mRNA_M-pyrifera_M_contig8200.19187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8200.19187.1
Unique NamemRNA_M-pyrifera_M_contig8200.19187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 5.920e-70
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGDKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKKSAKAPKKAGDKK++NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.430e-63
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGDKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKKSAKAPKKAGDK K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.760e-62
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGD-KKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAK PSKK+AKAPKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.570e-60
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGD-KKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAK PSKK+AKAPKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.620e-60
Identity = 101/118 (85.59%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGDKKKSNK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKKSAKAPKK G+K K+ K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 189 bits (481), Expect = 3.170e-60
Identity = 99/115 (86.09%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGDKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 372
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 189 bits (480), Expect = 4.800e-60
Identity = 100/116 (86.21%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGDKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSK+SAKAPKKA    KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.670e-58
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:   28 MAKTPSKKSAKAPKKAGDKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 372
            MAKTPSKK+A APKKAG K+ S KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 181 bits (459), Expect = 8.650e-57
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:   28 MAKTPSKKS-AKAPKKA--GDKKK-SNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 372
            MAKTPSK++ AKA KKA  GDKKK S KR ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.930e-56
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:   34 KTPSKKSAKAPKKAGD-KKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            KTPSK+SAKAPKKA     KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8200.19187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI5.920e-7098.28Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA2.430e-6388.79Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA3.760e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA2.570e-6089.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA2.620e-6085.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU3.170e-6086.09Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC4.800e-6086.21Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA2.670e-5886.96Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS8.650e-5784.87Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7R9ZTA9_9STRA1.930e-5685.22Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8200contigM-pyrifera_M_contig8200:10375..10761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.2e-53
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size387
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.3093877-CDS-M-pyrifera_M_contig8200:10374..107341622816727.3093877-CDS-M-pyrifera_M_contig8200:10374..10734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8200 10375..10734 -
1692278143.4047127-CDS-M-pyrifera_M_contig8200:10374..107341692278143.4047127-CDS-M-pyrifera_M_contig8200:10374..10734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8200 10375..10734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.322822-UTR-M-pyrifera_M_contig8200:10734..107611622816727.322822-UTR-M-pyrifera_M_contig8200:10734..10761Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8200 10735..10761 -
1692278143.4161596-UTR-M-pyrifera_M_contig8200:10734..107611692278143.4161596-UTR-M-pyrifera_M_contig8200:10734..10761Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8200 10735..10761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8200.19187.1prot_M-pyrifera_M_contig8200.19187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8200 10375..10734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8200.19187.1

>prot_M-pyrifera_M_contig8200.19187.1 ID=prot_M-pyrifera_M_contig8200.19187.1|Name=mRNA_M-pyrifera_M_contig8200.19187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MAKTPSKKSAKAPKKAGDKKKSNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSSYSA*
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mRNA from alignment at M-pyrifera_M_contig8200:10375..10761-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8200.19187.1 ID=mRNA_M-pyrifera_M_contig8200.19187.1|Name=mRNA_M-pyrifera_M_contig8200.19187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig8200:10375..10761- (Macrocystis pyrifera P11B4 male)
TTCTTTGTCAACCTCCTACCAACCAAAATGGCCAAGACCCCCTCCAAGAA
GTCCGCCAAGGCCCCCAAGAAGGCCGGAGACAAGAAGAAGAGCAACAAGA
GGACCGAGTCTTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTACAC
CCCGACACGGGTATCTCCAAGCGCGGAATGTCCATCATGAACTCGTTCAT
CAACGACGTGTTCGAGCGCGTGGCCGGCGAGTCCGGAAAGCTGACCCGGT
ACAACAAGAAGGCGACTCTCTCCTCGCGCGAGGTGCAGACGGCGGTGCGC
CTCATGCTTCCCGGAGAGCTTGCCAAGCACGCCGTGTCTGAGGGCACCAA
GGCCGTGACCAAGTTCACCTCTTCTTACTCCGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8200:10375..10761-

>mRNA_M-pyrifera_M_contig8200.19187.1 ID=mRNA_M-pyrifera_M_contig8200.19187.1|Name=mRNA_M-pyrifera_M_contig8200.19187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig8200:10375..10761- (Macrocystis pyrifera P11B4 male)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCGG
AGACAAGAAGAAGAGCAACAAGAGGACCGAGTCTTACTCCTCGTACATCT
ACAAGGTGCTCAAGCAGGTACACCCCGACACGGGTATCTCCAAGCGCGGA
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGAAAGCTGACCCGGTACAACAAGAAGGCGACTCTCTCCTCGC
GCGAGGTGCAGACGGCGGTGCGCCTCATGCTTCCCGGAGAGCTTGCCAAG
CACGCCGTGTCTGAGGGCACCAAGGCCGTGACCAAGTTCACCTCTTCTTA
CTCCGCCTAAATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCA
AGAAGGCCGGAGACAAGAAGAAGAGCAACAAGAGGACCGAGTCTTACTCC
TCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACGGGTATCTC
CAAGCGCGGAATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGC
GCGTGGCCGGCGAGTCCGGAAAGCTGACCCGGTACAACAAGAAGGCGACT
CTCTCCTCGCGCGAGGTGCAGACGGCGGTGCGCCTCATGCTTCCCGGAGA
GCTTGCCAAGCACGCCGTGTCTGAGGGCACCAAGGCCGTGACCAAGTTCA
CCTCTTCTTACTCCGCCTAA
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