mRNA_M-pyrifera_M_contig82140.19209.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82140.19209.1
Unique NamemRNA_M-pyrifera_M_contig82140.19209.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A351EX71_9ACTN (MFS domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EX71_9ACTN)

HSP 1 Score: 155 bits (392), Expect = 3.300e-43
Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = 1
Query:    4 VNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALYL 333
            V RS +VR GLP Y +AVIAFG+APNWPLGL ALL VG GFL VIATTNTAVQMIVAD MRGRVMS RVMGFTLAFP+GSLAQG LGD  GPQ TV+  GS+LL  A++L
Sbjct:  320 VTRSALVRWGLPTYAMAVIAFGLAPNWPLGLAALLIVGGGFLVVIATTNTAVQMIVADEMRGRVMSVRVMGFTLAFPVGSLAQGALGDWWGPQLTVVIFGSILLAVAVWL 429          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A6J4I2J0_9ACTN (MFS domain-containing protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4I2J0_9ACTN)

HSP 1 Score: 123 bits (308), Expect = 4.920e-31
Identity = 62/109 (56.88%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    7 NRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALYL 333
            +R  +VR  + LYG A+IAF +APN+ +GL+AL+ VG GFLAVI+ TNTAVQ+IVAD MRGRVM+ R+M FT A+P+G+L QG L D+IGP+ TV  +G++L + A++L
Sbjct:  307 SRGTLVRWAMLLYGAAIIAFALAPNYAIGLIALVVVGGGFLAVISATNTAVQVIVADHMRGRVMAFRIMAFTGAYPVGALLQGVLSDVIGPRITVAGAGAILTVAAVWL 415          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: UPI001E347AEC (MFS transporter n=1 Tax=Nocardioides sp. cx-169 TaxID=2899080 RepID=UPI001E347AEC)

HSP 1 Score: 116 bits (290), Expect = 2.010e-28
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 RVNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVL 312
            R+  S  VR  LPL+ V ++ F +APN  LG LAL+ VGA FLAV++T NTA+Q+IVAD +RGRV++ R+M FT +FPLG+LAQG+L D IGPQATV  S  VL
Sbjct:  291 RLTLSRTVRWALPLHAVGMLGFAVAPNLLLGALALMLVGASFLAVVSTANTAIQLIVADQVRGRVLAVRIMIFTASFPLGALAQGWLSDRIGPQATVAGSALVL 394          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A7Y2EZY9_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2EZY9_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 2.500e-26
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    4 VNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALY 330
            V  S VV+  LP+Y VA+IAFG++  +  GLLA + VG GFLA+IATTNTA Q +V + MRGRV++ RVMGFT A+P+G L QG+L D+  P A V  +G +LL+  L+
Sbjct:  278 VRPSAVVQASLPVYAVAIIAFGLSRTYVFGLLAAIVVGGGFLALIATTNTATQTLVDEHMRGRVLALRVMGFTGAYPIGGLLQGWLADVFSPPAVVTTAGVLLLLIWLW 386          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A7C1UC45_9ACTN (MFS transporter n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UC45_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 5.030e-26
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 VNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALYL 333
            + R  +V   L LYG AV AFG +  +P+G++ L F G GFLAV++ TNTAVQ+ V DS RGRVM+ R+MGFT AFP+G L QG + D+IGP+ TV  +G +L   A++L
Sbjct:  310 IPRGRLVAYSLVLYGAAVTAFGQSRIFPVGMITLAFAGMGFLAVVSATNTAVQLQVEDSKRGRVMALRIMGFTAAFPIGGLIQGAVADVIGPELTVTIAGVMLTAVAIWL 419          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: UPI001983CB02 (MFS transporter n=2 Tax=Nonomuraea cavernae TaxID=2045107 RepID=UPI001983CB02)

HSP 1 Score: 109 bits (273), Expect = 5.510e-26
Identity = 53/111 (47.75%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 RVNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALYL 333
            +V+   VVR GL +YG+ ++AFG+AP +  G++AL+ VG  FLAV++  NT++Q+IVAD MRGRVM+ R+M +T +FP+G L QGF+ D +GP+  V  +G+++L+ A+ L
Sbjct:  311 QVSLGQVVRWGLLIYGLGIVAFGVAPGYVFGVIALVVVGGCFLAVVSAVNTSMQVIVADHMRGRVMACRIMCYTASFPIGGLVQGFVSDRLGPRTAVCWAGALMLVAAVLL 421          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A1Q9SYC3_9PSEU (MFS domain-containing protein n=1 Tax=Pseudonocardia sp. CNS-139 TaxID=1904968 RepID=A0A1Q9SYC3_9PSEU)

