mRNA_M-pyrifera_M_contig82243.19235.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82243.19235.1
Unique NamemRNA_M-pyrifera_M_contig82243.19235.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82243.19235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82243contigM-pyrifera_M_contig82243:14..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001665.1
Exons2
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.4644415-CDS-M-pyrifera_M_contig82243:13..2371622816729.4644415-CDS-M-pyrifera_M_contig82243:13..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82243 14..237 +
1692278144.479199-CDS-M-pyrifera_M_contig82243:13..2371692278144.479199-CDS-M-pyrifera_M_contig82243:13..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82243 14..237 +
1622816729.4784594-CDS-M-pyrifera_M_contig82243:312..7961622816729.4784594-CDS-M-pyrifera_M_contig82243:312..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82243 313..796 +
1692278144.4912305-CDS-M-pyrifera_M_contig82243:312..7961692278144.4912305-CDS-M-pyrifera_M_contig82243:312..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82243 313..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82243.19235.1prot_M-pyrifera_M_contig82243.19235.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82243 14..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82243.19235.1

>prot_M-pyrifera_M_contig82243.19235.1 ID=prot_M-pyrifera_M_contig82243.19235.1|Name=mRNA_M-pyrifera_M_contig82243.19235.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=236bp
ALRAVDRNGDGLLSRKDLAEGLSLAGAFLALPEVGLLVRAFAPSPDATRG
TLAVVERGFVPAEALLDALRAGEAVGEAVSFDRMVASMALEKHPDVRKGL
RTASDLAALLRRELADSEGLVTREAFEAYWKDVSVLDPSDASFVETLCGV
HGVEEHPPSSAVAKSVGAIEALLREAARKRAHGTETERSALARLFRAFDA
RGDGDGLMDMDEFAAACEHMAVPVPDGVRNAVFLAH
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mRNA from alignment at M-pyrifera_M_contig82243:14..796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82243.19235.1 ID=mRNA_M-pyrifera_M_contig82243.19235.1|Name=mRNA_M-pyrifera_M_contig82243.19235.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=783bp|location=Sequence derived from alignment at M-pyrifera_M_contig82243:14..796+ (Macrocystis pyrifera P11B4 male)
GCGCTGCGTGCGGTGGACCGCAACGGGGACGGTCTCTTGAGCCGGAAAGA
CCTGGCAGAGGGCCTATCTCTCGCCGGCGCCTTTTTGGCGCTTCCCGAGG
TGGGTCTGCTCGTGCGCGCCTTCGCTCCCTCCCCGGACGCAACTAGAGGC
ACTCTCGCAGTGGTGGAGCGCGGGTTCGTCCCGGCAGAAGCGCTCCTGGA
