mRNA_M-pyrifera_M_contig82249.19237.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82249.19237.1
Unique NamemRNA_M-pyrifera_M_contig82249.19237.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A813BY38_9DINO (Stx16 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BY38_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 7.800e-19
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVIIIAVRK 186
            V+QGTLLDRIDHN+DMT+  VKEGV HL+ AE+ QKSARP +CI  L  +II++++IIAVRK
Sbjct:   84 VDQGTLLDRIDHNVDMTLDTVKEGVKHLESAEKSQKSARPMWCIAALMALIIIMIVIIAVRK 145
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A4Y7NI54_9CRUS (EOG090X0AQP n=1 Tax=Megafenestra aurita TaxID=2291010 RepID=A0A4Y7NI54_9CRUS)

HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    4 EQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVIIIAVRK 186
            +QGT+LDRID+NI+ T  +V++G+ HL++AE YQK  R   CI+GL   I+VL+II+ V K
Sbjct:  256 DQGTVLDRIDYNIENTQAKVQDGLVHLQKAESYQKKNRKMVCIVGLVSTIVVLIIILIVVK 316
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: UPI00109BBC14 (syntaxin-16 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BBC14)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-10
Identity = 28/62 (45.16%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVIIIAVRK 186
            VEQGT+LDRID+N++    +V++G+  LK+AE++QKS+R   CII L++V+I++++ + + K
Sbjct:  281 VEQGTILDRIDYNVEQASVKVEQGLEQLKKAEQHQKSSRKMLCIIFLSVVVIIMLVALVITK 342
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A7S2RXE8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXE8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.460e-10
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTI 147
            ++QGT+LDRID+N++  V RV++GV  L++AE+YQKSARP +CI  L +
Sbjct:   87 IDQGTILDRIDYNMEQVVERVEDGVVALEKAEQYQKSARPRWCICALLV 135
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A2W1BRA1_HELAM (t-SNARE coiled-coil homology domain-containing protein n=11 Tax=Noctuidae TaxID=7100 RepID=A0A2W1BRA1_HELAM)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-9
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    4 EQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVIIIAVRK 186
            EQGT+LDRID+NI+ T  +V EG   L++AE YQ+S R  +CI+ L + IIVLVI++ + K
Sbjct:  274 EQGTILDRIDYNIEQTQVQVHEGYKQLQKAERYQRSNRKMHCILMLGVTIIVLVILLIIVK 334
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A7S4MBC4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBC4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-9
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVIIIAVR 183
            ++QGT+LDRID+N++  V   K G+  L++AE++QKSARP  CII L  VI +L++I+ V+
Sbjct:  270 IDQGTILDRIDYNMEAVVEHTKTGIQQLERAEKHQKSARPMKCIIFLLCVIAILLVILVVK 330
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A3P7N675_9BILA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A3P7N675_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-9
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVIIIAVRK 186
            V+QGT+LDRID+N++    RVK  +  +++AE+YQ+  R  YCI+ L+I IIVL+I++ + K
Sbjct:   69 VDQGTVLDRIDYNVEQATLRVKSALTSVQRAEKYQRGDRKMYCIVILSISIIVLLILLIIVK 130
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: A0A7S2RXE3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXE3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-9
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTI 147
            ++QGT+LDRID+N++  V RV++GV  L++AE+YQKSARP +CI  L +
Sbjct:  253 IDQGTILDRIDYNMEQVVERVEDGVVALEKAEQYQKSARPRWCICALLV 301
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: D8MB60_BLAHO (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MB60_BLAHO)

HSP 1 Score: 59.3 bits (142), Expect = 1.390e-9
Identity = 28/54 (51.85%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVL 162
            +EQGT++DRID+N+D  VT+V+EG+  + +AEEY+KS+RP Y I+ + I+II++
Sbjct:   75 IEQGTIVDRIDYNMDQAVTKVREGLQQVVKAEEYKKSSRP-YGIMAVMILIIII 127
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BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Match: UPI0007119862 (syntaxin n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007119862)