HSP 1 Score: 106 bits (264), Expect = 9.620e-25
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    4 VNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLL 315
            V+R+ VVR  L  YGVA++ F  +P + +G++AL+ +G GFLAVI+T NTAVQ IVAD +RGRV++ R + FT A+P G+L QG+L D  GP+ TV  +G VLL
Sbjct:  304 VSRAAVVRWSLLCYGVALVVFATSPGYAVGVVALVVMGGGFLAVISTVNTAVQTIVADHLRGRVIALRTVAFTGAYPFGALVQGWLSDAFGPRVTVAGAGLVLL 407          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: UPI001E32B50B (MFS transporter n=1 Tax=Nocardioides sp. cx-173 TaxID=2898796 RepID=UPI001E32B50B)

HSP 1 Score: 105 bits (262), Expect = 1.930e-24
Identity = 56/105 (53.33%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 RVNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLL 315
            R+  S +VR  LPL  + ++ F  APN PL  L+L+ VGA FLAV+++ NTA+Q+IVAD +RGRV++ R+M FT +FPLG+L QG+L D +GPQ TV A G+V L
Sbjct:  291 RLTLSRMVRWALPLCALGMLGFAAAPNLPLAALSLMLVGASFLAVVSSANTAIQLIVADHVRGRVLAVRIMIFTGSFPLGALGQGWLSDRVGPQVTV-AGGAVAL 394          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A7Y6I940_9ACTN (MFS transporter n=4 Tax=Nonomuraea TaxID=83681 RepID=A0A7Y6I940_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 8.150e-23
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 RVNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALYL 333
            ++    VVR GL LYG+++IAFG AP +  G+ AL+ VG  FLAVI++ NT++Q+IVAD MRGRVM+ R+M +T + P+G L QG + D  GP+  V  +G+++ + A+ L
Sbjct:  335 KLRLGRVVRWGLVLYGLSMIAFGAAPGYAWGVAALIVVGGSFLAVISSVNTSIQVIVADGMRGRVMACRIMTYTASLPVGGLLQGVVADWAGPRWAVCGAGALMAVAAVTL 445          
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Match: A0A5Q2RQI3_9ACTN (MFS transporter n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RQI3_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 1.440e-22
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    7 NRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTNTAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIASGSVLLIFALYL 333
            +R+ +VRV LP+YG AV+A  +A               GFLAVI+TTNTAVQ+IVAD +RGRVM+ R+M FT A+PLG+L QG + D++G + T+  +G++L+   LYL
Sbjct:  323 DRATIVRVALPVYGAAVVAVAVAXXXXXXXXXXXXXXXGFLAVISTTNTAVQVIVADHVRGRVMAFRIMAFTGAYPLGALIQGAIADVVGTRPTIAGAGALLVAAGLYL 431          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82140.19209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351EX71_9ACTN3.300e-4375.45MFS domain-containing protein n=1 Tax=Acidimicrobi... [more]
A0A6J4I2J0_9ACTN4.920e-3156.88MFS domain-containing protein n=1 Tax=uncultured A... [more]
UPI001E347AEC2.010e-2858.65MFS transporter n=1 Tax=Nocardioides sp. cx-169 Ta... [more]
A0A7Y2EZY9_9ACTN2.500e-2653.21MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A7C1UC45_9ACTN5.030e-2651.82MFS transporter n=1 Tax=Acidimicrobiales bacterium... [more]
UPI001983CB025.510e-2647.75MFS transporter n=2 Tax=Nonomuraea cavernae TaxID=... [more]
A0A1Q9SYC3_9PSEU9.620e-2552.88MFS domain-containing protein n=1 Tax=Pseudonocard... [more]
UPI001E32B50B1.930e-2453.33MFS transporter n=1 Tax=Nocardioides sp. cx-173 Ta... [more]
A0A7Y6I940_9ACTN8.150e-2346.85MFS transporter n=4 Tax=Nonomuraea TaxID=83681 Rep... [more]
A0A5Q2RQI3_9ACTN1.440e-2248.62MFS transporter n=1 Tax=Actinomarinicola tropica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82140contigM-pyrifera_M_contig82140:5..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog1229780.BN381_80314
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Transmembrane secretion effector
EggNOG OGs2I2EY@201174,3UXSW@52018,COG0477@1,COG2814@2
COG Functional cat.EGP
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.3156283-CDS-M-pyrifera_M_contig82140:4..3431622816728.3156283-CDS-M-pyrifera_M_contig82140:4..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82140 5..343 +
1692278143.9638343-CDS-M-pyrifera_M_contig82140:4..3431692278143.9638343-CDS-M-pyrifera_M_contig82140:4..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82140 5..343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82140.19209.1prot_M-pyrifera_M_contig82140.19209.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82140 5..343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82140.19209.1

