prot_M-pyrifera_M_contig81982.19179.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig81982.19179.1
Unique Nameprot_M-pyrifera_M_contig81982.19179.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length99
Homology
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BLAST of mRNA_M-pyrifera_M_contig81982.19179.1 vs. uniprot
Match: A0A4V1IUL3_9FUNG (RING-type domain-containing protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IUL3_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 3.640e-8
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0 
Query:    4 CAICLHTPERPTFTQPCFHGPFCFKHIDRWIGVSRSCPMCKR 45
            CAICL +PE PTF  PC+H  FC+  IDRW  V+  CP+CK+
Sbjct:   97 CAICLASPEDPTFLSPCYHA-FCWACIDRWSRVAAVCPLCKQ 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81982.19179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4V1IUL3_9FUNG3.640e-857.14RING-type domain-containing protein n=1 Tax=Cauloc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..65
e-value: 6.5E-12
score: 46.6
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 2..49
e-value: 1.1E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR46077FAMILY NOT NAMEDcoord: 4..60
NoneNo IPR availablePANTHERPTHR46077:SF1TOP1 BINDING ARGININE/SERINE RICH PROTEINcoord: 4..60
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..52
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 4..44
score: 9.657

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81982contigM-pyrifera_M_contig81982:102..398 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81982.19179.1mRNA_M-pyrifera_M_contig81982.19179.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig81982 102..398 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig81982.19179.1 ID=prot_M-pyrifera_M_contig81982.19179.1|Name=mRNA_M-pyrifera_M_contig81982.19179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ETVCAICLHTPERPTFTQPCFHGPFCFKHIDRWIGVSRSCPMCKREIHAV
LFDQTSQYDYTQAAVITMPKGEEGGEVEAGFVSTKHFRVTCLFPGRRRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING