mRNA_M-pyrifera_M_contig8186.19155.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8186.19155.1
Unique NamemRNA_M-pyrifera_M_contig8186.19155.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8186.19155.1 vs. uniprot
Match: A0A6H5L9N5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9N5_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 3.200e-100
Identity = 164/248 (66.13%), Postives = 196/248 (79.03%), Query Frame = 1 
Query:    4 AVKSGQAMVVWAGGEAAATGVSTALVAVGVSSVVAPVVAVIVLVGHVIIKGTALAVKKRLQVRTEQKAHFEDLSLTE--ARTSD-HFTIFIHGTRAPGECSAYVSSTDYRSHAPVSADALNGISKLIGGSAKCNVRDMGGFTENLPTPFNVRISMPDVIALMRQSWTYERFCKTKCGSMTIVVLRSQNS--KAKLRVAWDNSGSPDCCKAKVYTVEEWKKTPFAGKTTTMPEKVADVDMALDRTLVFE 732
            AV   QA+V WAGGEAA+TGVS A+VA G++++VAP VAVIVLVGHVI++G+  AVKK+L+VR EQKAH E L+LTE  AR+S  HFT+ ++G    GE ++YVS  D  S+  VS   L GISKLI G+  CNVRDMGG+TE    PF VRISMPDV+ALMRQSW YERFC+TKCG+MT+VVLRSQ+S  K KLRVAW+NSGS D  KA+VYT  EWKKT FAGKT TMPE +ADVDMALD+TLVF+
Sbjct:   48 AVDRSQAIVKWAGGEAASTGVSAAMVAAGITTLVAPTVAVIVLVGHVIVRGSIRAVKKKLKVRAEQKAHLEQLNLTETTARSSSGHFTVVLNGVGPNGEFNSYVSPNDDASYRAVSPGHLKGISKLISGATNCNVRDMGGYTEGAAVPFCVRISMPDVLALMRQSWVYERFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVFD 295
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8186.19155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9N5_9PHAE3.200e-10066.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8186contigM-pyrifera_M_contig8186:1508..3175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004630.1
Exons2
Model size735
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8186.19155.1prot_M-pyrifera_M_contig8186.19155.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8186 1508..3151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.8806713-CDS-M-pyrifera_M_contig8186:1507..20561622816725.8806713-CDS-M-pyrifera_M_contig8186:1507..2056Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8186 1508..2056 -
1692278142.6750643-CDS-M-pyrifera_M_contig8186:1507..20561692278142.6750643-CDS-M-pyrifera_M_contig8186:1507..2056Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8186 1508..2056 -
1622816725.8940082-CDS-M-pyrifera_M_contig8186:2989..31511622816725.8940082-CDS-M-pyrifera_M_contig8186:2989..3151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8186 2990..3151 -