>prot_M-pyrifera_M_contig82140.19209.1 ID=prot_M-pyrifera_M_contig82140.19209.1|Name=mRNA_M-pyrifera_M_contig82140.19209.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
RVNRSDVVRVGLPLYGVAVIAFGMAPNWPLGLLALLFVGAGFLAVIATTN
TAVQMIVADSMRGRVMSARVMGFTLAFPLGSLAQGFLGDLIGPQATVIAS
GSVLLIFALYLAS
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mRNA from alignment at M-pyrifera_M_contig82140:5..343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82140.19209.1 ID=mRNA_M-pyrifera_M_contig82140.19209.1|Name=mRNA_M-pyrifera_M_contig82140.19209.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig82140:5..343+ (Macrocystis pyrifera P11B4 male)
CGGGTCAATCGCTCCGACGTCGTGCGGGTGGGGCTGCCGTTGTATGGCGT CGCCGTGATCGCGTTCGGCATGGCACCGAATTGGCCACTCGGACTCCTCG CCCTTCTGTTCGTCGGTGCCGGTTTCCTCGCCGTGATCGCCACCACCAAC ACCGCCGTCCAGATGATCGTCGCCGACTCGATGCGTGGCCGGGTGATGTC GGCCCGCGTCATGGGGTTCACACTCGCCTTCCCGCTCGGCTCACTGGCCC AGGGGTTCCTCGGCGACCTGATCGGCCCCCAGGCGACGGTGATCGCCTCG GGTTCGGTCCTGCTGATCTTCGCTCTGTACCTCGCTTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82140:5..343+

>mRNA_M-pyrifera_M_contig82140.19209.1 ID=mRNA_M-pyrifera_M_contig82140.19209.1|Name=mRNA_M-pyrifera_M_contig82140.19209.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig82140:5..343+ (Macrocystis pyrifera P11B4 male)
CGGGTCAATCGCTCCGACGTCGTGCGGGTGGGGCTGCCGTTGTATGGCGT
CGCCGTGATCGCGTTCGGCATGGCACCGAATTGGCCACTCGGACTCCTCG
CCCTTCTGTTCGTCGGTGCCGGTTTCCTCGCCGTGATCGCCACCACCAAC
ACCGCCGTCCAGATGATCGTCGCCGACTCGATGCGTGGCCGGGTGATGTC
GGCCCGCGTCATGGGGTTCACACTCGCCTTCCCGCTCGGCTCACTGGCCC
AGGGGTTCCTCGGCGACCTGATCGGCCCCCAGGCGACGGTGATCGCCTCG
GGTTCGGTCCTGCTGATCTTCGCTCTGTACCTCGCTTCGCGGGTCAATCG
CTCCGACGTCGTGCGGGTGGGGCTGCCGTTGTATGGCGTCGCCGTGATCG
CGTTCGGCATGGCACCGAATTGGCCACTCGGACTCCTCGCCCTTCTGTTC
GTCGGTGCCGGTTTCCTCGCCGTGATCGCCACCACCAACACCGCCGTCCA
GATGATCGTCGCCGACTCGATGCGTGGCCGGGTGATGTCGGCCCGCGTCA
TGGGGTTCACACTCGCCTTCCCGCTCGGCTCACTGGCCCAGGGGTTCCTC
GGCGACCTGATCGGCCCCCAGGCGACGGTGATCGCCTCGGGTTCGGTCCT
GCTGATCTTCGCTCTGTACCTCGCTTCG
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