mRNA_M-pyrifera_M_contig81917.19164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81917.19164.1
Unique NamemRNA_M-pyrifera_M_contig81917.19164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: S9X9R8_SCHCR (Polynucleotide adenylyltransferase n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9X9R8_SCHCR)

HSP 1 Score: 55.1 bits (131), Expect = 8.020e-7
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQH----QSASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILSTLP 264
            +  +GELLL+FF +YG  +D K   +SVR+G LL K+         + L +E+P     N+A   D   +  ++ E +RA R+LS  P
Sbjct:  268 KSSLGELLLDFFRYYGFVYDYKESVVSVRSGTLLDKRSKGWNMDMNNSLCVEEPFNTSRNLANTADDTSVKGLQSEFQRAFRLLSEYP 355
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: B8MQ17_TALSN (Polynucleotide adenylyltransferase n=1 Tax=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) TaxID=441959 RepID=B8MQ17_TALSN)

HSP 1 Score: 54.7 bits (130), Expect = 1.150e-6
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQ----SASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILST 258
            RQ +GELL +FF +YG E D + Y +SVR G+L+ K++        + L +E+P     N+    D      +  E RRA + +ST
Sbjct:  332 RQTLGELLFQFFRYYGHEVDYEKYVVSVREGKLISKEEKGWHLLQNNRLCVEEPFNTSRNLGNTADDTSFRGLHTELRRAFQAIST 417
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: A0A1E4TF59_9ASCO (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TF59_9ASCO)

HSP 1 Score: 52.8 bits (125), Expect = 5.070e-6
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQH----QSASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            +Q +GELL +FFEFYG +F   +  ISVRTG+++ K          +   +E+P     N+    D   +  ++ E RRA +ILS
Sbjct:  267 KQSLGELLYQFFEFYGYKFPYGSMCISVRTGKMISKSNKGWHLMQNNSFCVEEPFNISRNIGNTADEISVKGLQLEFRRACQILS 351
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: A1DF50_NEOFI (Polynucleotide adenylyltransferase n=27 Tax=Aspergillus TaxID=5052 RepID=A1DF50_NEOFI)

HSP 1 Score: 52.8 bits (125), Expect = 5.450e-6
Identity = 29/85 (34.12%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQ----SASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            +Q +GELL +FF +YG E D + Y ISVR G+L+ K++        + L +E+P     N+    D      +  E RRA + +S
Sbjct:  255 KQTLGELLFQFFRYYGHELDYEKYVISVREGKLISKEEKGWHLLQNNRLCVEEPFNTSRNLGNTADDTSFRGVHMELRRAFKAVS 339
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: A0A5N5WUT8_9EURO (Polynucleotide adenylyltransferase n=1 Tax=Aspergillus leporis TaxID=41062 RepID=A0A5N5WUT8_9EURO)

HSP 1 Score: 51.2 bits (121), Expect = 1.910e-5
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQ----SASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            +Q +GELL +FF++YG E D + Y++SVR G+L+ K+         + L +E+P     N+    D      +  E RRA +  S
Sbjct:  363 KQGLGELLFQFFKYYGHELDYEKYALSVREGKLISKEAKGWHLLQNNRLCVEEPFNTSRNLGNTADDTSFRGVHLELRRAFKAAS 447
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: A0A8H7UXL7_9FUNG (Polynucleotide adenylyltransferase n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UXL7_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 2.530e-5
Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 HEAMRQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQSASPLVIEDPIVPEWNVAA 189
            H      VGELL++FF +YG EFD   Y++S++ G     K     + + IEDP + + N+AA
Sbjct:  384 HSKNESSVGELLIDFFYYYGYEFDYDKYAVSLKFGGKTAIKSVWKQNDIAIEDPFMVKSNIAA 446
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BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: A2QGM0_ASPNC (Polynucleotide adenylyltransferase n=21 Tax=Aspergillus TaxID=5052 RepID=A2QGM0_ASPNC)

