mRNA_M-pyrifera_M_contig81992.19185.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81992.19185.1
Unique NamemRNA_M-pyrifera_M_contig81992.19185.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A8C8Z5R6_PROSS (Solute carrier family 35 member G1 n=2 Tax=Lemuridae TaxID=9445 RepID=A0A8C8Z5R6_PROSS)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 LEAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTPWTSILGSIFIIIGTVAIVFRRYHDHQK 249
            L+ +  I +GGLG   Q+ L +G+ ++KAGP A MR +DVV +  FQ  IF +   W ++ G+I ++  ++     R++D  K
Sbjct:  283 LDRLYLILIGGLGLSAQVFLTKGLQIEKAGPVAVMRTMDVVFAFIFQIIIFKDVPSWWTVGGAICLVASSIGAAIHRWYDSSK 365          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A2K6GY46_PROCO (Solute carrier family 35 member G1 n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6GY46_PROCO)

HSP 1 Score: 64.7 bits (156), Expect = 2.470e-10
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 LEAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTPWTSILGSIFIIIGTVAIVFRRYHDHQK 249
            L+ +  I +GG G GGQ+ L +G+ ++KAGP A MR +DVV +  FQ  IF +   W ++ G+I ++  +      R++   K
Sbjct:  282 LDRLYLILIGGFGLGGQVFLTKGLQIEKAGPVAIMRTMDVVFAFTFQIIIFNDVPSWWTVGGAICLVASSTGAAIHRWYQSSK 364          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A0L0SKH9_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SKH9_ALLM3)

HSP 1 Score: 63.9 bits (154), Expect = 4.960e-10
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 LEAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTPWTSILGSIFIIIGTVAIVFRRYHDHQK 249
            LEA + +A+G   FGGQ+LLN+G+ L +AGP   MRN+DVV +  F   +F E    TSILG+I I+  TV     +   H++
Sbjct:  315 LEATVLLAIGVTAFGGQVLLNKGLQLARAGPGVLMRNLDVVFAFIFGITLFDERPFVTSILGAILIVGTTVLTGIGKLIAHRR 397          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: L9KV82_TUPCH (Transmembrane protein 20 n=2 Tax=Tupaia chinensis TaxID=246437 RepID=L9KV82_TUPCH)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-9
Identity = 25/83 (30.12%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 LEAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTPWTSILGSIFIIIGTVAIVFRRYHDHQK 249
            L+ +  I +G  G GGQ+ L + + ++K GP A MR +DVV +  FQ F+F     W ++ G++ ++  ++ +  R+++   K
Sbjct:  130 LDRLFLILIGLFGLGGQIFLTKALQIEKVGPVAIMRTMDVVFAFIFQIFVFNHVPTWWTVSGALCVVASSIGVAVRKWYQGSK 212          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A1Y2HQ37_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HQ37_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 5.860e-9
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    4 EAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTPWTSILGSIFIIIGT 210
            E  L   VG   FGGQ+LLNRG+ L +AGP   MRN+DVV +  F   +F E   WTS++G+  +I+GT
Sbjct:  256 EWCLLALVGLCAFGGQILLNRGLQLARAGPGVLMRNLDVVFAYVFGVCVFHEQVFWTSLVGA-GLIVGT 323          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A3Q0S2X9_AMPCI (Solute carrier family 35 member G1 n=2 Tax=Heroini TaxID=318529 RepID=A0A3Q0S2X9_AMPCI)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-8
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   10 ILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTP-WTSILGSIFIIIGTVAIVFRRYHDHQK 249
            ++ IAV  LG  GQ  L + + ++KAGP A MR +DVV++  FQ FIFF   P W S+ G++ I++ T  +  RR++ + +
Sbjct:  327 LMLIAV--LGIAGQTFLTKALQIEKAGPVALMRTVDVVLAFIFQ-FIFFNRAPTWWSLGGALCIVVSTSGVAVRRWYSNSR 404          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A0L0SHH4_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SHH4_ALLM3)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-8
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 LEAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTPWTSILGSIFIIIGTVA 216
            LEA + + +G   FGGQ+LLN+G+ L +AGP   MRN+DVV +  F   +F E    TSILG+I I+  T A
Sbjct:  316 LEATVLLTIGITAFGGQVLLNKGLQLARAGPGVLMRNLDVVFAFIFGITLFDERPFVTSILGAILIVRTTGA 387          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: Q4RG57_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RG57_TETNG)

HSP 1 Score: 59.7 bits (143), Expect = 1.310e-8
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   10 ILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTP-WTSILGSIFIIIGTVAIVFRRYHDHQ 246
            ++ IAV  LG  GQ  L + + ++KAGP A MR +DVV++  FQ FIFF   P W S+ G++ I+  T  I  R++++H 
Sbjct:  229 LVLIAV--LGIAGQTFLTKALQIEKAGPVALMRTVDVVLAFIFQ-FIFFSRAPTWWSLGGALCIVASTSGIALRKWYNHS 305          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: A0A3B5KJH8_TAKRU (Uncharacterized protein n=3 Tax=Takifugu TaxID=31032 RepID=A0A3B5KJH8_TAKRU)

