF+AK M K Sbjct: 112 IRSRCLNIRINAPSAEQIVKVLEFIGKKEGLQLPSGFAARIAEKSNRNLRRAILSFETCRVQQYPFTSNQAIPPMDWEEYISEIATDIMKEQSPKRLFQVRGKVYELLINCIPPEIVLKRLLHELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK 281
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: UPI0018ADCD09 (replication factor C subunit 3 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADCD09) HSP 1 Score: 188 bits (478), Expect = 6.300e-56 Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 1 Query: 1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510 +RSRCL VRV APT ++I+ VL+ + K E +++PPG AARIA S RNLRRA+L E C+V + P A+Q + +DWE+Y+ +A+DI+ +QSP L R K+YELLVNCIPP+++ KL+ EL K KHE+ WAA+YEHK R+GQK FHIEAF+AK M K Sbjct: 177 IRSRCLNVRVNAPTHEQIVKVLEFIAKKESLQLPPGFAARIASQSNRNLRRAILSFETCRVQQYPFTANQAISPLDWEQYVSEIASDIMKEQSPKRLFLVRGKLYELLVNCIPPEIILKKLLSELLKKLDFELKHEVCHWAAYYEHKMRMGQKAIFHIEAFVAKFMSIYK 346 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig82258.19239.1 >prot_M-pyrifera_M_contig82258.19239.1 ID=prot_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRback to top mRNA from alignment at M-pyrifera_M_contig82258:400..912- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig82258.19239.1 ID=mRNA_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig82258:400..912- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig82258:400..912- >mRNA_M-pyrifera_M_contig82258.19239.1 ID=mRNA_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig82258:400..912- (Macrocystis pyrifera P11B4 male)back to top |