HSP 1 Score: 50.8 bits (120), Expect = 2.610e-5
Identity = 29/85 (34.12%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQ----SASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            +Q +GELL +FF++YG E D + + ISVR G+LL K+         + L +E+P     N+    D      +  E RRA + +S
Sbjct:  335 KQSLGELLFQFFKYYGHELDYERHVISVREGKLLSKEAKGWHLLQNNRLCVEEPFNTSRNLGNTADDTSFRGVHMELRRAFQAVS 419
[Close]
BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: V5FI26_BYSSN (Polynucleotide adenylyltransferase n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5FI26_BYSSN)

HSP 1 Score: 50.8 bits (120), Expect = 2.610e-5
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:    7 AMRQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQ----SASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            A +Q +G+LL +FF +YG E D + Y ISVR G+L+ K+         + L +E+P     N+    D      +  E RRA + +S
Sbjct:  333 ANKQSLGDLLFQFFRYYGHEIDYEKYVISVREGKLISKEAKGWHLLQNNRLCVEEPFNTSRNLGNTADDYSFRGLHLELRRAFKAVS 419
[Close]
BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: G2Y055_BOTF4 (Polynucleotide adenylyltransferase n=19 Tax=Sclerotiniaceae TaxID=28983 RepID=G2Y055_BOTF4)

HSP 1 Score: 50.8 bits (120), Expect = 2.620e-5
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:   22 VGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQSA----SPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            +GELL +FF FYG EFD     +SVR G  + K++ + A    + L +E+P   E N+    D      +  E RRA  ++S
Sbjct:  492 LGELLFQFFRFYGHEFDYDKQVVSVRMGRQISKEEKKWAIATNNMLCVEEPFNTERNLGNTADDFSFRGLHLEMRRAFELIS 573
[Close]
BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Match: A0A559MIW5_9HELO (Polynucleotide adenylyltransferase n=5 Tax=Lachnellula TaxID=47830 RepID=A0A559MIW5_9HELO)

HSP 1 Score: 50.8 bits (120), Expect = 2.620e-5
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   13 RQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQ----SASPLVIEDPIVPEWNVAACVDAKGLHKIRKECRRATRILS 255
            ++ VGELL +FF FYG EFD   + +SVR G+ + K + +    + + L +E+P     N+    D      +  E RRA  ++S
Sbjct:  500 KETVGELLFQFFRFYGHEFDYDKHVVSVRNGKQISKVEKKWHLGNNNILCVEEPFKVVRNLGNTADETSFRGLHLEIRRAFNLIS 584
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81917.19164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
S9X9R8_SCHCR8.020e-735.23Polynucleotide adenylyltransferase n=1 Tax=Schizos... [more]
B8MQ17_TALSN1.150e-634.88Polynucleotide adenylyltransferase n=1 Tax=Talarom... [more]
A0A1E4TF59_9ASCO5.070e-635.29Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]
A1DF50_NEOFI5.450e-634.12Polynucleotide adenylyltransferase n=27 Tax=Asperg... [more]
A0A5N5WUT8_9EURO1.910e-532.94Polynucleotide adenylyltransferase n=1 Tax=Aspergi... [more]
A0A8H7UXL7_9FUNG2.530e-538.10Polynucleotide adenylyltransferase n=1 Tax=Mucor s... [more]
A2QGM0_ASPNC2.610e-534.12Polynucleotide adenylyltransferase n=21 Tax=Asperg... [more]
V5FI26_BYSSN2.610e-533.33Polynucleotide adenylyltransferase n=2 Tax=Byssoch... [more]
G2Y055_BOTF42.620e-535.37Polynucleotide adenylyltransferase n=19 Tax=Sclero... [more]
A0A559MIW5_9HELO2.620e-532.94Polynucleotide adenylyltransferase n=5 Tax=Lachnel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81917contigM-pyrifera_M_contig81917:641..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.0
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog40483.S8DW05
KEGG koko:K13291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cid1 family poly A polymerase
EggNOG OGs226QF@155619,38EW5@33154,3H3HI@355688,3Q321@4751,3UZW2@5204,COG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.D
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size264
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.3125277-CDS-M-pyrifera_M_contig81917:640..8951622816726.3125277-CDS-M-pyrifera_M_contig81917:640..895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81917 641..895 -
1692278142.8951466-CDS-M-pyrifera_M_contig81917:640..8951692278142.8951466-CDS-M-pyrifera_M_contig81917:640..895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81917 641..895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.326604-UTR-M-pyrifera_M_contig81917:895..9041622816726.326604-UTR-M-pyrifera_M_contig81917:895..904Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81917 896..904 -
1692278142.910369-UTR-M-pyrifera_M_contig81917:895..9041692278142.910369-UTR-M-pyrifera_M_contig81917:895..904Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81917 896..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81917.19164.1prot_M-pyrifera_M_contig81917.19164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81917 641..895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81917.19164.1

