mRNA_M-pyrifera_M_contig822.19225.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig822.19225.1
Unique NamemRNA_M-pyrifera_M_contig822.19225.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig822.19225.1 vs. uniprot
Match: D8LNR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR7_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.200e-26
Identity = 73/106 (68.87%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 MRVALATARALGFASRRARRGRRPCFAEPG---APNPR-GPQA-GPRTAP---APTGRMSEEFVMSRSQLGAVAMLAIQIR-AVCS-GVDDFSLELEGEGDDDDGT 288
            MRV LATARALGF +RRARRGR PC ++ G    PN   GPQA GPRTA    A  GRM EEFVMSRSQLGA  +LA QIR AVCS G  DFSLE+EG+GDDDDGT
Sbjct:    1 MRVGLATARALGFVTRRARRGRGPC-SQSGLHRTPNAAAGPQAAGPRTASSSAASQGRMVEEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEVEGDGDDDDGT 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig822.19225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR7_ECTSI7.200e-2668.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig822contigM-pyrifera_M_contig822:21202..24576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size291
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig822.19225.1prot_M-pyrifera_M_contig822.19225.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig822 21202..24576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.0362654-CDS-M-pyrifera_M_contig822:21201..212691622816729.0362654-CDS-M-pyrifera_M_contig822:21201..21269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig822 21202..21269 +
1692278144.2997465-CDS-M-pyrifera_M_contig822:21201..212691692278144.2997465-CDS-M-pyrifera_M_contig822:21201..21269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig822 21202..21269 +
1622816729.0482898-CDS-M-pyrifera_M_contig822:21547..216501622816729.0482898-CDS-M-pyrifera_M_contig822:21547..21650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig822 21548..21650 +
1692278144.308917-CDS-M-pyrifera_M_contig822:21547..216501692278144.308917-CDS-M-pyrifera_M_contig822:21547..21650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig822 21548..21650 +
1622816729.0589306-CDS-M-pyrifera_M_contig822:24456..245761622816729.0589306-CDS-M-pyrifera_M_contig822:24456..24576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig822 24457..24576 +
1692278144.3173218-CDS-M-pyrifera_M_contig822:24456..245761692278144.3173218-CDS-M-pyrifera_M_contig822:24456..24576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig822 24457..24576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig822.19225.1

