mRNA_M-pyrifera_M_contig81872.19157.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81872.19157.1
Unique NamemRNA_M-pyrifera_M_contig81872.19157.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: A0A5A8CRD9_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRD9_CAFRO)

HSP 1 Score: 296 bits (757), Expect = 6.420e-89
Identity = 140/229 (61.14%), Postives = 181/229 (79.04%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDFSHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRWM 687
            AVKV++K  L+  E++LLRTE+A+L++V+HP IIRLE V+ETG  + IV EL++GGE F RIVGR RFSE+EAR +A+PLIE++ YLH LGIVHRDIKPENIL    L D+KIADFGLS +V P + +T PCGTLSYVAPEVL M+GYG+  D+WSVGVILYLVVRG+LPFD     +V+R  + A V F+   W  WS++G+DF+R+LL+RDP  RLT ++AL+H W+
Sbjct: 1176 AVKVINKTKLKPSERELLRTEIAVLKLVQHPHIIRLENVYETGATMFIVMELLEGGEFFGRIVGRERFSEEEARTVAKPLIESVAYLHSLGIVHRDIKPENILCGRRLQDLKIADFGLSKLVYPDEVMTMPCGTLSYVAPEVLSMQGYGRQADLWSVGVILYLVVRGRLPFDSDDHSEVVRGIIEARVSFNDACWDSWSANGLDFMRQLLKRDPKRRLTARKALQHPWL 1404
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: M4BEL0_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEL0_HYAAE)

HSP 1 Score: 265 bits (676), Expect = 2.960e-85
Identity = 133/232 (57.33%), Postives = 177/232 (76.29%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRWMKS 693
            AVK++DK++L+  E++LLRTE+AIL++V HPRII+L  V+E  + + IV ELV GGELF+ IV R+R++E EAR +   L+E++ YLH LGIVHRD+KPENIL   SL +IKIADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF+GKTK DVI+KTL+A VD  +   WRR SS G + +R LL +DP  RLT Q AL H W  +
Sbjct:   88 AVKIIDKSTLKAHERELLRTEIAILKLVHHPRIIQLYDVYEDRQFIFIVMELVSGGELFNCIVKRARYTEAEARLIMYSLLESVHYLHQLGIVHRDLKPENILCGDSLTEIKIADFGLSKLVCPDEVMKVPCGTLNYVAPEVLALVGYGREADLWSLGVIMYLLLRGELPFNGKTKGDVIKKTLHAVVDLETDPAWRRISSAGKELLRGLLTKDPATRLTAQDALGHDWFSN 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: G5AA05_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AA05_PHYSP)

HSP 1 Score: 271 bits (692), Expect = 4.120e-83
Identity = 134/232 (57.76%), Postives = 178/232 (76.72%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRWMKS 693
            AVK++DK+ L+  EK+LLRTE+AIL++VRHP IIRL  V+E  + + IVTELV GGELF+RIVGR+R++E EAR + RPL+E+++YLH LGIVHRD+KPENIL   +L D+KIADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF GK K +VI+KTL+A V+  + + WR  S  G   +R LL +DP  RLT Q AL H W  +
Sbjct:  467 AVKIIDKSKLQPTEKELLRTEIAILKLVRHPNIIRLYDVYEDRQYIFIVTELVSGGELFNRIVGRARYTEAEARLVMRPLLESVNYLHRLGIVHRDLKPENILCGEALTDLKIADFGLSKLVHPEELMKMPCGTLNYVAPEVLALVGYGREADIWSLGVIMYLLLRGELPFYGKAKSEVIQKTLHAEVNLETDSAWRNVSPAGKALLRGLLTKDPARRLTAQDALLHEWFSA 698
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: D0N994_PHYIT (Protein kinase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N994_PHYIT)