1692278142.684932-CDS-M-pyrifera_M_contig8186:2989..31511692278142.684932-CDS-M-pyrifera_M_contig8186:2989..3151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8186 2990..3151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.9094143-UTR-M-pyrifera_M_contig8186:3151..31751622816725.9094143-UTR-M-pyrifera_M_contig8186:3151..3175Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8186 3152..3175 -
1692278142.6933389-UTR-M-pyrifera_M_contig8186:3151..31751692278142.6933389-UTR-M-pyrifera_M_contig8186:3151..3175Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8186 3152..3175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8186.19155.1

>prot_M-pyrifera_M_contig8186.19155.1 ID=prot_M-pyrifera_M_contig8186.19155.1|Name=mRNA_M-pyrifera_M_contig8186.19155.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=237bp
MVVWAGGEAAATGVSTALVAVGVSSVVAPVVAVIVLVGHVIIKGTALAVK
KRLQVRTEQKAHFEDLSLTEARTSDHFTIFIHGTRAPGECSAYVSSTDYR
SHAPVSADALNGISKLIGGSAKCNVRDMGGFTENLPTPFNVRISMPDVIA
LMRQSWTYERFCKTKCGSMTIVVLRSQNSKAKLRVAWDNSGSPDCCKAKV
YTVEEWKKTPFAGKTTTMPEKVADVDMALDRTLVFE*
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mRNA from alignment at M-pyrifera_M_contig8186:1508..3175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8186.19155.1 ID=mRNA_M-pyrifera_M_contig8186.19155.1|Name=mRNA_M-pyrifera_M_contig8186.19155.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at M-pyrifera_M_contig8186:1508..3175- (Macrocystis pyrifera P11B4 male)
AAAGCGGTGAAATCGGGCCAGGCTATGGTCGTGTGGGCCGGAGGAGAAGC
CGCCGCAACTGGCGTTTCCACAGCTCTCGTTGCTGTCGGAGTATCGTCCG
TCGTTGCTCCGGTGGTGGCAGTCATCGTATTGGTCGGCCACGTCATTATT
AAAGGAACCGCGCTCGCCGTAAAGAAGAGGCTTCAGGTTGGTGGTAGCAT
TCAACAAAAAAAATACAACCACCAACAACAGTGTTATAAATTTGGAGATT
TACTGTAGTTCTATAAATACTCATGAAACAATCACGGAAGCCGTGGTTGT
TCGATAGTTTTATCTTTTTTTAGACTTATGCCACGGTTGTTGACGTGTTG
CCCTTTGTTTTTGGCTCAAGACTTTCTGACCGGTTGAGCTCCTCAAGTGA
GTAACCATAAATGTAGATCAGTTAGTATGCCACTTTTACTGTTGTATTGT
TTTCGGAGTGGGGCATAGAAATGTTGGTCGGGTTGCGCGAACAAACTTGT
TGGAAGTCATGTCCAGGATGAGGTATTGAGCTCCTCATGTGAGGACATTT
TAAAATAAGGCAGCGTCCCTACCGTGCCATTGGTATAGGTTTGAGCAGAC
AGTGACTATTCTGAACTCCCTACAACTGATGATTATATGTGTTTTAGCGC
AAAAAGCAATGCTCGGGTTTTGATATGTCTATACTTTAGCGCCATCCTAA
TATATATATATATAGTTCTCTTGGTATAATACACTAAACGCCACGCACAT
CAAATAGTCAAACAGCCATGACTAATGAAATATCGAGTCTTCAGTCTCAG
TGGTTGATTAATCCAACTCGACTTTATGTATCAATCTCAATCTCAACCTC
AGTCAACCATTCATTAATCTCAACGATCACTCAACAGGGCTAGGTCTCAT
GCACACGTTTCGATGGGTTTCCGTTGGAACATGAGGCGTTTTATTGGGAC
GTACGTACGCACATTCCCAATATCCTGGTATCCTGGCACCTCCCGCAGCC
AGGAGAGATACACTACCAGGACCAGTGTACTACAGTAGATACTGGTCCAG
TACCGAACCCTATATCGCAATCCATCAACCTCAACCCCGTTTTTTTGCTG
