mRNA_M-pyrifera_M_contig81862.19156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81862.19156.1
Unique NamemRNA_M-pyrifera_M_contig81862.19156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81862.19156.1 vs. uniprot
Match: A0A6S6T363_9PROT (Uncharacterized protein n=1 Tax=uncultured Sulfurovum sp. TaxID=269237 RepID=A0A6S6T363_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 1.010e-11
Identity = 44/158 (27.85%), Postives = 87/158 (55.06%), Query Frame = 1 
Query:   19 SVRALAAIPVLLEIMCVVVKDKERRKEALRGQVT--PIYKAAVEELVNRWVAKQGEDEKQRRVFRSKHWPVVHRFLCSLALRMWKERLVVVEGTIVLDEIDSVLRDAKVDAETKDTLLEKCLKDLGLIQPLESGVAVKDWGKMKWAFPHLTIQEYFAA 486
            ++R LA IP++LEI+C + ++K +  ++    +T   +Y   ++ L++ +  K+G +E  +R +R +    +  +  S+A    K + ++++G ++ + +      A ++ E +D  LEK +   GL   L+S    +D  K  + FPHLT QEYF+A
Sbjct:  134 NIRHLAYIPLMLEIICSIWREKAKSNQSFLSPMTMTELYSEVIDNLLSTYARKKGYEEVYKRRYRKQ----IVTYFGSIAFEALKNQTIIIDGEVLENSL------ANIETEDEDNFLEKNILYTGL---LKSNNKYQDPWKNSYQFPHLTFQEYFSA 278
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81862.19156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6S6T363_9PROT1.010e-1127.85Uncharacterized protein n=1 Tax=uncultured Sulfuro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81862contigM-pyrifera_M_contig81862:298..918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.952377-CDS-M-pyrifera_M_contig81862:297..9181622816725.952377-CDS-M-pyrifera_M_contig81862:297..918Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81862 298..918 -
1692278142.7085683-CDS-M-pyrifera_M_contig81862:297..9181692278142.7085683-CDS-M-pyrifera_M_contig81862:297..918Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81862 298..918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81862.19156.1prot_M-pyrifera_M_contig81862.19156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81862 298..918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81862.19156.1

>prot_M-pyrifera_M_contig81862.19156.1 ID=prot_M-pyrifera_M_contig81862.19156.1|Name=mRNA_M-pyrifera_M_contig81862.19156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
TFRTHKSVRALAAIPVLLEIMCVVVKDKERRKEALRGQVTPIYKAAVEEL
VNRWVAKQGEDEKQRRVFRSKHWPVVHRFLCSLALRMWKERLVVVEGTIV
LDEIDSVLRDAKVDAETKDTLLEKCLKDLGLIQPLESGVAVKDWGKMKWA
FPHLTIQEYFAAETFFGKAKKLLNGKDVDLVRLSVGVEGGFTAIYRHFLG
DSTLRAF