HSP 1 Score: 270 bits (691), Expect = 4.730e-83
Identity = 134/229 (58.52%), Postives = 177/229 (77.29%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVK++DK+ L+  EK+LLRTE+AIL++V HP IIRL  V+E  + + IVTELV GGELF+RIVGR+R++E EAR + RPL+E+++YLH LGIVHRD+KPENIL   +L D+KIADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF GK K +VI+KTL+A V+  + + WR  SS G   +R LL +DP  RLT Q AL H W
Sbjct:  465 AVKIIDKSKLQPTEKELLRTEIAILKLVHHPNIIRLYDVYEDRQYIFIVTELVSGGELFNRIVGRARYTEAEARLVMRPLLESVNYLHRLGIVHRDLKPENILCGEALTDLKIADFGLSKLVHPEELMKMPCGTLNYVAPEVLALVGYGREADIWSLGVIMYLLLRGELPFYGKAKSEVIQKTLHAEVNLETDSAWRSVSSAGKALLRGLLTKDPACRLTAQDALLHEW 693
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: A0A662YAD9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAD9_9STRA)

HSP 1 Score: 269 bits (687), Expect = 6.450e-83
Identity = 131/229 (57.21%), Postives = 176/229 (76.86%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVK++DK+ L+  EK+LLRTE+AIL++VRHP ++RL  V+E  + + +VTELV GGELF+RIVGR+R++E EAR + RPL+E++ YLH LGIVHRD+KPENIL   +L D+KIADFGLS +  P + L  PCGTL+YVAPEVL + GYG+  D+WS+GVIL+L++RG+LPF GKTK +VI+KTL+A ++  +   WR  S  G   +R LL +DP  RLT Q AL+H W
Sbjct:  406 AVKIIDKSKLQAAEKELLRTEIAILKLVRHPNLVRLHDVYEDKQYMYLVTELVTGGELFNRIVGRARYTEAEARLVMRPLLESVSYLHRLGIVHRDLKPENILCGEALTDLKIADFGLSKLAHPEELLKMPCGTLNYVAPEVLALVGYGREADIWSLGVILFLLLRGELPFYGKTKSEVIQKTLHAEINLETDATWRSVSPAGKALLRGLLSKDPARRLTAQDALQHEW 634
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: W2JJQ6_PHYPR (CAMK/CAMK1 protein kinase n=10 Tax=Phytophthora TaxID=4783 RepID=W2JJQ6_PHYPR)

HSP 1 Score: 269 bits (687), Expect = 4.170e-82
Identity = 133/229 (58.08%), Postives = 175/229 (76.42%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVK++DK+ L+  EK+LLRTE+AIL++V HP IIRL  V+E  + + IVTELV GGELF+RIVGR+R++E EAR + RPL+E++ YLH LGIVHRD+KPENIL   +L D+KIADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF GK K +VI+KTL+A V+  + + WR  S  G   +R LL +DP  RLT Q AL H W
Sbjct:  497 AVKIIDKSKLQPTEKELLRTEIAILKLVHHPNIIRLYDVYEDRQYIFIVTELVSGGELFNRIVGRARYTEAEARLVMRPLLESVSYLHRLGIVHRDLKPENILCGEALTDLKIADFGLSKLVHPEELMKMPCGTLNYVAPEVLALVGYGREADIWSLGVIMYLLLRGELPFYGKAKSEVIQKTLHAEVNLETDSAWRSVSPSGKSLLRGLLTKDPAHRLTAQDALLHEW 725
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: A0A3F2REN5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REN5_9STRA)

HSP 1 Score: 267 bits (683), Expect = 8.220e-82
Identity = 132/229 (57.64%), Postives = 174/229 (75.98%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVKV+DK+ L+  EK+LLRTE+AIL++V HP IIRL  V+E  + + IVTELV GGELF+RIVGR+R++E EAR +  PL+E++ YLH LGIVHRD+KPENIL   +L D+KIADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF GK K +VI+KTL+A ++  +   WR  S  G   +R LL +DP  RLT Q AL+H W
Sbjct:  471 AVKVIDKSKLQLTEKELLRTEIAILKLVHHPNIIRLHDVYEDRQYIFIVTELVSGGELFNRIVGRARYTEAEARLVMSPLLESVSYLHRLGIVHRDLKPENILCGETLTDLKIADFGLSKLVHPEELMKMPCGTLNYVAPEVLALVGYGREADIWSLGVIMYLLLRGELPFYGKAKSEVIQKTLHAEINLDTDAAWRSVSPAGKSLLRGLLTKDPARRLTAQDALQHEW 699
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: A0A2P4Y963_9STRA (CAMK/CAMK1 protein Kinase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y963_9STRA)