HSP 1 Score: 61.2 bits (147), Expect = 1.580e-9
Identity = 27/56 (48.21%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIVIIVLVI 168
            +EQGT++DRID+N+D  V +VKEG+  + +AEEY+KS+RP+  I  L ++I+V ++
Sbjct:  219 IEQGTIVDRIDYNMDQAVVKVKEGLQQVVKAEEYKKSSRPYTIIAVLVLIIVVCIV 274
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82249.19237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BY38_9DINO7.800e-1966.13Stx16 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A4Y7NI54_9CRUS1.020e-1052.46EOG090X0AQP n=1 Tax=Megafenestra aurita TaxID=2291... [more]
UPI00109BBC142.110e-1045.16syntaxin-16 isoform X1 n=2 Tax=Exaiptasia diaphana... [more]
A0A7S2RXE8_9STRA2.460e-1055.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2W1BRA1_HELAM1.010e-952.46t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S4MBC4_9STRA1.020e-949.18Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A3P7N675_9BILA1.210e-946.77t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2RXE3_9STRA1.340e-955.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8MB60_BLAHO1.390e-951.85t-SNARE coiled-coil homology domain-containing pro... [more]
UPI00071198621.580e-948.21syntaxin n=1 Tax=Blastocystis sp. subtype 4 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82249contigM-pyrifera_M_contig82249:628..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score61.2
Seed ortholog evalue2e-07
Seed eggNOG ortholog6669.EFX84801
Preferred nameSyx16
KEGG koko:K08489
KEGG Pathwayko04130,map04130
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000149,GO:0000323,GO:0001505,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005794,GO:0005886,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006904,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0017156,GO:0022406,GO:0023052,GO:0023061,GO:0031090,GO:0031201,GO:0031224,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048489,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097479,GO:0097480,GO:0098588,GO:0098791,GO:0098796,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056
EggNOG free text desc.Glycosyltransferase like family
EggNOG OGs38EFK@33154,3BDGN@33208,3CT2I@33213,41V7W@6656,COG5325@1,KOG0809@2759
COG Functional cat.HMU
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.549422-CDS-M-pyrifera_M_contig82249:627..8191622816729.549422-CDS-M-pyrifera_M_contig82249:627..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82249 628..819 -
1692278144.5140586-CDS-M-pyrifera_M_contig82249:627..8191692278144.5140586-CDS-M-pyrifera_M_contig82249:627..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82249 628..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82249.19237.1prot_M-pyrifera_M_contig82249.19237.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82249 628..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82249.19237.1

>prot_M-pyrifera_M_contig82249.19237.1 ID=prot_M-pyrifera_M_contig82249.19237.1|Name=mRNA_M-pyrifera_M_contig82249.19237.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
VEQGTLLDRIDHNIDMTVTRVKEGVGHLKQAEEYQKSARPFYCIIGLTIV
IIVLVIIIAVRKL*
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mRNA from alignment at M-pyrifera_M_contig82249:628..819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82249.19237.1 ID=mRNA_M-pyrifera_M_contig82249.19237.1|Name=mRNA_M-pyrifera_M_contig82249.19237.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig82249:628..819- (Macrocystis pyrifera P11B4 male)
GTGGAGCAAGGCACTCTCTTGGACCGCATCGACCACAACATTGATATGAC
TGTGACCCGAGTGAAGGAAGGGGTGGGGCACTTGAAGCAAGCGGAAGAGT
ATCAAAAGTCGGCCAGACCATTCTATTGCATTATTGGACTCACCATTGTC
ATCATTGTACTTGTCATCATCATTGCAGTGCGAAAACTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82249:628..819-

>mRNA_M-pyrifera_M_contig82249.19237.1 ID=mRNA_M-pyrifera_M_contig82249.19237.1|Name=mRNA_M-pyrifera_M_contig82249.19237.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig82249:628..819- (Macrocystis pyrifera P11B4 male)
GTGGAGCAAGGCACTCTCTTGGACCGCATCGACCACAACATTGATATGAC
TGTGACCCGAGTGAAGGAAGGGGTGGGGCACTTGAAGCAAGCGGAAGAGT
ATCAAAAGTCGGCCAGACCATTCTATTGCATTATTGGACTCACCATTGTC
ATCATTGTACTTGTCATCATCATTGCAGTGCGAAAACTGTAGGTGGAGCA
AGGCACTCTCTTGGACCGCATCGACCACAACATTGATATGACTGTGACCC
GAGTGAAGGAAGGGGTGGGGCACTTGAAGCAAGCGGAAGAGTATCAAAAG
TCGGCCAGACCATTCTATTGCATTATTGGACTCACCATTGTCATCATTGT
ACTTGTCATCATCATTGCAGTGCGAAAACTGTAG
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