mRNA_M-pyrifera_M_contig81915.19163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81915.19163.1
Unique NamemRNA_M-pyrifera_M_contig81915.19163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Match: UPI001986E4DE (zf-HC2 domain-containing protein n=1 Tax=Streptomyces echinoruber TaxID=68898 RepID=UPI001986E4DE)

HSP 1 Score: 74.3 bits (181), Expect = 2.040e-15
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   13 RRRKSGPSCEEVMEVLQSYLDGETDAETARSVAAHLEVCEGCGPEAAVFRRIKLSLHQQSEPVDPAVLSSLEAFGRRL 246
            R  + G +C +   VLQ+YLDGETD  TAR +AAHLE C  CGPEA  +RRIK +L ++SEP DP  +  L  F   L
Sbjct:    9 RPAQRGMTCMKAARVLQAYLDGETDEVTARRMAAHLEDCGRCGPEAETYRRIKGALARRSEP-DPDAVKRLRKFAEGL 85
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BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Match: UPI001F3DDA1B (zf-HC2 domain-containing protein n=1 Tax=Streptomyces acididurans TaxID=2784346 RepID=UPI001F3DDA1B)

HSP 1 Score: 66.2 bits (160), Expect = 3.080e-12
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 MKFFRRRKSGP---SCEEVMEVLQSYLDGETDAETARSVAAHLEVCEGCGPEAAVFRRIKLSLHQQSEPVDPAVLSSLEAFGRRL 246
            M+ FR   +G    +C  V  VLQSYLDGETDA T R V AHLE C  CG EAAV R IK +  ++  P D   +  L  +GR L
Sbjct:    1 MRRFRPGSAGHRRMNCLRVQRVLQSYLDGETDAATVRRVEAHLEDCRRCGLEAAVHREIKAAFTRREAP-DRDAVERLTEWGRSL 84
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BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Match: UPI0017D39AE3 (Zf-HC2 domain-containing protein n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI0017D39AE3)

HSP 1 Score: 64.7 bits (156), Expect = 7.730e-12
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   37 CEEVMEVLQSYLDGETDAETARSVAAHLEVCEGCGPEAAVFRRIKLSLHQQSEPVDPAVLSSLEAFGRRLASGGPN 264
            C  V  V+QSYLDG TDA TAR V  HLEVC  CG EA  +R I  +L Q   P + A L  L AFG  L    P+
Sbjct:    3 CWRVSRVVQSYLDGHTDAVTARRVREHLEVCRRCGLEAETYRAIIDALAQNGRPAETA-LDRLRAFGDGLLEVPPD 77
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BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Match: UPI001E5E8797 (zf-HC2 domain-containing protein n=1 Tax=Streptomyces gobiensis TaxID=2875706 RepID=UPI001E5E8797)

HSP 1 Score: 58.2 bits (139), Expect = 3.120e-9
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   55 VLQSYLDGETDAETARSVAAHLEVCEGCGPEAAVFRRIKLSLHQQSEPVDPAVLSSLEAFGRRLASGG 258
            +LQSYLD ETDA TAR V AHL+ C  C  +A  F++++ SL +   P D A +  L  F   L  GG
Sbjct:    5 LLQSYLDRETDAATARHVGAHLDECHHCDRDARTFQQLRSSLTRHGGP-DEAAVGRLHDFAHSLLRGG 71
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BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Match: A0A537VCH2_9ACTN (Anti-sigma factor n=3 Tax=Terrabacteria group TaxID=1783272 RepID=A0A537VCH2_9ACTN)

