mRNA_M-pyrifera_M_contig81849.19151.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81849.19151.1
Unique NamemRNA_M-pyrifera_M_contig81849.19151.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-17
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEELTM+YGAIT+CETEY KAVCLCGSHLC+QSFMTFTG     ++L
Sbjct: 1037 GEELTMNYGAITSCETEYGKAVCLCGSHLCQQSFMTFTGMDSYSKIL 1083
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.310e-16
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEELTM+YGAIT+CETEY KAVCLCGS+LC+QSFMTFTG     ++L
Sbjct: 1070 GEELTMNYGAITSCETEYGKAVCLCGSNLCQQSFMTFTGMDSYSKIL 1116
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A4D9CUJ3_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUJ3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-10
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEELTMDY + T  E EY  AVCLCGSH+CR SF+ F G    H+VL
Sbjct:  881 GEELTMDYCSFTHSEEEYLAAVCLCGSHICRNSFLHFAGYDMFHKVL 927
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A836CJD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.470e-10
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEELT+DYG++TT E E+ ++VCLCGS  CR SF+TF G      VL
Sbjct:  634 GEELTIDYGSVTTSEVEWKESVCLCGSLNCRGSFLTFVGAKAFQAVL 680
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A150G6L8_GONPE (SET domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G6L8_GONPE)

HSP 1 Score: 58.5 bits (140), Expect = 9.120e-9
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEELT DY ++T  E EY +A+CLCGS LCR S++ ++G++   +V+
Sbjct:  723 GEELTFDYSSVTESEKEYREAICLCGSRLCRGSYLYYSGSTAFTQVM 769
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A5J4XMC1_9CHLO (Putative histone-lysine N-methyltransferase ATXR3-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XMC1_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 9.120e-9
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            G+ELT DY ++T  E E+  A+CLCG+HLCR SF+ F+G+    +++
Sbjct:  812 GQELTFDYASVTESEREFRAAICLCGTHLCRGSFLYFSGSKAFMQIM 858
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A5P1EIZ2_ASPOF (SET domain-containing protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EIZ2_ASPOF)

HSP 1 Score: 57.8 bits (138), Expect = 1.710e-8
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEE+T DY ++T  + EY  +VCLCGS +CR S++  TG    H+VL
Sbjct: 1928 GEEVTFDYNSVTESKEEYEASVCLCGSQICRGSYLNLTGEDAFHKVL 1974
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A6J0MDN9_RAPSA (histone-lysine N-methyltransferase ATXR3 n=14 Tax=Brassiceae TaxID=981071 RepID=A0A6J0MDN9_RAPSA)

HSP 1 Score: 57.8 bits (138), Expect = 1.710e-8
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEE+T DY ++T  + EY  +VCLCGSH+CR S++  TG     +VL
Sbjct: 1956 GEEITFDYNSVTESKEEYEASVCLCGSHVCRGSYLNLTGEGAFQKVL 2002
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A6J1C2D3_MOMCH (histone-lysine N-methyltransferase ATXR3 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1C2D3_MOMCH)

HSP 1 Score: 57.8 bits (138), Expect = 1.710e-8
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEE+T DY ++T  + EY  +VCLCGSH+CR S++  TG     +VL
Sbjct: 1972 GEEITFDYNSVTESKEEYEASVCLCGSHVCRGSYLNLTGDGAFQKVL 2018
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BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Match: A0A7I8LG81_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LG81_SPIIN)

HSP 1 Score: 57.4 bits (137), Expect = 2.330e-8
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 GEELTMDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL 141
            GEE+T DY ++T  + EY  +VCLCGS +CR S++  TG    H VL
Sbjct: 1908 GEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEDAFHNVL 1954
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81849.19151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP4_9PHAE2.600e-1776.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRP6_ECTSI2.310e-1674.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CUJ3_9STRA1.560e-1061.70SET domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A836CJD9_9STRA7.470e-1057.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A150G6L8_GONPE9.120e-948.94SET domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A5J4XMC1_9CHLO9.120e-946.81Putative histone-lysine N-methyltransferase ATXR3-... [more]
A0A5P1EIZ2_ASPOF1.710e-848.94SET domain-containing protein n=3 Tax=Asparagus of... [more]
A0A6J0MDN9_RAPSA1.710e-848.94histone-lysine N-methyltransferase ATXR3 n=14 Tax=... [more]
A0A6J1C2D3_MOMCH1.710e-848.94histone-lysine N-methyltransferase ATXR3 n=1 Tax=M... [more]
A0A7I8LG81_SPIIN2.330e-848.94Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81849contigM-pyrifera_M_contig81849:191..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D8LRP6
KEGG koko:K03231,ko:K22156
KEGG Pathwayko03013,ko05134,map03013,map05134
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03016,ko03019,ko03036,ko04131,ko04147
Exons1
Model size141
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.7325008-UTR-M-pyrifera_M_contig81849:190..2051622816725.7325008-UTR-M-pyrifera_M_contig81849:190..205Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81849 191..205 +
1692278142.6184664-UTR-M-pyrifera_M_contig81849:190..2051692278142.6184664-UTR-M-pyrifera_M_contig81849:190..205Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81849 191..205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.743381-CDS-M-pyrifera_M_contig81849:205..3311622816725.743381-CDS-M-pyrifera_M_contig81849:205..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81849 206..331 +
1692278142.6300435-CDS-M-pyrifera_M_contig81849:205..3311692278142.6300435-CDS-M-pyrifera_M_contig81849:205..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81849 206..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81849.19151.1prot_M-pyrifera_M_contig81849.19151.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81849 206..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81849.19151.1

>prot_M-pyrifera_M_contig81849.19151.1 ID=prot_M-pyrifera_M_contig81849.19151.1|Name=mRNA_M-pyrifera_M_contig81849.19151.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MDYGAITTCETEYNKAVCLCGSHLCRQSFMTFTGTSDLHEVL
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mRNA from alignment at M-pyrifera_M_contig81849:191..331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81849.19151.1 ID=mRNA_M-pyrifera_M_contig81849.19151.1|Name=mRNA_M-pyrifera_M_contig81849.19151.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig81849:191..331+ (Macrocystis pyrifera P11B4 male)
GGAGAGGAACTCACTATGGACTACGGCGCGATTACGACCTGCGAGACGGA
GTACAACAAGGCCGTGTGCCTGTGCGGGTCCCACTTGTGCCGTCAGAGCT
TTATGACCTTCACCGGAACCAGCGACCTCCACGAAGTGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81849:191..331+

>mRNA_M-pyrifera_M_contig81849.19151.1 ID=mRNA_M-pyrifera_M_contig81849.19151.1|Name=mRNA_M-pyrifera_M_contig81849.19151.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig81849:191..331+ (Macrocystis pyrifera P11B4 male)
ATGGACTACGGCGCGATTACGACCTGCGAGACGGAGTACAACAAGGCCGT
GTGCCTGTGCGGGTCCCACTTGTGCCGTCAGAGCTTTATGACCTTCACCG
GAACCAGCGACCTCCACGAAGTGCTTATGGACTACGGCGCGATTACGACC
TGCGAGACGGAGTACAACAAGGCCGTGTGCCTGTGCGGGTCCCACTTGTG
CCGTCAGAGCTTTATGACCTTCACCGGAACCAGCGACCTCCACGAAGTGC
TT
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