mRNA_M-pyrifera_M_contig82246.19236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82246.19236.1
Unique NamemRNA_M-pyrifera_M_contig82246.19236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: UPI000440A3F8 (WD40 repeat-like protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440A3F8)

HSP 1 Score: 91.3 bits (225), Expect = 9.840e-19
Identity = 60/152 (39.47%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    1 MADGGETEAPPVTYVADDGEDGVFDAKDV-EVVADLRDEG-DDGEVEGKGDGEDXXXXXXXXXXXDEDVPDPAVARFIGHGDSVYDVAVHPTLPWALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            M+  G  E  P T    + E+G  +A DV EV+AD  D   D+GE E    GE            D    D ++  F  H  SV+ V+ HPT P A+SGG DD  + W ++ G ++++L    HTDSV A GFSADG L AT G+D +++IW
Sbjct:    1 MSSSGHHEVDP-TIEGQEDEEGYLEADDVYEVIADDGDHPMDEGEDENDQLGELPSGMEGGSGEGDIVYEDNSIQHFPAHRQSVFAVSAHPTAPLAVSGGEDDLGYIWDLETGNEIVKLTG--HTDSVSATGFSADGELVATGGMDGRVRIW 149          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A165NV88_9AGAM (WD40 repeat-like protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165NV88_9AGAM)

HSP 1 Score: 88.6 bits (218), Expect = 8.440e-18
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  133 EGKGDGEDXXXXXXXXXXXDEDVPDPAVARFIGHGDSVYDVAVHPTLPWALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            EG+GDGE            D    D ++  F  H  SV+ VA HPT P A SGG DD  + W +  G ++++L    HTDSV ++GFSADG + +T G+D K++IW
Sbjct:   35 EGQGDGEPMDDEDMDVAGEDIVYEDSSIQHFPTHQKSVFCVATHPTQPLAASGGEDDLGYIWDITTGDEIVRLTG--HTDSVTSIGFSADGEMLSTGGMDGKLRIW 138          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A4S4L669_9AGAM (Uncharacterized protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L669_9AGAM)

HSP 1 Score: 87.8 bits (216), Expect = 1.850e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  205 DPAVARFIGHGDSVYDVAVHPTLPWALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            D ++  F  H  SV+ V++HPT P A SGG DD  + W++Q+G+ +++L    HTDSV A GFSADG L AT G+D KI+IW
Sbjct:   66 DNSLQHFPTHESSVFAVSMHPTQPIAASGGEDDLGYLWNVQDGEVIVKLTG--HTDSVTATGFSADGELIATGGMDGKIRIW 145          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A1Y2FWG6_9BASI (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FWG6_9BASI)

HSP 1 Score: 87.0 bits (214), Expect = 3.510e-17
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  205 DPAVARFIGHGDSVYDVAVHPTLPW-ALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            D + A+F+GH  +V+ VA+HPT    A+SGG DD AH W   NG+ +I+L+   HTDSV +VGFS DG + AT G+D +++IW
Sbjct:   76 DDSFAQFVGHEAAVFAVALHPTDALIAVSGGEDDLAHLWRTDNGETIIKLDG--HTDSVTSVGFSFDGEMVATGGMDGRVRIW 156          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: UPI0004407E84 (WD40 repeat-like protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004407E84)

HSP 1 Score: 86.7 bits (213), Expect = 4.310e-17
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  205 DPAVARFIGHGDSVYDVAVHPTLPWALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            D +V  F  HG SV+ +++HPT P A+SGG DD  + W++Q G+ +++L    HTDSV + GFSADG L +T G+D  ++IW
Sbjct:   66 DNSVQHFPEHGKSVFAISMHPTQPIAVSGGEDDFGYLWNVQTGETIVKLTG--HTDSVTSTGFSADGELVSTGGMDGHVRIW 145          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A177U0V3_9BASI (Uncharacterized protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177U0V3_9BASI)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  199 VPDPAVARFIGHG-DSVYDVAVHPTLP---WALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            + D +++ F  H   SV+ +A+HP  P   WALSGG DD AH W   +GQ V  LE   HTDSV++VG+SADGS+ A+A +D  +++W
Sbjct:   60 IQDTSLSSFPAHAPSSVFTIALHPAYPSPSWALSGGEDDRAHIWDTLSGQLVAVLEG--HTDSVISVGWSADGSMAASASMDGTVRVW 145          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A5C3MQU9_9AGAM (WD40 repeat-like protein n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3MQU9_9AGAM)

