prot_M-pyrifera_M_contig81980.19178.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig81980.19178.1
Unique Nameprot_M-pyrifera_M_contig81980.19178.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length64
Homology
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BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A0G4I0L0_9ALVE (RING-CH-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I0L0_9ALVE)

HSP 1 Score: 55.8 bits (133), Expect = 1.670e-7
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 0 
Query:    5 CRICDGGEEEGELLHPCNCRAS---IHAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 62
            CRIC  G+E GEL+HPC C  S   +H  CL++W S+         + D +  CEVC  +Y
Sbjct:  152 CRICQDGQEGGELIHPCKCMGSMKYVHRECLDQWRSVTTL------NPDNMVRCEVCHHKY 206
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BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A7J7BMG9_9COLE (RING-CH-type domain-containing protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BMG9_9COLE)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-6
Identity = 27/61 (44.26%), Postives = 32/61 (52.46%), Query Frame = 0 
Query:    5 CRICDGGEEEGELLHPCNCRASI---HAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 62
            CRIC GGE  G+LL PC CR SI   H  CLE+W+      E    H      CE+C+  Y
Sbjct:  405 CRICHGGESNGDLLSPCQCRGSIALTHMECLERWLK-----ESATSH------CELCRYHY 454
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BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A7S1RX41_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RX41_ALECA)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-6
Identity = 25/65 (38.46%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:    1 MATHCRICDGGEEEGELLHPCNCRAS---IHAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 62
            +   CRIC GG+++GEL+ PC C  S   +H  C  +WI       RDG       VC VC++ Y
Sbjct:   41 VVEECRICGGGDKDGELIRPCGCAGSMAFVHRHCAAEWI------RRDGSP-----VCPVCRKAY 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A7S4QG80_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QG80_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 2.090e-6
Identity = 25/65 (38.46%), Postives = 33/65 (50.77%), Query Frame = 0 
Query:    1 MATHCRICDGGEEEGELLHPCNCRAS---IHAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 62
            +   CRIC GGE +GEL+ PC C  S   +H  C  +WI       RDG  I     C +C++ Y
Sbjct:  370 VVAECRICGGGEADGELIRPCGCAGSMAFVHRQCAAEWI------RRDGSPI-----CPICRKPY 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0G4I0L0_9ALVE1.670e-740.98RING-CH-type domain-containing protein n=1 Tax=Chr... [more]
A0A7J7BMG9_9COLE1.110e-644.26RING-CH-type domain-containing protein n=1 Tax=Abs... [more]
A0A7S1RX41_ALECA1.750e-638.46Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4QG80_9DINO2.090e-638.46Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 4..59
e-value: 1.0E-5
score: 32.9
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 5..58
e-value: 3.1E-10
score: 40.0
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 1..64
score: 15.978
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..64
e-value: 1.7E-11
score: 45.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81980contigM-pyrifera_M_contig81980:337..528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81980.19178.1mRNA_M-pyrifera_M_contig81980.19178.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig81980 337..528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig81980.19178.1 ID=prot_M-pyrifera_M_contig81980.19178.1|Name=mRNA_M-pyrifera_M_contig81980.19178.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MATHCRICDGGEEEGELLHPCNCRASIHAACLEKWISIRPFPERDGGHID
PLYVCEVCQEEYRV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD