mRNA_M-pyrifera_M_contig81712.19132.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81712.19132.1
Unique NamemRNA_M-pyrifera_M_contig81712.19132.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81712.19132.1 vs. uniprot
Match: A0A182JSG3_9DIPT (Uncharacterized protein n=1 Tax=Anopheles christyi TaxID=43041 RepID=A0A182JSG3_9DIPT)

HSP 1 Score: 54.3 bits (129), Expect = 9.840e-5
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  448 LLSAISSGDADGVAKLIEAGSNVNSRNGTNDAALPYLAQQYPSRRLSQQAAEKIFKLLLTSGADVNATDADGRTALHYAVRHKELELASWLV 723
            +LS +   + D + +LI+ G N+N R+     +L  +A  + S +    + + I +LLL  GADVNA D DG TALHYA    +L+LA  L+
Sbjct:  769 MLSYMEESNLDVIERLIQKGVNLNVRDRWGRNSLLAIAFGFRSAQWYGHSLKSI-ELLLDHGADVNAQDDDGNTALHYAFEEMQLDLAELLM 859
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81712.19132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A182JSG3_9DIPT9.840e-538.04Uncharacterized protein n=1 Tax=Anopheles christyi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81712contigM-pyrifera_M_contig81712:91..864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size774
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.8120222-CDS-M-pyrifera_M_contig81712:90..8641622816724.8120222-CDS-M-pyrifera_M_contig81712:90..864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81712 91..864 -
1692278142.0465615-CDS-M-pyrifera_M_contig81712:90..8641692278142.0465615-CDS-M-pyrifera_M_contig81712:90..864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81712 91..864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81712.19132.1prot_M-pyrifera_M_contig81712.19132.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81712 91..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81712.19132.1

>prot_M-pyrifera_M_contig81712.19132.1 ID=prot_M-pyrifera_M_contig81712.19132.1|Name=mRNA_M-pyrifera_M_contig81712.19132.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=258bp
QRKGKLNLRNNKGDTALHRALTRKNRLHYVRTLVDNGAAIDIANNNGFTP
MHLAATLGDIRVTEFLLERGAGLNVATPSGLTPIAVAAKSNRWKVVERLL
QLGADPNVPYTTAQTLALYLVQNEEIGLSELVKQQGFQPDAPVAGAKWPL
LSAISSGDADGVAKLIEAGSNVNSRNGTNDAALPYLAQQYPSRRLSQQAA
EKIFKLLLTSGADVNATDADGRTALHYAVRHKELELASWLVDAGANLNTA
DTQGSTAL
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mRNA from alignment at M-pyrifera_M_contig81712:91..864-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81712.19132.1 ID=mRNA_M-pyrifera_M_contig81712.19132.1|Name=mRNA_M-pyrifera_M_contig81712.19132.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig81712:91..864- (Macrocystis pyrifera P11B4 male)
CAGCGTAAAGGCAAGCTGAATCTTCGCAATAATAAGGGAGACACTGCACT
GCATCGCGCATTGACACGTAAGAACCGCCTGCACTACGTGCGCACGCTGG
TCGACAACGGAGCCGCCATAGATATCGCCAACAATAACGGCTTCACCCCA
ATGCACCTTGCCGCAACGCTCGGCGACATCCGCGTCACCGAGTTTCTGCT
CGAGCGAGGTGCCGGCTTGAATGTCGCGACGCCGAGCGGATTAACCCCTA
TTGCGGTAGCGGCGAAAAGCAACCGCTGGAAAGTCGTCGAACGTTTATTA
CAACTTGGCGCCGACCCGAACGTACCGTACACAACGGCTCAGACATTGGC
TTTATACCTTGTGCAGAACGAGGAGATCGGGCTATCCGAACTCGTAAAAC
AGCAGGGTTTTCAACCCGACGCCCCTGTGGCGGGCGCGAAGTGGCCGTTG
TTGTCAGCAATTTCCTCCGGTGATGCGGACGGTGTGGCAAAGCTCATCGA
AGCCGGCTCGAATGTGAATTCGCGCAACGGAACAAACGATGCGGCACTGC
CGTACCTGGCGCAGCAATACCCTTCGCGGCGACTCTCGCAGCAAGCAGCG
GAGAAAATATTCAAACTGCTTTTGACGTCGGGCGCCGACGTCAATGCGAC
GGACGCTGATGGTCGAACCGCGCTCCATTATGCCGTAAGACATAAGGAAC
TCGAACTGGCGTCGTGGCTGGTCGATGCGGGCGCGAACCTGAATACCGCC
GATACACAGGGTAGTACGGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81712:91..864-

