mRNA_M-pyrifera_M_contig81931.19173.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81931.19173.1
Unique NamemRNA_M-pyrifera_M_contig81931.19173.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81931.19173.1 vs. uniprot
Match: A0A5A8EDA0_CAFRO (Senescence domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDA0_CAFRO)

HSP 1 Score: 95.5 bits (236), Expect = 4.800e-19
Identity = 64/200 (32.00%), Postives = 104/200 (52.00%), Query Frame = 1 
Query:   52 IVVVGRWVGEGLRMGAVLVGRGVGYLSGGLRGYLRGVGEGE----EVVVSEELRGNLARVRVLSGAAVTITQSMTVAVTEMARGLGRALVQTVGESEMGRKVGG-MVEGEKGKAVMKVALSSAAAFGEVWEAMDDAAKTIGTAMGEGVVEVVTHRYGEEAGEVAKDGVEVGARLGKSALNLKNVGTAGVVVRATAAEARR 636
            +V  G+W   GL +GA + G GV      +    R   E E    +  VS+    N+ R R+ S AAV +T+ + V +TE+ +G+GRA+   VGES+ G+  G  +      + + +V L+   A  ++W+A+++   T+G  +GE   E V  RYG  A    ++G+ V    G++ LNL+ V   G+ V A+   ARR
Sbjct:  309 VVGAGQWAATGLVLGARMAGSGVRRAGTAIASRSRNGREAEPEREDAEVSKSTLRNIRRARMASSAAVLVTRGLVVTMTELTKGMGRAVGALVGESDAGKAAGKRLAASTTAQGLKRVGLAGLVAVSDLWDALEEGLMTVGGDIGEATEEAVGARYGAAAASATREGMMVAGDAGQTLLNLRRVAPVGLAVNASKTAARR 508
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BLAST of mRNA_M-pyrifera_M_contig81931.19173.1 vs. uniprot
Match: A0A433U352_ELYCH (Senescence domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433U352_ELYCH)

HSP 1 Score: 54.7 bits (130), Expect = 4.400e-5
Identity = 58/217 (26.73%), Postives = 99/217 (45.62%), Query Frame = 1 
Query:   25 ESAEVLATGIVVVGRWVGEGLRMGAVLVGRGVGYLSGGLRGYLRGVGEGEEV-VVSEELRGNLARVRVLSGAAVTITQSMTVAVTEMARGLGRALVQTV---GESEMGRKVGGMVEGEKGKA----VMKVALSSAAAFGEVWEAMDDAAKTIGTAMGEGVVEVVTHRYGEEAGEVAKDGVEVGARLGKSALNLKNVGTAGVVVRATAAEARRKLTDM 651
            ++A  ++ GI+V   W+  G+  GA   G     L  G     RG    EE   V   ++  +   RV +  AV +T  +   + E    L + +   V   GE  +   +    E   GK+    V+KVA S    FG V+  ++ AAK +G ++ +  V+VVTH+YGE+AG + ++ +     +  +A N+ N+G   +  R      +  L D+
Sbjct:  359 DTASKISKGILVAADWITWGVGKGAEKAGE---LLKAGSEKLRRGSQPTEEPRKVDPRVQQGVKYARVATKGAVKVTGYIVNKLGEATVVLAKQMAPHVRRHGEKVIPNSL--KKENSSGKSTLDGVVKVAASGLQGFGTVFMGLEHAAKALGKSLTQETVQVVTHKYGEQAGMLTENTMYTAGNVAVAAYNVDNMGMKAIAKRTAKETGKAVLHDL 570
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BLAST of mRNA_M-pyrifera_M_contig81931.19173.1 vs. uniprot
Match: UPI0018D688D7 (spartin-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D688D7)