HSP 1 Score: 48.9 bits (115), Expect = 1.110e-5
Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   34 SCEEVMEVLQSYLDGETDAETARSVAAHLEVCEGCGPEAAVFRR-IKLSLHQQSEPVDPAVLSSL-EAF 234
            SC+EV+E+L +YLDGE D  T   V AHL  C+GC      FR  I+LS     E VD     +L EAF
Sbjct:    2 SCQEVVELLSAYLDGELDPTTLERVEAHLAGCDGCTMVLEEFRETIRLSGGLTVEQVDETQRRTLLEAF 70
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BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Match: A0A7X5WAY2_9BACT (zf-HC2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X5WAY2_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 2.220e-5
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   34 SCEEVMEVLQSYLDGETDAETARSVAAHLEVCEGCGPEAAVFRRIKLSLHQ--QSEPVDP 207
            SC+E +E L  YLDGE  A ++  V  H+EVCE C PE       + +LH+  + +P+ P
Sbjct:    7 SCQEALERLYEYLDGELTARSSDEVRHHIEVCEACYPEVKFTTEFRDALHRAARGQPLCP 66
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81915.19163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001986E4DE2.040e-1551.28zf-HC2 domain-containing protein n=1 Tax=Streptomy... [more]
UPI001F3DDA1B3.080e-1248.24zf-HC2 domain-containing protein n=1 Tax=Streptomy... [more]
UPI0017D39AE37.730e-1250.00Zf-HC2 domain-containing protein n=1 Tax=Catenulis... [more]
UPI001E5E87973.120e-945.59zf-HC2 domain-containing protein n=1 Tax=Streptomy... [more]
A0A537VCH2_9ACTN1.110e-546.38Anti-sigma factor n=3 Tax=Terrabacteria group TaxI... [more]
A0A7X5WAY2_9BACT2.220e-540.00zf-HC2 domain-containing protein n=1 Tax=Gemmatimo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81915contigM-pyrifera_M_contig81915:528..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.7
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog100226.SCO3449
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative zinc-finger
EggNOG OGs291EA@1,2ITEP@201174,2ZP15@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.2755294-CDS-M-pyrifera_M_contig81915:527..7971622816726.2755294-CDS-M-pyrifera_M_contig81915:527..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81915 528..797 -
1692278142.88221-CDS-M-pyrifera_M_contig81915:527..7971692278142.88221-CDS-M-pyrifera_M_contig81915:527..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81915 528..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81915.19163.1prot_M-pyrifera_M_contig81915.19163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81915 528..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81915.19163.1

>prot_M-pyrifera_M_contig81915.19163.1 ID=prot_M-pyrifera_M_contig81915.19163.1|Name=mRNA_M-pyrifera_M_contig81915.19163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MKFFRRRKSGPSCEEVMEVLQSYLDGETDAETARSVAAHLEVCEGCGPEA
AVFRRIKLSLHQQSEPVDPAVLSSLEAFGRRLASGGPNL*
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mRNA from alignment at M-pyrifera_M_contig81915:528..797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81915.19163.1 ID=mRNA_M-pyrifera_M_contig81915.19163.1|Name=mRNA_M-pyrifera_M_contig81915.19163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig81915:528..797- (Macrocystis pyrifera P11B4 male)
ATGAAGTTCTTCCGACGCCGCAAGAGTGGGCCATCGTGTGAGGAAGTCAT
GGAGGTGCTCCAGAGCTACCTCGACGGAGAGACCGACGCCGAAACCGCTC
GTTCGGTGGCCGCCCACCTCGAGGTCTGCGAGGGCTGTGGACCAGAAGCC
GCCGTCTTCCGACGGATCAAACTGTCGCTCCATCAGCAATCCGAGCCCGT
CGATCCCGCCGTCCTGTCCAGCCTCGAGGCCTTCGGCCGACGCCTGGCTT
CGGGCGGACCGAACCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81915:528..797-

>mRNA_M-pyrifera_M_contig81915.19163.1 ID=mRNA_M-pyrifera_M_contig81915.19163.1|Name=mRNA_M-pyrifera_M_contig81915.19163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig81915:528..797- (Macrocystis pyrifera P11B4 male)
ATGAAGTTCTTCCGACGCCGCAAGAGTGGGCCATCGTGTGAGGAAGTCAT
GGAGGTGCTCCAGAGCTACCTCGACGGAGAGACCGACGCCGAAACCGCTC
GTTCGGTGGCCGCCCACCTCGAGGTCTGCGAGGGCTGTGGACCAGAAGCC
GCCGTCTTCCGACGGATCAAACTGTCGCTCCATCAGCAATCCGAGCCCGT
CGATCCCGCCGTCCTGTCCAGCCTCGAGGCCTTCGGCCGACGCCTGGCTT
CGGGCGGACCGAACCTCTGAATGAAGTTCTTCCGACGCCGCAAGAGTGGG
CCATCGTGTGAGGAAGTCATGGAGGTGCTCCAGAGCTACCTCGACGGAGA
GACCGACGCCGAAACCGCTCGTTCGGTGGCCGCCCACCTCGAGGTCTGCG
AGGGCTGTGGACCAGAAGCCGCCGTCTTCCGACGGATCAAACTGTCGCTC
CATCAGCAATCCGAGCCCGTCGATCCCGCCGTCCTGTCCAGCCTCGAGGC
CTTCGGCCGACGCCTGGCTTCGGGCGGACCGAACCTCTGA
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