mRNA_M-pyrifera_M_contig81719.19135.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81719.19135.1
Unique NamemRNA_M-pyrifera_M_contig81719.19135.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: A0A1Y1W2T4_9FUNG (WD40 repeat-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W2T4_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 8.980e-9
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 AVCGDEQDVRVVSLVDSTVVFRLKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWD 165
            AV  D++ VR+VSL+D +++  L+GHR  V S+ FSPD   L S G D +LR WD
Sbjct:  119 AVAADDEVVRIVSLLDMSLLHSLQGHRAPVTSVSFSPDSVFLASVGCDGSLRVWD 173          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: B7K4A8_RIPO1 (WD-40 repeat protein n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=B7K4A8_RIPO1)

HSP 1 Score: 56.6 bits (135), Expect = 7.790e-8
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   10 GDEQDVRVVSLVDSTVVFRLKGHRGAVRSLEFSPDGNVLVSTGA-DKTLRFWD 165
             D++++RV+SLVD + V  LKGH G +  L  SPD  +LVS  A D+T+R WD
Sbjct:  147 ADDENIRVLSLVDGSKVNLLKGHSGKISDLALSPDDKILVSVSASDRTIRIWD 199          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: A0A316G352_9ACTN (WD40 repeat protein n=2 Tax=Actinoplanes xinjiangensis TaxID=512350 RepID=A0A316G352_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 3.870e-7
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 AVCGDEQDVRVVSLVDSTVVFRLKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWDT 168
            A CG++  VR+   +  +++  L GHRG V   +FSP G  +V+ GAD+TLR W+T
Sbjct:  739 ATCGEDGVVRLWDPLTRSLIKALAGHRGPVTFAQFSPQGRFMVTIGADRTLRLWNT 794          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: A0A0K9P7I3_ZOSMR (DDB1- and CUL4-associated factor 13 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P7I3_ZOSMR)

HSP 1 Score: 53.5 bits (127), Expect = 9.700e-7
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   22 DVRVVSLVDSTVVFRLKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWD 165
            D+R+  +     V +  GH+GAVR L  SPDGN L+S G D TLR W+
Sbjct:   90 DIRLWDIATRKTVCQFPGHKGAVRGLTISPDGNTLISCGTDCTLRLWN 137          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: UPI001E6457E2 (WD40 repeat domain-containing protein n=1 Tax=Nostoc sp. CHAB 5834 TaxID=2780403 RepID=UPI001E6457E2)

HSP 1 Score: 53.5 bits (127), Expect = 9.780e-7
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   67 LKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWDTQG 174
            L+GH   VRS+ FSPDG ++VS  ADKTLR WD QG
Sbjct:   33 LRGHDSRVRSMAFSPDGKMIVSGSADKTLRLWDLQG 68          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: UPI001FEADB6B (hypothetical protein n=1 Tax=Leptothoe spongobia TaxID=2651728 RepID=UPI001FEADB6B)

HSP 1 Score: 52.8 bits (125), Expect = 1.100e-6
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   64 RLKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWDTQG 174
            +L+GHRG+VRS+ FSP G+ +VS  AD TLR WD +G
Sbjct:   35 KLEGHRGSVRSVAFSPQGDRIVSGSADNTLRLWDREG 71          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: UPI00034667BF (caspase family protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00034667BF)

HSP 1 Score: 53.1 bits (126), Expect = 1.350e-6
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   67 LKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWDTQG 174
            LKGH+G+VRS+ FSPDG ++VS G D T+R WD  G
Sbjct:  797 LKGHKGSVRSVAFSPDGKMIVSGGMDGTVRLWDRAG 832          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: A0A1F9U9W6_9BACT (Uncharacterized protein n=1 Tax=Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 TaxID=1797947 RepID=A0A1F9U9W6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.730e-6
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:   64 RLKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWDTQGLAE 183
            +L GHRGAV S  FSPDG  LVS GADKT++ WD    A+
Sbjct:  273 KLSGHRGAVLSAAFSPDGRWLVSGGADKTVKVWDAGSFAK 312          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: A0A1G2ZC46_9BACT (Thioredoxin domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2ZC46_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.840e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   49 STVVFRLKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWD 165
            +TV   L GH GAVR + FSPDG  LVS GAD+T+R W+
Sbjct:   53 ATVFAELPGHTGAVRFVAFSPDGETLVSAGADRTIRLWN 91          
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Match: A0A8J5XLR4_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLR4_DIALT)

