mRNA_M-pyrifera_M_contig82151.19217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82151.19217.1
Unique NamemRNA_M-pyrifera_M_contig82151.19217.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82151.19217.1 vs. uniprot
Match: A0A517W7A7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W7A7_9PLAN)

HSP 1 Score: 180 bits (457), Expect = 8.060e-56
Identity = 89/98 (90.82%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 MIEPQELQDWLLFCEDEHTVDPNHFATMFMELYLAPLTEKDKQDLALIFSHVSNSEHILEKMIRMDARAEDKTESDIIDLVHSDLKEMRQFINSQPVL 294
            MI+PQELQDWLLFCED HT DPNHF+TMFMELYLAPL+EKDKQDLALIFSHVSNSEHILEKMIRMDARAEDKTES+II+LV+SDLKEMRQ INSQPVL
Sbjct:    1 MIDPQELQDWLLFCEDNHTFDPNHFSTMFMELYLAPLSEKDKQDLALIFSHVSNSEHILEKMIRMDARAEDKTESEIIELVNSDLKEMRQLINSQPVL 98
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BLAST of mRNA_M-pyrifera_M_contig82151.19217.1 vs. uniprot
Match: A0A517PGG0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PGG0_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 1.500e-25
Identity = 48/97 (49.48%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    4 IEPQELQDWLLFCEDEHTVDPNHFATMFMELYLAPLTEKDKQDLALIFSHVSNSEHILEKMIRMDARAEDKTESDIIDLVHSDLKEMRQFINSQPVL 294
            ++ QE+ DW+ FCE + + + +HF++MFMELYL  LTEK+K DL  +FS++ N   IL+KM R+D RA+DKTE++I +LV  DLKE R+ I+S  ++
Sbjct:    1 MDSQEINDWMSFCEHKRSFELDHFSSMFMELYLESLTEKEKSDLETVFSYIPNKSRILDKMFRLDFRADDKTENEITNLVLQDLKEKRRIIDSPSLI 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82151.19217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517W7A7_9PLAN8.060e-5690.82Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517PGG0_9PLAN1.500e-2549.48Uncharacterized protein n=2 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82151contigM-pyrifera_M_contig82151:624..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.691073-CDS-M-pyrifera_M_contig82151:623..9171622816728.691073-CDS-M-pyrifera_M_contig82151:623..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82151 624..917 +
1692278144.1351721-CDS-M-pyrifera_M_contig82151:623..9171692278144.1351721-CDS-M-pyrifera_M_contig82151:623..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82151 624..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82151.19217.1prot_M-pyrifera_M_contig82151.19217.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82151 624..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82151.19217.1

>prot_M-pyrifera_M_contig82151.19217.1 ID=prot_M-pyrifera_M_contig82151.19217.1|Name=mRNA_M-pyrifera_M_contig82151.19217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MIEPQELQDWLLFCEDEHTVDPNHFATMFMELYLAPLTEKDKQDLALIFS
HVSNSEHILEKMIRMDARAEDKTESDIIDLVHSDLKEMRQFINSQPVL
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mRNA from alignment at M-pyrifera_M_contig82151:624..917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82151.19217.1 ID=mRNA_M-pyrifera_M_contig82151.19217.1|Name=mRNA_M-pyrifera_M_contig82151.19217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig82151:624..917+ (Macrocystis pyrifera P11B4 male)
ATGATCGAACCCCAGGAATTACAAGATTGGCTTCTCTTCTGTGAGGATGA
GCATACGGTTGATCCAAACCATTTCGCCACCATGTTCATGGAGCTCTATC
TGGCTCCGCTGACGGAAAAAGATAAGCAGGACCTGGCCCTTATTTTCAGC
CACGTTTCCAATTCGGAACACATACTTGAAAAAATGATTCGGATGGATGC
TCGTGCAGAAGATAAAACAGAGTCAGACATTATTGATCTTGTACACAGCG
ACCTCAAGGAGATGCGACAATTCATCAATTCACAACCTGTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82151:624..917+

>mRNA_M-pyrifera_M_contig82151.19217.1 ID=mRNA_M-pyrifera_M_contig82151.19217.1|Name=mRNA_M-pyrifera_M_contig82151.19217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig82151:624..917+ (Macrocystis pyrifera P11B4 male)
ATGATCGAACCCCAGGAATTACAAGATTGGCTTCTCTTCTGTGAGGATGA
GCATACGGTTGATCCAAACCATTTCGCCACCATGTTCATGGAGCTCTATC
TGGCTCCGCTGACGGAAAAAGATAAGCAGGACCTGGCCCTTATTTTCAGC
CACGTTTCCAATTCGGAACACATACTTGAAAAAATGATTCGGATGGATGC
TCGTGCAGAAGATAAAACAGAGTCAGACATTATTGATCTTGTACACAGCG
ACCTCAAGGAGATGCGACAATTCATCAATTCACAACCTGTCCTGATGATC
GAACCCCAGGAATTACAAGATTGGCTTCTCTTCTGTGAGGATGAGCATAC
GGTTGATCCAAACCATTTCGCCACCATGTTCATGGAGCTCTATCTGGCTC
CGCTGACGGAAAAAGATAAGCAGGACCTGGCCCTTATTTTCAGCCACGTT
TCCAATTCGGAACACATACTTGAAAAAATGATTCGGATGGATGCTCGTGC
AGAAGATAAAACAGAGTCAGACATTATTGATCTTGTACACAGCGACCTCA
AGGAGATGCGACAATTCATCAATTCACAACCTGTCCTG
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