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mRNA from alignment at M-pyrifera_M_contig81862:298..918-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81862.19156.1 ID=mRNA_M-pyrifera_M_contig81862.19156.1|Name=mRNA_M-pyrifera_M_contig81862.19156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=621bp|location=Sequence derived from alignment at M-pyrifera_M_contig81862:298..918- (Macrocystis pyrifera P11B4 male)
ACGTTCCGAACACACAAGAGTGTTCGAGCTCTTGCAGCGATTCCAGTGCT
GTTGGAGATCATGTGTGTGGTTGTGAAGGACAAGGAGCGAAGGAAGGAGG
CATTGCGAGGTCAGGTGACTCCAATCTACAAGGCGGCAGTGGAGGAGCTT
GTGAATCGGTGGGTGGCGAAGCAAGGTGAAGATGAGAAGCAACGCCGAGT
GTTTCGCAGCAAGCACTGGCCTGTGGTGCATCGCTTCTTGTGTTCATTGG
CGTTGAGAATGTGGAAGGAGCGGTTGGTGGTTGTGGAAGGGACGATTGTT
CTCGACGAGATTGATTCCGTTTTACGAGACGCAAAAGTAGATGCGGAAAC
AAAGGATACACTGTTGGAAAAGTGTCTGAAGGATTTAGGACTCATTCAGC
CTCTCGAATCTGGAGTTGCTGTGAAGGATTGGGGAAAGATGAAGTGGGCA
TTTCCTCATCTCACAATACAGGAGTATTTCGCTGCAGAGACTTTTTTTGG
CAAGGCTAAGAAGTTGTTGAACGGGAAGGATGTGGATTTGGTTCGACTTA
GTGTTGGAGTGGAGGGTGGATTCACAGCCATTTACAGGCACTTTCTCGGA
GATTCTACACTGAGAGCTTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81862:298..918-

>mRNA_M-pyrifera_M_contig81862.19156.1 ID=mRNA_M-pyrifera_M_contig81862.19156.1|Name=mRNA_M-pyrifera_M_contig81862.19156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig81862:298..918- (Macrocystis pyrifera P11B4 male)
ACGTTCCGAACACACAAGAGTGTTCGAGCTCTTGCAGCGATTCCAGTGCT
GTTGGAGATCATGTGTGTGGTTGTGAAGGACAAGGAGCGAAGGAAGGAGG
CATTGCGAGGTCAGGTGACTCCAATCTACAAGGCGGCAGTGGAGGAGCTT
GTGAATCGGTGGGTGGCGAAGCAAGGTGAAGATGAGAAGCAACGCCGAGT
GTTTCGCAGCAAGCACTGGCCTGTGGTGCATCGCTTCTTGTGTTCATTGG
CGTTGAGAATGTGGAAGGAGCGGTTGGTGGTTGTGGAAGGGACGATTGTT
CTCGACGAGATTGATTCCGTTTTACGAGACGCAAAAGTAGATGCGGAAAC
AAAGGATACACTGTTGGAAAAGTGTCTGAAGGATTTAGGACTCATTCAGC
CTCTCGAATCTGGAGTTGCTGTGAAGGATTGGGGAAAGATGAAGTGGGCA
TTTCCTCATCTCACAATACAGGAGTATTTCGCTGCAGAGACTTTTTTTGG
CAAGGCTAAGAAGTTGTTGAACGGGAAGGATGTGGATTTGGTTCGACTTA
GTGTTGGAGTGGAGGGTGGATTCACAGCCATTTACAGGCACTTTCTCGGA
GATTCTACACTGAGAGCTTTCACGTTCCGAACACACAAGAGTGTTCGAGC
TCTTGCAGCGATTCCAGTGCTGTTGGAGATCATGTGTGTGGTTGTGAAGG
ACAAGGAGCGAAGGAAGGAGGCATTGCGAGGTCAGGTGACTCCAATCTAC
AAGGCGGCAGTGGAGGAGCTTGTGAATCGGTGGGTGGCGAAGCAAGGTGA
AGATGAGAAGCAACGCCGAGTGTTTCGCAGCAAGCACTGGCCTGTGGTGC
ATCGCTTCTTGTGTTCATTGGCGTTGAGAATGTGGAAGGAGCGGTTGGTG
GTTGTGGAAGGGACGATTGTTCTCGACGAGATTGATTCCGTTTTACGAGA
CGCAAAAGTAGATGCGGAAACAAAGGATACACTGTTGGAAAAGTGTCTGA
AGGATTTAGGACTCATTCAGCCTCTCGAATCTGGAGTTGCTGTGAAGGAT
TGGGGAAAGATGAAGTGGGCATTTCCTCATCTCACAATACAGGAGTATTT
CGCTGCAGAGACTTTTTTTGGCAAGGCTAAGAAGTTGTTGAACGGGAAGG
ATGTGGATTTGGTTCGACTTAGTGTTGGAGTGGAGGGTGGATTCACAGCC
ATTTACAGGCACTTTCTCGGAGATTCTACACTGAGAGCTTTC
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