HSP 1 Score: 265 bits (678), Expect = 3.530e-81
Identity = 132/229 (57.64%), Postives = 173/229 (75.55%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDFS-HTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVK++DK+ L+  EK+LLRTE+AIL++VRHP IIRL  V+E  + + IVTELV GGELF+RIVGR+R++E EAR +  PL+E++ YLH LGIVHRD+KPENIL   +L D+KIADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF GK K +VI+KTL+A ++      WR  S  G   +R LL +DP  RLT Q AL H W
Sbjct:  466 AVKIIDKSKLQPTEKELLRTEIAILKLVRHPNIIRLFDVYEDRQYIFIVTELVSGGELFNRIVGRARYTEAEARLVMVPLLESVSYLHRLGIVHRDLKPENILCGDALTDLKIADFGLSKLVHPEELMKMPCGTLNYVAPEVLALVGYGREADIWSLGVIMYLLLRGELPFYGKAKSEVIQKTLHAEINLEIDPAWRSVSPAGKSLLRGLLTKDPARRLTAQDALLHEW 694
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: H3GVF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVF0_PHYRM)

HSP 1 Score: 266 bits (680), Expect = 3.680e-81
Identity = 132/229 (57.64%), Postives = 175/229 (76.42%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVK++DK+ L+  EK+LLRTE+AIL++VRHP II+L  V+E  + + IVTELV GGELF+RIVGR+R++E EAR + RPL+E+++YLH LGIVHRD+KPENIL   +L D+KIADFGLS +  P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVI+YL++RG+LPF GK K +VI+KTL+A V+  +   WR  S  G   +R LL +DP  RLT Q AL H W
Sbjct:  491 AVKIIDKSKLQPTEKELLRTEIAILKLVRHPNIIQLHDVYEDRQYIFIVTELVSGGELFNRIVGRARYTEAEARLVMRPLLESVNYLHRLGIVHRDLKPENILCGEALTDLKIADFGLSKLAHPEELMKMPCGTLNYVAPEVLALVGYGREADIWSLGVIMYLLLRGELPFYGKAKSEVIQKTLHAEVNLETDAAWRSVSPAGKALLRGLLTKDPARRLTAQDALVHDW 719
[Close]
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Match: A0A484EDP3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDP3_BRELC)