CGCGCTACGGGCAGGAGAAGCCGTGTCGGAGCGTCGAATGGCAGCGATTG
CACGAGTGGCGGATGCGCTGGGCTTGCGTGCTGGCGGGGGCGATGGCAGC
GGCGAAGCAGTGTCCTTTGACCGAATGGTGGCGTCCATGGCGCTGGAGAA
GCACCCAGACGTGCGAAAAGGGCTGCGGACTGCTTCCGATCTTGCGGCAT
TGCTGCGTCGCGAATTGGCCGATTCCGAGGGCCTGGTGACGCGAGAGGCC
TTCGAGGCGTACTGGAAGGACGTGTCGGTGCTGGACCCGTCGGATGCGTC
CTTCGTGGAGACGCTGTGTGGGGTGCATGGGGTGGAAGAGCACCCGCCTT
CTTCGGCAGTCGCCAAATCCGTGGGCGCAATCGAGGCTTTGCTGCGAGAA
GCCGCCCGCAAGAGGGCGCATGGCACTGAGACGGAGCGGTCTGCGCTGGC
ACGTCTCTTTCGTGCCTTCGACGCGCGCGGAGACGGCGATGGGCTCATGG
ATATGGACGAATTCGCCGCCGCGTGCGAGCACATGGCCGTTCCAGTGCCG
GATGGCGTCCGAAACGCAGTCTTCCTCGCCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82243:14..796+

>mRNA_M-pyrifera_M_contig82243.19235.1 ID=mRNA_M-pyrifera_M_contig82243.19235.1|Name=mRNA_M-pyrifera_M_contig82243.19235.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1416bp|location=Sequence derived from alignment at M-pyrifera_M_contig82243:14..796+ (Macrocystis pyrifera P11B4 male)
GCGCTGCGTGCGGTGGACCGCAACGGGGACGGTCTCTTGAGCCGGAAAGA
CCTGGCAGAGGGCCTATCTCTCGCCGGCGCCTTTTTGGCGCTTCCCGAGG
TGGGTCTGCTCGTGCGCGCCTTCGCTCCCTCCCCGGACGCAACTAGAGGC
ACTCTCGCAGTGGTGGAGCGCGGGTTCGTCCCGGCAGAAGCGCTCCTGGA
CGCGCTACGGGCAGGAGAAGCCGTGCGCTGCGTGCGGTGGACCGCAACGG
GGACGGTCTCTTGAGCCGGAAAGACCTGGCAGAGGGCCTATCTCTCGCCG
GCGCCTTTTTGGCGCTTCCCGAGGTGGGTCTGCTCGTGCGCGCCTTCGCT
CCCTCCCCGGACGCAACTAGAGGCACTCTCGCAGTGGTGGAGCGCGGGTT
CGTCCCGGCAGAAGCGCTCCTGGACGCGCTACGGGCAGGAGAAGCCGTCG
GCGAAGCAGTGTCCTTTGACCGAATGGTGGCGTCCATGGCGCTGGAGAAG
CACCCAGACGTGCGAAAAGGGCTGCGGACTGCTTCCGATCTTGCGGCATT
GCTGCGTCGCGAATTGGCCGATTCCGAGGGCCTGGTGACGCGAGAGGCCT
TCGAGGCGTACTGGAAGGACGTGTCGGTGCTGGACCCGTCGGATGCGTCC
TTCGTGGAGACGCTGTGTGGGGTGCATGGGGTGGAAGAGCACCCGCCTTC
TTCGGCAGTCGCCAAATCCGTGGGCGCAATCGAGGCTTTGCTGCGAGAAG
CCGCCCGCAAGAGGGCGCATGGCACTGAGACGGAGCGGTCTGCGCTGGCA
CGTCTCTTTCGTGCCTTCGACGCGCGCGGAGACGGCGATGGGCTCATGGA
TATGGACGAATTCGCCGCCGCGTGCGAGCACATGGCCGTTCCAGTGCCGG
ATGGCGTCCGAAACGCAGTCTTCCTCGCCCACCGGCGAAGCAGTGTCCTT
TGACCGAATGGTGGCGTCCATGGCGCTGGAGAAGCACCCAGACGTGCGAA
AAGGGCTGCGGACTGCTTCCGATCTTGCGGCATTGCTGCGTCGCGAATTG
GCCGATTCCGAGGGCCTGGTGACGCGAGAGGCCTTCGAGGCGTACTGGAA
GGACGTGTCGGTGCTGGACCCGTCGGATGCGTCCTTCGTGGAGACGCTGT
GTGGGGTGCATGGGGTGGAAGAGCACCCGCCTTCTTCGGCAGTCGCCAAA
TCCGTGGGCGCAATCGAGGCTTTGCTGCGAGAAGCCGCCCGCAAGAGGGC
GCATGGCACTGAGACGGAGCGGTCTGCGCTGGCACGTCTCTTTCGTGCCT
TCGACGCGCGCGGAGACGGCGATGGGCTCATGGATATGGACGAATTCGCC
GCCGCGTGCGAGCACATGGCCGTTCCAGTGCCGGATGGCGTCCGAAACGC
AGTCTTCCTCGCCCAC
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