>prot_M-pyrifera_M_contig822.19225.1 ID=prot_M-pyrifera_M_contig822.19225.1|Name=mRNA_M-pyrifera_M_contig822.19225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MRVALATARALGFASRRARRGRRPCFAEPGAPNPRGPQAGPRTAPAPTGR
MSEEFVMSRSQLGAVAMLAIQIRAVCSGVDDFSLELEGEGDDDDGT*
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mRNA from alignment at M-pyrifera_M_contig822:21202..24576+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig822.19225.1 ID=mRNA_M-pyrifera_M_contig822.19225.1|Name=mRNA_M-pyrifera_M_contig822.19225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3375bp|location=Sequence derived from alignment at M-pyrifera_M_contig822:21202..24576+ (Macrocystis pyrifera P11B4 male)
ATGAGAGTTGCATTGGCCACAGCAAGGGCATTGGGCTTCGCTTCTAGGAG
GGCGCGGCGAGGACGAAGGTATGATTGTCACTTGTCATCGCGTTCGACGT
TCGTTGCGTTTTCGACAAAGTACATCACATGTTCTCTTTCCCAGTATCAA
CTGCTTCCTAGGGGCTTCGGCTCTCGGCTGCCTATATATGTATGTAGGGG
CTCTCTGCTGCGCTGACTGTCCAGTGTATCGGGCACAGTTCACAGTTCGT
CATAGACAGTATTGTAGATGCATGCTACATGTAGTTTTTTTTTCGAGGTT
GATATGCGGTCTCTCCTTCCTGCTGAACACTTTGTGTTGCGTGCAGGCCA
TGCTTTGCAGAGCCTGGGGCACCCAATCCGCGAGGCCCTCAAGCAGGGCC
ACGAACAGCACCCGCACCAACGGGGCGTATGTCCGAGGAGTTTGTGATGG
TGAGCTGGCTCCCTGTTGTCCTGCTCTCAAGTGTTGCTACCACGCCGCGA
TAGGCCAATTCTGAAAGAGATGACTATTCTCGTTCGTCTACCTGCTGCTA
TACCAGGACGAGTGCTCCATAAATCGTGTTTGGTTGTCGTCTGCCAGTAT
GTACCTGTCCTACTCTCAAGTCCTAAGCACCATGCGTGCCACCAGGTACC
CATGTTGGTTCTCTTGATATCGATACTCGTAGCTGTTGAAGCTGGAGGCC
TGGAACCTGGAACGTTGCGGTACACATGGGTAGAGCCCTGTTCAGTCGTC
CATTTAGTCACCGTGTAAGTTTGTATTATATCACGCAGCAAAACTGGGCA
CCATGCCGTGCCCGACTGCGTGCCGGGCAGTGCTCTCGTCGAGATTCCAT
ACCTCGACCTCGTTGGTATACACAAAAGCTTTCACATGGCTTGTTCCTTC
CTCGGTTTATACCACGAGTCAAGCCGTGGCGCAGATTCGTCCATTCTGCA
GCTGACGGCAGCCATGACAGATGACGACCGTATCCAATAGCGGGGTCTAT
ATGAGGCGGTATATACAGTGCGCCGAGATTAACCGCCTCATGTCGAGTGG
CCGCCCTATTCGTTTTCTCGAGTTGTCGATTCGTTTTCTCGAGTTGTAGC
CATATGCATACTGCCTTGTATATGGCCCCACTACGTTATACGTGGACGTC
ATATTCACCGACGTTGGGGGTTTAGGTTTTAGCGCAACGCCTGCGTAGCT
ACGAGTATCACTCCTCTGCTGCCTGTATATTGTCACTTGTTAGCTGATTG
TGCTTGTCATGCCTACAGCCGGAGTTCTTGGGGGTATAGTCGTAGCCACA
CCTTCCCCCCTCGATGCTTCCTCACGATGGTCTCCCACTCATCACTACCA
TCGACCCCGGGAGCTCGGGGGCGCAACGTGTCGCCATGGATTCCACCTCC
TTCCCGACGCTCTCACAAGAACAGCGAAAAAAAAATCAGGACCACGTGGA
CCGACAATTCAGCGAGCAGCTAGCAGCACCCCAGCAGGAAGCAACCGCAC
CCGTGCACTGGAGGAGGCAAGATAGGAGAGCACGCAAAGTCCAGGACCAG
GAACCTATAGTGGGAGCAGCGACAACTCATCCTCTGGACCAAACTGTGCA
GGGTTTGGCGAGAGCGGTCCGAGGCATTCGGGTGCAGCAGCAGCAGCAGC
AGCAGCCACAAGCGGCGACAGCTTTACAGGCAGGCGCGTTTCGTGTTTGT
CAAAGCAACCATAAATAAGCCTGCAGTTTTGTATGGTTCTTGCAAGGGAG
GGGAGGAGGTTCAGCAGACGGTTCTGATAAATCTCGGTCAGATGAGCGCT