HSP 1 Score: 84.0 bits (206), Expect = 3.880e-16
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  205 DPAVARFIGHGDSVYDVAVHPTLPWALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            D ++  F  H  SV+ VA HPT P A SG  DD  + W +  GQ++++L    HTDSV ++GFSADG + +T G+D K++IW
Sbjct:   60 DSSIQHFPTHEKSVFCVATHPTQPLAASGAEDDLGYIWDIATGQEIVKLTG--HTDSVSSIGFSADGEMLSTGGMDGKVRIW 139          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: UPI001E8E9340 (ribosome biogenesis protein Sqt1 n=1 Tax=Lentinula edodes TaxID=5353 RepID=UPI001E8E9340)

HSP 1 Score: 84.0 bits (206), Expect = 3.950e-16
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  199 VPDPAVARFIGHGDSVYDVAVHPTLPWALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            V D +V  F  H  SV+ VAVHPT P A+SGG DD  + W + +G+ +++L    H+DSVV VG+S DG + +T G+D KI++W
Sbjct:   58 VEDNSVQSFPNHQSSVFAVAVHPTQPLAVSGGEDDLGYIWDITDGEVIVKLTG--HSDSVVCVGWSYDGEIVSTGGMDGKIRLW 139          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A177U8A9_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U8A9_9BASI)

HSP 1 Score: 84.0 bits (206), Expect = 5.130e-16
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  199 VPDPAVARFIGHG-DSVYDVAVHPTLP---WALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            + D ++A F  H   SV+ +++HPT P   WALSGG DD AH W    GQ V  LE   HTDSV+ VG+SADG + ATA +D  +++W
Sbjct:   57 IQDTSLASFPAHAPSSVFTLSLHPTFPNPPWALSGGEDDRAHIWDTLTGQPVALLEG--HTDSVINVGWSADGKMAATASMDGTVRVW 142          
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Match: A0A2N1J831_9BASI (Uncharacterized protein n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1J831_9BASI)

HSP 1 Score: 83.6 bits (205), Expect = 6.060e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  190 DEDVPDPAVARFIGHGDSVYDVAVHPTLPW---ALSGGGDDTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW 450
            DE+  D ++A F  H  S++ V +HP+ P    A+SGG DD A  W+  +G +V QL    HTDSVVAV FSADG + AT GLD ++++W
Sbjct:   51 DEEFRDDSIAAFYSHRKSIFCVTLHPSFPHPSLAVSGGEDDGAWIWNTIDGAEVAQLGG--HTDSVVAVAFSADGEMVATGGLDGRVRVW 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82246.19236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000440A3F89.840e-1939.47WD40 repeat-like protein n=1 Tax=Stereum hirsutum ... [more]
A0A165NV88_9AGAM8.440e-1841.51WD40 repeat-like protein n=1 Tax=Neolentinus lepid... [more]
A0A4S4L669_9AGAM1.850e-1750.00Uncharacterized protein n=1 Tax=Phellinidium pouza... [more]
A0A1Y2FWG6_9BASI3.510e-1749.40Quinon protein alcohol dehydrogenase-like superfam... [more]
UPI0004407E844.310e-1746.34WD40 repeat-like protein n=1 Tax=Fomitiporia medit... [more]
A0A177U0V3_9BASI1.030e-1646.59Uncharacterized protein n=1 Tax=Tilletia controver... [more]
A0A5C3MQU9_9AGAM3.880e-1645.12WD40 repeat-like protein n=1 Tax=Heliocybe sulcata... [more]
UPI001E8E93403.950e-1646.43ribosome biogenesis protein Sqt1 n=1 Tax=Lentinula... [more]
A0A177U8A9_9BASI5.130e-1647.73Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A2N1J831_9BASI6.060e-1646.67Uncharacterized protein n=1 Tax=Malassezia vespert... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82246contigM-pyrifera_M_contig82246:48..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score93.2
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog40492.XP_007299740.1
Preferred nameSQT1
KEGG koko:K14818
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0051082,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904
EggNOG free text desc.WD40 repeat-like protein
EggNOG OGs225T2@155619,38CNS@33154,3H3QF@355688,3P189@4751,3UYET@5204,KOG0296@1,KOG0296@2759
COG Functional cat.S
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.514282-CDS-M-pyrifera_M_contig82246:47..4971622816729.514282-CDS-M-pyrifera_M_contig82246:47..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82246 48..497 -
1692278144.5030634-CDS-M-pyrifera_M_contig82246:47..4971692278144.5030634-CDS-M-pyrifera_M_contig82246:47..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82246 48..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82246.19236.1prot_M-pyrifera_M_contig82246.19236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82246 48..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82246.19236.1