HSP 1 Score: 53.9 bits (128), Expect = 7.660e-5
Identity = 30/102 (29.41%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:  379 VMKVALSSAAAFGEVWEAMDDAAKTIGTAMGEGVVEVVTHRYGEEAGEVAKDGVEVGARLGKSALNLKNVGTAGVVVRATAAEARRKLTDMGEDRLVKHLSD 684
            V++VA SS   FG V+  ++ AAK++  ++    VEVV H+YG +A       ++    +G SA N+ ++G   +  RA     +  L D  ++ + K+  D
Sbjct:  422 VVEVAASSLRGFGTVYSGLETAAKSLAKSISNATVEVVQHKYGNDAARFTDTTLDAATNIGVSAYNMNHIGVKAIAKRAAKDTGKAVLEDYNKESVSKNGKD 523
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81931.19173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8EDA0_CAFRO4.800e-1932.00Senescence domain-containing protein n=4 Tax=Cafet... [more]
A0A433U352_ELYCH4.400e-526.73Senescence domain-containing protein n=1 Tax=Elysi... [more]
UPI0018D688D77.660e-529.41spartin-like n=1 Tax=Patiria miniata TaxID=46514 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81931contigM-pyrifera_M_contig81931:224..913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue6.9e-10
Seed eggNOG ortholog529818.AMSG_07054T0
KEGG koko:K19366
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of collateral sprouting in absence of injury
EggNOG OGsKOG2709@1,KOG2709@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size690
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.7696319-CDS-M-pyrifera_M_contig81931:223..9131622816726.7696319-CDS-M-pyrifera_M_contig81931:223..913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81931 224..913 +
1692278143.1746867-CDS-M-pyrifera_M_contig81931:223..9131692278143.1746867-CDS-M-pyrifera_M_contig81931:223..913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81931 224..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81931.19173.1prot_M-pyrifera_M_contig81931.19173.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81931 224..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81931.19173.1

>prot_M-pyrifera_M_contig81931.19173.1 ID=prot_M-pyrifera_M_contig81931.19173.1|Name=mRNA_M-pyrifera_M_contig81931.19173.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=230bp
SSSLPSGAESAEVLATGIVVVGRWVGEGLRMGAVLVGRGVGYLSGGLRGY
LRGVGEGEEVVVSEELRGNLARVRVLSGAAVTITQSMTVAVTEMARGLGR
ALVQTVGESEMGRKVGGMVEGEKGKAVMKVALSSAAAFGEVWEAMDDAAK
TIGTAMGEGVVEVVTHRYGEEAGEVAKDGVEVGARLGKSALNLKNVGTAG
VVVRATAAEARRKLTDMGEDRLVKHLSDKT
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mRNA from alignment at M-pyrifera_M_contig81931:224..913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81931.19173.1 ID=mRNA_M-pyrifera_M_contig81931.19173.1|Name=mRNA_M-pyrifera_M_contig81931.19173.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig81931:224..913+ (Macrocystis pyrifera P11B4 male)
TCCTCTTCTCTTCCTTCGGGTGCAGAGTCAGCTGAGGTGCTGGCGACTGG
GATTGTGGTGGTGGGACGGTGGGTGGGGGAGGGGTTACGGATGGGGGCGG
TGTTGGTGGGGAGAGGGGTGGGGTACTTGAGTGGGGGATTGCGGGGGTAT
TTGCGGGGTGTAGGGGAAGGGGAGGAGGTGGTGGTGAGTGAGGAGTTGAG
GGGCAATTTGGCTCGTGTTCGAGTGTTGAGTGGGGCGGCAGTGACGATCA
CCCAATCCATGACTGTAGCAGTGACTGAAATGGCGAGAGGTTTGGGAAGA
GCGTTGGTGCAAACAGTGGGGGAGAGTGAGATGGGGAGGAAAGTGGGGGG
CATGGTGGAAGGAGAAAAAGGGAAAGCAGTGATGAAAGTAGCACTGTCAT
CAGCTGCAGCATTTGGAGAAGTGTGGGAAGCTATGGATGACGCAGCCAAA
ACGATAGGCACGGCAATGGGAGAAGGGGTTGTGGAAGTGGTGACACACAG
GTATGGAGAAGAAGCAGGGGAAGTAGCAAAAGATGGAGTGGAGGTGGGGG
CGAGGTTGGGGAAAAGTGCTCTCAACCTTAAAAATGTAGGCACGGCGGGA
GTGGTGGTCAGAGCAACAGCAGCAGAAGCAAGGAGGAAACTTACTGACAT
GGGAGAAGATAGGTTGGTGAAACACCTCAGTGACAAGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81931:224..913+