CTTTTGGAGGAGGTGGGTTTCCTACAGGCAGTGGAGACGAGTGTACCCAT
CAAATTAGGGCAGCCAGAGTCAAACGTAGTGGCGTTGAAGGGAAAGTTTA
GGGAGGCAATGATGAACAAGGCATCCGCAGCATGGAACATACTGGTGACT
CAGGTTTTGCACATAACTATTCTGAACCAGCTAATTGCAGCAGGTAGCCC
GAGTGAGGGAAGGTCATTTTTTAAGAAGTGTAGCCTGTCCTTCATGTCGA
CCATCCCTCACTCAGGCTACCTGCTGCTTTTATTTGGTTCAGAATAGTTA
CGTACATACCCTGAGTCACCAGTATATTCCGTGCTGCGAATGCCTTATTT
ACCAACGCCTCCCCAAAACCTTGCCTTGAACGCCACCACGCTCCACTCTG
GCGGCCCTACGTTGGTGGGTATAAACTCGTCTTTACTCCTTCTAGGCAAC
CCGCCCCCCCCTAGAAGGCGTTCATCTGACCCTGAAATATCATAACCTTC
TGCTGCGCCTCCTCTGCTGGCTTGCAATGACTCACAAAAAACTGCAGGTA
TATCGTTGCTGCGACCAACACGGCGCCTACCTGTAAAGCTGCCGCCGCTT
GCTGCTGCCGCTGCTGCGCCTGAAAGCGTTGGGCCGCTCTCGCCAAACCC
TGCACACTTTTGTCAGAGGATGCGTTGTCGCCGCTCCTATATAGGCGCGC
GGGCTTGCGTTCTCTCCCCTTCCTTCCTCCCCCGTAGTGCAAGGGTTGCG
GTTGCTTCCTGCTGGGCTGCTGCTGACTGGTCGGTCCACTTGGCCCTGAA
AGCCCTTTTGCTGTCCCTTCTTGTCAGAACGCCGTGAAGGCGGTGAAGCG
TTTGGTGCCACCACCCCATGCCCGAGCTTCCATGACTGCCACGCTAGCGT
GTAGGGTCGCGTCGTACACATTTTTTTTTTTTCGCGCGGATGGCTCGGTC
GAGCGCGAGATTGCGATGAAGCGATGTAGAAGTCGTAAAGCAGGTGTCGA
TTTTCGAGTGGGACAGAGGGCCTGTCGCCCTCTCACCGGGGGACCCTTTA
AAGGAATAGAAATATTTCCTTCGAAGCATGTCTTAGGGTATTTTGTGCGA
AGAATTTTGGTTGGGATGGGTTTCTTGCAGTCTGTTTCCTGTATAATACC
AATCCTGACCCCCGAAACAACAAATGCTGTGGGAAAAAATGACCAAAGTT
TGACCCAAGAATTCTTGGGTCGGGTAACTGTGGGGCGGTTGGCAACCGGA
GCAACCTCTGCTTCGCCTGTTCAACGCGCAAACACCCTAATAATGAAACC
CATTCGGGAAAATATAAAACCCGCCGATCTCGGTTATAGAACAATCAATT
GCAGTTACACAAATCACACAAATCAGACTTCGGTACGAGAAAAACCAACA
CTCCTCTCCCCCCTCATCCCGCCCCCCTCCACCCTTCTCTCTTGTCTTCG
CATAGTCCCGTAGCCAATTAGGCGCGGTCGCGATGCTCGCGATTCAAATA
CGCGCGGTGTGCTCCGGGGTGGACGATTTCAGCTTGGAGCTAGAAGGAGA
AGGGGACGACGACGATGGAACGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig822:21202..24576+

>mRNA_M-pyrifera_M_contig822.19225.1 ID=mRNA_M-pyrifera_M_contig822.19225.1|Name=mRNA_M-pyrifera_M_contig822.19225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig822:21202..24576+ (Macrocystis pyrifera P11B4 male)
ATGAGAGTTGCATTGGCCACAGCAAGGGCATTGGGCTTCGCTTCTAGGAG
GGCGCGGCGAGGACGAAGATGAGAGTTGCATTGGCCACAGCAAGGGCATT
GGGCTTCGCTTCTAGGAGGGCGCGGCGAGGACGAAGGCCATGCTTTGCAG
AGCCTGGGGCACCCAATCCGCGAGGCCCTCAAGCAGGGCCACGAACAGCA
CCCGCACCAACGGGGCGTATGTCCGAGGAGTTTGTGATGGCCATGCTTTG
CAGAGCCTGGGGCACCCAATCCGCGAGGCCCTCAAGCAGGGCCACGAACA
GCACCCGCACCAACGGGGCGTATGTCCGAGGAGTTTGTGATGTCCCGTAG
CCAATTAGGCGCGGTCGCGATGCTCGCGATTCAAATACGCGCGGTGTGCT
CCGGGGTGGACGATTTCAGCTTGGAGCTAGAAGGAGAAGGGGACGACGAC
GATGGAACGTAGTCCCGTAGCCAATTAGGCGCGGTCGCGATGCTCGCGAT
TCAAATACGCGCGGTGTGCTCCGGGGTGGACGATTTCAGCTTGGAGCTAG
AAGGAGAAGGGGACGACGACGATGGAACGTAG
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