HSP 1 Score: 261 bits (667), Expect = 1.310e-79
Identity = 131/229 (57.21%), Postives = 169/229 (73.80%), Query Frame = 1 
Query:    1 AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVTELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPENILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGKAVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDF-SHTVWRRWSSDGVDFIRKLLERDPLLRLTTQQALRHRW 684
            AVK++DK+ LR  EK+LLRTE+A+L++V HP IIRL  V E  + + IVT+LV GGELF+RIV RSR++E EAR + RPL E++ YLH LGIVHRD+KPENIL   +L D+ IADFGLS +V P + +  PCGTL+YVAPEVL + GYG+  D+WS+GVILYL++RG+LPF GK K +VI+KTL A ++  S   W+  S  G   +R LL +DP  RLT Q AL H W
Sbjct:  460 AVKIIDKSKLRPPEKELLRTEIAVLKLVHHPNIIRLHDVFEDRQYIHIVTDLVSGGELFNRIVSRSRYTEAEARLVMRPLFESVKYLHRLGIVHRDLKPENILCGEALTDVTIADFGLSKLVHPEELMKMPCGTLNYVAPEVLTLEGYGREADLWSLGVILYLLLRGELPFYGKGKSEVIQKTLLAKINLESDLAWKNVSLAGKSLLRGLLMKDPSRRLTAQNALLHEW 688
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81872.19157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CRD9_CAFRO6.420e-8961.14Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
M4BEL0_HYAAE2.960e-8557.33Protein kinase domain-containing protein n=1 Tax=H... [more]
G5AA05_PHYSP4.120e-8357.76Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
D0N994_PHYIT4.730e-8358.52Protein kinase, putative n=1 Tax=Phytophthora infe... [more]
A0A662YAD9_9STRA6.450e-8357.21Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2JJQ6_PHYPR4.170e-8258.08CAMK/CAMK1 protein kinase n=10 Tax=Phytophthora Ta... [more]
A0A3F2REN5_9STRA8.220e-8257.64Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2P4Y963_9STRA3.530e-8157.64CAMK/CAMK1 protein Kinase n=1 Tax=Phytophthora pal... [more]
H3GVF0_PHYRM3.680e-8157.64Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A484EDP3_BRELC1.310e-7957.21Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81872contigM-pyrifera_M_contig81872:5..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.8
Seed ortholog evalue1.9e-71
Seed eggNOG ortholog67593.Physo138229
KEGG koko:K08794,ko:K08808
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Serine/Threonine protein kinases, catalytic domain
EggNOG OGs3Q8DQ@4776,KOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size693
Cds size693
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.9910362-CDS-M-pyrifera_M_contig81872:4..6971622816725.9910362-CDS-M-pyrifera_M_contig81872:4..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81872 5..697 +
1692278142.7202907-CDS-M-pyrifera_M_contig81872:4..6971692278142.7202907-CDS-M-pyrifera_M_contig81872:4..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81872 5..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81872.19157.1prot_M-pyrifera_M_contig81872.19157.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81872 5..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81872.19157.1

>prot_M-pyrifera_M_contig81872.19157.1 ID=prot_M-pyrifera_M_contig81872.19157.1|Name=mRNA_M-pyrifera_M_contig81872.19157.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=231bp
AVKVVDKNSLRHEEKDLLRTELAILRIVRHPRIIRLEGVHETGRKLLIVT
ELVQGGELFDRIVGRSRFSEDEARRLARPLIEAIDYLHGLGIVHRDIKPE
NILTDTSLFDIKIADFGLSVMVRPGQELTTPCGTLSYVAPEVLDMRGYGK
AVDMWSVGVILYLVVRGKLPFDGKTKEDVIRKTLNANVDFSHTVWRRWSS
DGVDFIRKLLERDPLLRLTTQQALRHRWMKS
back to top

mRNA from alignment at M-pyrifera_M_contig81872:5..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81872.19157.1 ID=mRNA_M-pyrifera_M_contig81872.19157.1|Name=mRNA_M-pyrifera_M_contig81872.19157.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=693bp|location=Sequence derived from alignment at M-pyrifera_M_contig81872:5..697+ (Macrocystis pyrifera P11B4 male)
GCAGTCAAAGTTGTGGACAAGAATTCTCTTCGACACGAAGAAAAAGATCT
CTTGCGCACAGAACTTGCTATCTTACGCATTGTACGACACCCACGAATCA
TTCGACTCGAAGGAGTCCATGAAACGGGTCGCAAACTTCTCATCGTCACA
GAACTGGTCCAAGGTGGTGAGTTATTTGATCGGATTGTGGGACGTTCCAG
GTTTTCAGAAGATGAAGCGCGTCGTCTCGCACGCCCCTTGATTGAAGCCA
TTGATTATCTCCATGGTCTTGGAATTGTCCATCGTGATATCAAACCAGAA
AACATTCTCACAGACACTTCCCTTTTTGACATCAAGATTGCAGACTTTGG
ATTGTCTGTCATGGTTCGACCAGGACAAGAGCTCACTACACCATGTGGTA
CCCTTTCTTACGTGGCTCCCGAAGTGCTTGATATGCGAGGATATGGCAAA
GCAGTGGATATGTGGTCTGTTGGTGTGATCTTGTATCTAGTTGTTCGCGG
CAAGCTTCCTTTTGACGGCAAAACCAAAGAAGACGTCATTCGCAAGACCC
TTAACGCCAACGTTGACTTTTCACACACAGTATGGCGTCGATGGAGTTCA
GACGGAGTTGATTTCATCCGCAAACTCCTTGAACGCGACCCACTCTTGCG
CCTCACAACGCAGCAAGCTCTCCGTCATCGTTGGATGAAAAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81872:5..697+