ATTATCAACACGATTTCAGGTCCGCACCGAGCAAAAAGCGCACTTTGAAG
ACTTGAGTCTCACGGAGGCTCGAACGTCGGACCACTTTACCATCTTCATT
CACGGCACAAGAGCACCCGGCGAGTGCAGCGCGTACGTGTCATCGACGGA
CTACCGCTCCCACGCTCCGGTCAGCGCGGACGCACTCAACGGCATCTCCA
AGCTAATCGGCGGAAGCGCCAAGTGCAACGTGCGGGATATGGGTGGCTTC
ACCGAGAATCTCCCAACCCCTTTCAACGTGCGCATCAGCATGCCGGACGT
AATCGCGCTCATGAGGCAGTCGTGGACGTACGAGAGATTCTGTAAAACGA
AGTGTGGAAGTATGACCATCGTCGTGCTCCGCTCGCAGAATAGCAAGGCG
AAGCTTCGCGTGGCGTGGGATAATTCTGGGAGCCCAGACTGCTGTAAAGC
TAAGGTGTACACCGTTGAAGAATGGAAGAAGACGCCGTTCGCCGGAAAGA
CGACGACTATGCCCGAGAAGGTCGCTGACGTGGACATGGCTCTCGATAGG
ACCCTCGTCTTCGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8186:1508..3175-

>mRNA_M-pyrifera_M_contig8186.19155.1 ID=mRNA_M-pyrifera_M_contig8186.19155.1|Name=mRNA_M-pyrifera_M_contig8186.19155.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1422bp|location=Sequence derived from alignment at M-pyrifera_M_contig8186:1508..3175- (Macrocystis pyrifera P11B4 male)
ATGGTCGTGTGGGCCGGAGGAGAAGCCGCCGCAACTGGCGTTTCCACAGC
TCTCGTTGCTGTCGGAGTATCGTCCGTCGTTGCTCCGGTGGTGGCAGTCA
TCGTATTGGTCGGCCACGTCATTATTAAAGGAACCGCGCTCGCCGTAAAG
AAGAGGCTTCAGATGGTCGTGTGGGCCGGAGGAGAAGCCGCCGCAACTGG
CGTTTCCACAGCTCTCGTTGCTGTCGGAGTATCGTCCGTCGTTGCTCCGG
TGGTGGCAGTCATCGTATTGGTCGGCCACGTCATTATTAAAGGAACCGCG
CTCGCCGTAAAGAAGAGGCTTCAGGTCCGCACCGAGCAAAAAGCGCACTT
TGAAGACTTGAGTCTCACGGAGGCTCGAACGTCGGACCACTTTACCATCT
TCATTCACGGCACAAGAGCACCCGGCGAGTGCAGCGCGTACGTGTCATCG
ACGGACTACCGCTCCCACGCTCCGGTCAGCGCGGACGCACTCAACGGCAT
CTCCAAGCTAATCGGCGGAAGCGCCAAGTGCAACGTGCGGGATATGGGTG
GCTTCACCGAGAATCTCCCAACCCCTTTCAACGTGCGCATCAGCATGCCG
GACGTAATCGCGCTCATGAGGCAGTCGTGGACGTACGAGAGATTCTGTAA
AACGAAGTGTGGAAGTATGACCATCGTCGTGCTCCGCTCGCAGAATAGCA
AGGCGAAGCTTCGCGTGGCGTGGGATAATTCTGGGAGCCCAGACTGCTGT
AAAGCTAAGGTGTACACCGTTGAAGAATGGAAGAAGACGCCGTTCGCCGG
AAAGACGACGACTATGCCCGAGAAGGTCGCTGACGTGGACATGGCTCTCG
ATAGGACCCTCGTCTTCGAATAGGTCCGCACCGAGCAAAAAGCGCACTTT
GAAGACTTGAGTCTCACGGAGGCTCGAACGTCGGACCACTTTACCATCTT
CATTCACGGCACAAGAGCACCCGGCGAGTGCAGCGCGTACGTGTCATCGA
CGGACTACCGCTCCCACGCTCCGGTCAGCGCGGACGCACTCAACGGCATC
TCCAAGCTAATCGGCGGAAGCGCCAAGTGCAACGTGCGGGATATGGGTGG
CTTCACCGAGAATCTCCCAACCCCTTTCAACGTGCGCATCAGCATGCCGG
ACGTAATCGCGCTCATGAGGCAGTCGTGGACGTACGAGAGATTCTGTAAA
ACGAAGTGTGGAAGTATGACCATCGTCGTGCTCCGCTCGCAGAATAGCAA
GGCGAAGCTTCGCGTGGCGTGGGATAATTCTGGGAGCCCAGACTGCTGTA
AAGCTAAGGTGTACACCGTTGAAGAATGGAAGAAGACGCCGTTCGCCGGA
AAGACGACGACTATGCCCGAGAAGGTCGCTGACGTGGACATGGCTCTCGA
TAGGACCCTCGTCTTCGAATAG
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