HSP 1 Score: 59.7 bits (143), Expect = 1.540e-8
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   10 ILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTP-WTSILGSIFIIIGTVAIVFRRYHDHQ 246
            ++ IAV  LG  GQ  L + + ++KAGP A MR +DVV++  FQ FIFF   P W S+ G++ I+  T  I  R++++H 
Sbjct:  331 LVLIAV--LGIAGQTFLTKALQIEKAGPVALMRTVDVVLAFIFQ-FIFFSRAPTWWSLGGALCIVASTSGIALRKWYNHS 407          
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Match: UPI001BE66EA5 (solute carrier family 35 member G1 n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BE66EA5)

HSP 1 Score: 59.7 bits (143), Expect = 1.540e-8
Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 ILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFIFFEYTP-WTSILGSIFIIIGTVAIVFRRYHDHQK 249
            ++ IA+  LG GGQ+ L + + ++KAGP A MR +DV+++  FQ FIFF   P W S+ G++ ++  T  +  R++H + +
Sbjct:  333 LMLIAI--LGIGGQIFLTKALQIEKAGPVALMRTLDVLLAFIFQ-FIFFNRAPTWWSLGGALCVVASTSGVALRKWHSNCR 410          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81992.19185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C8Z5R6_PROSS1.320e-1034.94Solute carrier family 35 member G1 n=2 Tax=Lemurid... [more]
A0A2K6GY46_PROCO2.470e-1034.94Solute carrier family 35 member G1 n=1 Tax=Propith... [more]
A0A0L0SKH9_ALLM34.960e-1043.37Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
L9KV82_TUPCH1.250e-930.12Transmembrane protein 20 n=2 Tax=Tupaia chinensis ... [more]
A0A1Y2HQ37_9FUNG5.860e-947.83Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A3Q0S2X9_AMPCI1.120e-839.51Solute carrier family 35 member G1 n=2 Tax=Heroini... [more]
A0A0L0SHH4_ALLM31.120e-847.22Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
Q4RG57_TETNG1.310e-841.25(spotted green pufferfish) hypothetical protein (F... [more]
A0A3B5KJH8_TAKRU1.540e-841.25Uncharacterized protein n=3 Tax=Takifugu TaxID=310... [more]
UPI001BE66EA51.540e-837.04solute carrier family 35 member G1 n=1 Tax=Chelmon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81992contigM-pyrifera_M_contig81992:667..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog28583.AMAG_08083T0
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
EggNOG free text desc.DUF6-domain-containing protein
EggNOG OGs395GA@33154,3NUM2@4751,COG0697@1,KOG4510@2759
COG Functional cat.EG
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.2364833-CDS-M-pyrifera_M_contig81992:666..9151622816727.2364833-CDS-M-pyrifera_M_contig81992:666..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81992 667..915 -
1692278143.3779876-CDS-M-pyrifera_M_contig81992:666..9151692278143.3779876-CDS-M-pyrifera_M_contig81992:666..915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81992 667..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81992.19185.1prot_M-pyrifera_M_contig81992.19185.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81992 667..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81992.19185.1

>prot_M-pyrifera_M_contig81992.19185.1 ID=prot_M-pyrifera_M_contig81992.19185.1|Name=mRNA_M-pyrifera_M_contig81992.19185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
LEAILCIAVGGLGFGGQMLLNRGMSLDKAGPSAAMRNIDVVMSVCFQAFI
FFEYTPWTSILGSIFIIIGTVAIVFRRYHDHQK
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mRNA from alignment at M-pyrifera_M_contig81992:667..915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81992.19185.1 ID=mRNA_M-pyrifera_M_contig81992.19185.1|Name=mRNA_M-pyrifera_M_contig81992.19185.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig81992:667..915- (Macrocystis pyrifera P11B4 male)
CTTGAAGCAATCTTGTGCATTGCTGTTGGTGGTCTTGGGTTTGGAGGTCA AATGCTTCTCAATCGCGGTATGAGTCTAGACAAAGCAGGACCATCTGCTG CCATGCGCAACATTGATGTAGTGATGTCAGTTTGCTTTCAGGCATTTATC TTCTTTGAATACACCCCATGGACATCCATTCTTGGCTCTATTTTCATCAT CATTGGAACTGTTGCCATTGTCTTTCGACGTTACCACGATCATCAAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81992:667..915-

>mRNA_M-pyrifera_M_contig81992.19185.1 ID=mRNA_M-pyrifera_M_contig81992.19185.1|Name=mRNA_M-pyrifera_M_contig81992.19185.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig81992:667..915- (Macrocystis pyrifera P11B4 male)
CTTGAAGCAATCTTGTGCATTGCTGTTGGTGGTCTTGGGTTTGGAGGTCA
AATGCTTCTCAATCGCGGTATGAGTCTAGACAAAGCAGGACCATCTGCTG
CCATGCGCAACATTGATGTAGTGATGTCAGTTTGCTTTCAGGCATTTATC
TTCTTTGAATACACCCCATGGACATCCATTCTTGGCTCTATTTTCATCAT
CATTGGAACTGTTGCCATTGTCTTTCGACGTTACCACGATCATCAAAAGC
TTGAAGCAATCTTGTGCATTGCTGTTGGTGGTCTTGGGTTTGGAGGTCAA
ATGCTTCTCAATCGCGGTATGAGTCTAGACAAAGCAGGACCATCTGCTGC
CATGCGCAACATTGATGTAGTGATGTCAGTTTGCTTTCAGGCATTTATCT
TCTTTGAATACACCCCATGGACATCCATTCTTGGCTCTATTTTCATCATC
ATTGGAACTGTTGCCATTGTCTTTCGACGTTACCACGATCATCAAAAG
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