>mRNA_M-pyrifera_M_contig81872.19157.1 ID=mRNA_M-pyrifera_M_contig81872.19157.1|Name=mRNA_M-pyrifera_M_contig81872.19157.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1386bp|location=Sequence derived from alignment at M-pyrifera_M_contig81872:5..697+ (Macrocystis pyrifera P11B4 male)
GCAGTCAAAGTTGTGGACAAGAATTCTCTTCGACACGAAGAAAAAGATCT
CTTGCGCACAGAACTTGCTATCTTACGCATTGTACGACACCCACGAATCA
TTCGACTCGAAGGAGTCCATGAAACGGGTCGCAAACTTCTCATCGTCACA
GAACTGGTCCAAGGTGGTGAGTTATTTGATCGGATTGTGGGACGTTCCAG
GTTTTCAGAAGATGAAGCGCGTCGTCTCGCACGCCCCTTGATTGAAGCCA
TTGATTATCTCCATGGTCTTGGAATTGTCCATCGTGATATCAAACCAGAA
AACATTCTCACAGACACTTCCCTTTTTGACATCAAGATTGCAGACTTTGG
ATTGTCTGTCATGGTTCGACCAGGACAAGAGCTCACTACACCATGTGGTA
CCCTTTCTTACGTGGCTCCCGAAGTGCTTGATATGCGAGGATATGGCAAA
GCAGTGGATATGTGGTCTGTTGGTGTGATCTTGTATCTAGTTGTTCGCGG
CAAGCTTCCTTTTGACGGCAAAACCAAAGAAGACGTCATTCGCAAGACCC
TTAACGCCAACGTTGACTTTTCACACACAGTATGGCGTCGATGGAGTTCA
GACGGAGTTGATTTCATCCGCAAACTCCTTGAACGCGACCCACTCTTGCG
CCTCACAACGCAGCAAGCTCTCCGTCATCGTTGGATGAAAAGTGCAGTCA
AAGTTGTGGACAAGAATTCTCTTCGACACGAAGAAAAAGATCTCTTGCGC
ACAGAACTTGCTATCTTACGCATTGTACGACACCCACGAATCATTCGACT
CGAAGGAGTCCATGAAACGGGTCGCAAACTTCTCATCGTCACAGAACTGG
TCCAAGGTGGTGAGTTATTTGATCGGATTGTGGGACGTTCCAGGTTTTCA
GAAGATGAAGCGCGTCGTCTCGCACGCCCCTTGATTGAAGCCATTGATTA
TCTCCATGGTCTTGGAATTGTCCATCGTGATATCAAACCAGAAAACATTC
TCACAGACACTTCCCTTTTTGACATCAAGATTGCAGACTTTGGATTGTCT
GTCATGGTTCGACCAGGACAAGAGCTCACTACACCATGTGGTACCCTTTC
TTACGTGGCTCCCGAAGTGCTTGATATGCGAGGATATGGCAAAGCAGTGG
ATATGTGGTCTGTTGGTGTGATCTTGTATCTAGTTGTTCGCGGCAAGCTT
CCTTTTGACGGCAAAACCAAAGAAGACGTCATTCGCAAGACCCTTAACGC
CAACGTTGACTTTTCACACACAGTATGGCGTCGATGGAGTTCAGACGGAG
TTGATTTCATCCGCAAACTCCTTGAACGCGACCCACTCTTGCGCCTCACA
ACGCAGCAAGCTCTCCGTCATCGTTGGATGAAAAGT
back to top