>prot_M-pyrifera_M_contig81917.19164.1 ID=prot_M-pyrifera_M_contig81917.19164.1|Name=mRNA_M-pyrifera_M_contig81917.19164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MRQHVGELLLEFFEFYGTEFDPKTYSISVRTGELLRKKQHQSASPLVIED
PIVPEWNVAACVDAKGLHKIRKECRRATRILSTLP
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mRNA from alignment at M-pyrifera_M_contig81917:641..904-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81917.19164.1 ID=mRNA_M-pyrifera_M_contig81917.19164.1|Name=mRNA_M-pyrifera_M_contig81917.19164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig81917:641..904- (Macrocystis pyrifera P11B4 male)
CATGAGGCCATGCGGCAGCATGTGGGAGAGTTGCTCCTGGAGTTCTTTGA
ATTCTACGGCACTGAGTTCGATCCCAAGACGTACTCGATTAGTGTGAGGA
CTGGGGAACTTCTGCGCAAGAAGCAGCATCAGAGCGCGAGCCCCTTGGTC
ATCGAAGACCCCATTGTGCCCGAGTGGAACGTGGCTGCCTGCGTGGACGC
TAAGGGCCTCCATAAGATCCGTAAGGAGTGCAGGCGAGCAACGAGGATCC
TTTCGACCCTGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81917:641..904-

>mRNA_M-pyrifera_M_contig81917.19164.1 ID=mRNA_M-pyrifera_M_contig81917.19164.1|Name=mRNA_M-pyrifera_M_contig81917.19164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig81917:641..904- (Macrocystis pyrifera P11B4 male)
ATGCGGCAGCATGTGGGAGAGTTGCTCCTGGAGTTCTTTGAATTCTACGG
CACTGAGTTCGATCCCAAGACGTACTCGATTAGTGTGAGGACTGGGGAAC
TTCTGCGCAAGAAGCAGCATCAGAGCGCGAGCCCCTTGGTCATCGAAGAC
CCCATTGTGCCCGAGTGGAACGTGGCTGCCTGCGTGGACGCTAAGGGCCT
CCATAAGATCCGTAAGGAGTGCAGGCGAGCAACGAGGATCCTTTCGACCC
TGCCTATGCGGCAGCATGTGGGAGAGTTGCTCCTGGAGTTCTTTGAATTC
TACGGCACTGAGTTCGATCCCAAGACGTACTCGATTAGTGTGAGGACTGG
GGAACTTCTGCGCAAGAAGCAGCATCAGAGCGCGAGCCCCTTGGTCATCG
AAGACCCCATTGTGCCCGAGTGGAACGTGGCTGCCTGCGTGGACGCTAAG
GGCCTCCATAAGATCCGTAAGGAGTGCAGGCGAGCAACGAGGATCCTTTC
GACCCTGCCT
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