>mRNA_M-pyrifera_M_contig81712.19132.1 ID=mRNA_M-pyrifera_M_contig81712.19132.1|Name=mRNA_M-pyrifera_M_contig81712.19132.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1548bp|location=Sequence derived from alignment at M-pyrifera_M_contig81712:91..864- (Macrocystis pyrifera P11B4 male)
CAGCGTAAAGGCAAGCTGAATCTTCGCAATAATAAGGGAGACACTGCACT
GCATCGCGCATTGACACGTAAGAACCGCCTGCACTACGTGCGCACGCTGG
TCGACAACGGAGCCGCCATAGATATCGCCAACAATAACGGCTTCACCCCA
ATGCACCTTGCCGCAACGCTCGGCGACATCCGCGTCACCGAGTTTCTGCT
CGAGCGAGGTGCCGGCTTGAATGTCGCGACGCCGAGCGGATTAACCCCTA
TTGCGGTAGCGGCGAAAAGCAACCGCTGGAAAGTCGTCGAACGTTTATTA
CAACTTGGCGCCGACCCGAACGTACCGTACACAACGGCTCAGACATTGGC
TTTATACCTTGTGCAGAACGAGGAGATCGGGCTATCCGAACTCGTAAAAC
AGCAGGGTTTTCAACCCGACGCCCCTGTGGCGGGCGCGAAGTGGCCGTTG
TTGTCAGCAATTTCCTCCGGTGATGCGGACGGTGTGGCAAAGCTCATCGA
AGCCGGCTCGAATGTGAATTCGCGCAACGGAACAAACGATGCGGCACTGC
CGTACCTGGCGCAGCAATACCCTTCGCGGCGACTCTCGCAGCAAGCAGCG
GAGAAAATATTCAAACTGCTTTTGACGTCGGGCGCCGACGTCAATGCGAC
GGACGCTGATGGTCGAACCGCGCTCCATTATGCCGTAAGACATAAGGAAC
TCGAACTGGCGTCGTGGCTGGTCGATGCGGGCGCGAACCTGAATACCGCC
GATACACAGGGTAGTACGGCGCTGCAGCGTAAAGGCAAGCTGAATCTTCG
CAATAATAAGGGAGACACTGCACTGCATCGCGCATTGACACGTAAGAACC
GCCTGCACTACGTGCGCACGCTGGTCGACAACGGAGCCGCCATAGATATC
GCCAACAATAACGGCTTCACCCCAATGCACCTTGCCGCAACGCTCGGCGA
CATCCGCGTCACCGAGTTTCTGCTCGAGCGAGGTGCCGGCTTGAATGTCG
CGACGCCGAGCGGATTAACCCCTATTGCGGTAGCGGCGAAAAGCAACCGC
TGGAAAGTCGTCGAACGTTTATTACAACTTGGCGCCGACCCGAACGTACC
GTACACAACGGCTCAGACATTGGCTTTATACCTTGTGCAGAACGAGGAGA
TCGGGCTATCCGAACTCGTAAAACAGCAGGGTTTTCAACCCGACGCCCCT
GTGGCGGGCGCGAAGTGGCCGTTGTTGTCAGCAATTTCCTCCGGTGATGC
GGACGGTGTGGCAAAGCTCATCGAAGCCGGCTCGAATGTGAATTCGCGCA
ACGGAACAAACGATGCGGCACTGCCGTACCTGGCGCAGCAATACCCTTCG
CGGCGACTCTCGCAGCAAGCAGCGGAGAAAATATTCAAACTGCTTTTGAC
GTCGGGCGCCGACGTCAATGCGACGGACGCTGATGGTCGAACCGCGCTCC
ATTATGCCGTAAGACATAAGGAACTCGAACTGGCGTCGTGGCTGGTCGAT
GCGGGCGCGAACCTGAATACCGCCGATACACAGGGTAGTACGGCGCTG
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