HSP 1 Score: 52.0 bits (123), Expect = 3.380e-6
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   67 LKGHRGAVRSLEFSPDGNVLVSTGADKTLRFWDT 168
            LKGH+ AV +++FSPDGN+L ST AD+T+R W T
Sbjct:   15 LKGHKKAVSAVKFSPDGNLLASTSADRTIRVWST 48          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81719.19135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1W2T4_9FUNG8.980e-949.09WD40 repeat-like protein n=1 Tax=Linderina pennisp... [more]
B7K4A8_RIPO17.790e-849.06WD-40 repeat protein n=1 Tax=Rippkaea orientalis (... [more]
A0A316G352_9ACTN3.870e-742.86WD40 repeat protein n=2 Tax=Actinoplanes xinjiange... [more]
A0A0K9P7I3_ZOSMR9.700e-747.92DDB1- and CUL4-associated factor 13 n=1 Tax=Zoster... [more]
UPI001E6457E29.780e-763.89WD40 repeat domain-containing protein n=1 Tax=Nost... [more]
UPI001FEADB6B1.100e-659.46hypothetical protein n=1 Tax=Leptothoe spongobia T... [more]
UPI00034667BF1.350e-661.11caspase family protein n=1 Tax=Oscillatoria sp. PC... [more]
A0A1F9U9W6_9BACT1.730e-660.00Uncharacterized protein n=1 Tax=Elusimicrobia bact... [more]
A0A1G2ZC46_9BACT1.840e-658.97Thioredoxin domain-containing protein n=1 Tax=Plan... [more]
A0A8J5XLR4_DIALT3.380e-661.76Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81719contigM-pyrifera_M_contig81719:86..268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.923702-CDS-M-pyrifera_M_contig81719:85..2681622816724.923702-CDS-M-pyrifera_M_contig81719:85..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81719 86..268 +
1692278142.1099815-CDS-M-pyrifera_M_contig81719:85..2681692278142.1099815-CDS-M-pyrifera_M_contig81719:85..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81719 86..268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81719.19135.1prot_M-pyrifera_M_contig81719.19135.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81719 86..268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81719.19135.1

>prot_M-pyrifera_M_contig81719.19135.1 ID=prot_M-pyrifera_M_contig81719.19135.1|Name=mRNA_M-pyrifera_M_contig81719.19135.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
AVCGDEQDVRVVSLVDSTVVFRLKGHRGAVRSLEFSPDGNVLVSTGADKT
LRFWDTQGLAE
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mRNA from alignment at M-pyrifera_M_contig81719:86..268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81719.19135.1 ID=mRNA_M-pyrifera_M_contig81719.19135.1|Name=mRNA_M-pyrifera_M_contig81719.19135.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig81719:86..268+ (Macrocystis pyrifera P11B4 male)
GCCGTGTGCGGAGATGAACAGGATGTCCGCGTCGTGTCGCTCGTGGATTC CACAGTCGTGTTTCGCCTCAAAGGACATCGTGGGGCGGTGCGCTCCCTCG AATTCAGCCCAGACGGAAACGTGCTCGTGTCCACGGGGGCAGACAAGACA CTCCGGTTTTGGGACACGCAAGGATTGGCGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81719:86..268+

>mRNA_M-pyrifera_M_contig81719.19135.1 ID=mRNA_M-pyrifera_M_contig81719.19135.1|Name=mRNA_M-pyrifera_M_contig81719.19135.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig81719:86..268+ (Macrocystis pyrifera P11B4 male)
GCCGTGTGCGGAGATGAACAGGATGTCCGCGTCGTGTCGCTCGTGGATTC
CACAGTCGTGTTTCGCCTCAAAGGACATCGTGGGGCGGTGCGCTCCCTCG
AATTCAGCCCAGACGGAAACGTGCTCGTGTCCACGGGGGCAGACAAGACA
CTCCGGTTTTGGGACACGCAAGGATTGGCGGAAGCCGTGTGCGGAGATGA
ACAGGATGTCCGCGTCGTGTCGCTCGTGGATTCCACAGTCGTGTTTCGCC
TCAAAGGACATCGTGGGGCGGTGCGCTCCCTCGAATTCAGCCCAGACGGA
AACGTGCTCGTGTCCACGGGGGCAGACAAGACACTCCGGTTTTGGGACAC
GCAAGGATTGGCGGAA
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