>prot_M-pyrifera_M_contig82246.19236.1 ID=prot_M-pyrifera_M_contig82246.19236.1|Name=mRNA_M-pyrifera_M_contig82246.19236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MADGGETEAPPVTYVADDGEDGVFDAKDVEVVADLRDEGDDGEVEGKGDG
EDGGEGEEDVEGDDEDVPDPAVARFIGHGDSVYDVAVHPTLPWALSGGGD
DTAHFWSMQNGQDVIQLETPTHTDSVVAVGFSADGSLFATAGLDHKIKIW
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mRNA from alignment at M-pyrifera_M_contig82246:48..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82246.19236.1 ID=mRNA_M-pyrifera_M_contig82246.19236.1|Name=mRNA_M-pyrifera_M_contig82246.19236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig82246:48..497- (Macrocystis pyrifera P11B4 male)
ATGGCAGATGGAGGTGAAACTGAAGCGCCTCCTGTGACCTATGTTGCAGA TGATGGTGAAGATGGTGTATTTGATGCAAAAGATGTCGAGGTTGTTGCTG ATTTGAGAGACGAAGGAGATGATGGGGAAGTGGAAGGCAAAGGAGACGGA GAAGATGGAGGTGAAGGCGAGGAAGATGTTGAAGGTGATGATGAAGATGT CCCAGATCCAGCAGTTGCACGATTCATTGGCCATGGAGACTCTGTATACG ATGTTGCGGTACACCCAACTCTTCCTTGGGCATTGAGTGGCGGTGGAGAT GATACTGCTCACTTTTGGTCTATGCAAAATGGCCAAGATGTGATTCAGCT GGAAACTCCAACACATACTGATTCCGTGGTCGCAGTAGGGTTTTCAGCAG ATGGCTCTCTGTTTGCAACTGCTGGATTAGATCATAAAATCAAAATTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82246:48..497-

>mRNA_M-pyrifera_M_contig82246.19236.1 ID=mRNA_M-pyrifera_M_contig82246.19236.1|Name=mRNA_M-pyrifera_M_contig82246.19236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig82246:48..497- (Macrocystis pyrifera P11B4 male)
ATGGCAGATGGAGGTGAAACTGAAGCGCCTCCTGTGACCTATGTTGCAGA
TGATGGTGAAGATGGTGTATTTGATGCAAAAGATGTCGAGGTTGTTGCTG
ATTTGAGAGACGAAGGAGATGATGGGGAAGTGGAAGGCAAAGGAGACGGA
GAAGATGGAGGTGAAGGCGAGGAAGATGTTGAAGGTGATGATGAAGATGT
CCCAGATCCAGCAGTTGCACGATTCATTGGCCATGGAGACTCTGTATACG
ATGTTGCGGTACACCCAACTCTTCCTTGGGCATTGAGTGGCGGTGGAGAT
GATACTGCTCACTTTTGGTCTATGCAAAATGGCCAAGATGTGATTCAGCT
GGAAACTCCAACACATACTGATTCCGTGGTCGCAGTAGGGTTTTCAGCAG
ATGGCTCTCTGTTTGCAACTGCTGGATTAGATCATAAAATCAAAATTTGG
ATGGCAGATGGAGGTGAAACTGAAGCGCCTCCTGTGACCTATGTTGCAGA
TGATGGTGAAGATGGTGTATTTGATGCAAAAGATGTCGAGGTTGTTGCTG
ATTTGAGAGACGAAGGAGATGATGGGGAAGTGGAAGGCAAAGGAGACGGA
GAAGATGGAGGTGAAGGCGAGGAAGATGTTGAAGGTGATGATGAAGATGT
CCCAGATCCAGCAGTTGCACGATTCATTGGCCATGGAGACTCTGTATACG
ATGTTGCGGTACACCCAACTCTTCCTTGGGCATTGAGTGGCGGTGGAGAT
GATACTGCTCACTTTTGGTCTATGCAAAATGGCCAAGATGTGATTCAGCT
GGAAACTCCAACACATACTGATTCCGTGGTCGCAGTAGGGTTTTCAGCAG
ATGGCTCTCTGTTTGCAACTGCTGGATTAGATCATAAAATCAAAATTTGG
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