>mRNA_M-pyrifera_M_contig81931.19173.1 ID=mRNA_M-pyrifera_M_contig81931.19173.1|Name=mRNA_M-pyrifera_M_contig81931.19173.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1380bp|location=Sequence derived from alignment at M-pyrifera_M_contig81931:224..913+ (Macrocystis pyrifera P11B4 male)
TCCTCTTCTCTTCCTTCGGGTGCAGAGTCAGCTGAGGTGCTGGCGACTGG
GATTGTGGTGGTGGGACGGTGGGTGGGGGAGGGGTTACGGATGGGGGCGG
TGTTGGTGGGGAGAGGGGTGGGGTACTTGAGTGGGGGATTGCGGGGGTAT
TTGCGGGGTGTAGGGGAAGGGGAGGAGGTGGTGGTGAGTGAGGAGTTGAG
GGGCAATTTGGCTCGTGTTCGAGTGTTGAGTGGGGCGGCAGTGACGATCA
CCCAATCCATGACTGTAGCAGTGACTGAAATGGCGAGAGGTTTGGGAAGA
GCGTTGGTGCAAACAGTGGGGGAGAGTGAGATGGGGAGGAAAGTGGGGGG
CATGGTGGAAGGAGAAAAAGGGAAAGCAGTGATGAAAGTAGCACTGTCAT
CAGCTGCAGCATTTGGAGAAGTGTGGGAAGCTATGGATGACGCAGCCAAA
ACGATAGGCACGGCAATGGGAGAAGGGGTTGTGGAAGTGGTGACACACAG
GTATGGAGAAGAAGCAGGGGAAGTAGCAAAAGATGGAGTGGAGGTGGGGG
CGAGGTTGGGGAAAAGTGCTCTCAACCTTAAAAATGTAGGCACGGCGGGA
GTGGTGGTCAGAGCAACAGCAGCAGAAGCAAGGAGGAAACTTACTGACAT
GGGAGAAGATAGGTTGGTGAAACACCTCAGTGACAAGACATCCTCTTCTC
TTCCTTCGGGTGCAGAGTCAGCTGAGGTGCTGGCGACTGGGATTGTGGTG
GTGGGACGGTGGGTGGGGGAGGGGTTACGGATGGGGGCGGTGTTGGTGGG
GAGAGGGGTGGGGTACTTGAGTGGGGGATTGCGGGGGTATTTGCGGGGTG
TAGGGGAAGGGGAGGAGGTGGTGGTGAGTGAGGAGTTGAGGGGCAATTTG
GCTCGTGTTCGAGTGTTGAGTGGGGCGGCAGTGACGATCACCCAATCCAT
GACTGTAGCAGTGACTGAAATGGCGAGAGGTTTGGGAAGAGCGTTGGTGC
AAACAGTGGGGGAGAGTGAGATGGGGAGGAAAGTGGGGGGCATGGTGGAA
GGAGAAAAAGGGAAAGCAGTGATGAAAGTAGCACTGTCATCAGCTGCAGC
ATTTGGAGAAGTGTGGGAAGCTATGGATGACGCAGCCAAAACGATAGGCA
CGGCAATGGGAGAAGGGGTTGTGGAAGTGGTGACACACAGGTATGGAGAA
GAAGCAGGGGAAGTAGCAAAAGATGGAGTGGAGGTGGGGGCGAGGTTGGG
GAAAAGTGCTCTCAACCTTAAAAATGTAGGCACGGCGGGAGTGGTGGTCA
GAGCAACAGCAGCAGAAGCAAGGAGGAAACTTACTGACATGGGAGAAGAT
AGGTTGGTGAAACACCTCAGTGACAAGACA
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