mRNA_M-pyrifera_M_contig81711.19131.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81711.19131.1
Unique NamemRNA_M-pyrifera_M_contig81711.19131.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81711.19131.1 vs. uniprot
Match: A0A6I3MRB7_9FLAO (Tetratricopeptide repeat protein n=1 Tax=Flavobacterium sp. MC2016-06 TaxID=2676308 RepID=A0A6I3MRB7_9FLAO)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-13
Identity = 85/307 (27.69%), Postives = 141/307 (45.93%), Query Frame = 1 
Query:   16 DSAAILAEVILVKSKEAGYTLGQAKGEFATGHVAYLKGKREYAVPHFLKALDIYR-PLKGNDPLIDQANICITLGKIYRQNHMLDM-------AIEFYEQGIEYALECNNEEALRKLLYNQSVAYRRNGDIDKALDAVTQSMNFILEGDTAIKQR----TYNQFGVIYYDLEEYDQAREWYNKMIQLDSAKPSPKYYRAQAYHNIAISYQLQSNFAMAWVYYKLALKEKELLGNTEKLFITLRDMAELALLENRKDTALNYAHKALVLIEQVPKTPENYNLYLTLSECVQES--NPVKALFYAKQYI 894
            DS    AE  +  S++ GY  G A G    G+ + + G    A+ +F KA   ++  LK N    +Q  I   L + Y  + ++         +++ YEQ ++   E N++ ++ K+L N  + Y+      KAL  +  +    L    AIK++    T    GVIY++L EY  A ++Y K  +   AK + K   A   + +   Y  Q N  +A  YY+ +L   E + N       L ++A L   E +   AL YA+K+L   +++    + +N    LSE + ES  NP  AL + K Y+
Sbjct:   60 DSTLFYAEKAIAASQKKGYNFGLATGYLNEGNASIILGNYPEALKYFKKAQTEFKIALKDNS---NQKQIKNGLARSYASSGVVHSEQSDYTSSLQNYEQALKLYQETNDKLSISKILNNIGILYKSQRIYPKALYYLKGAYKIQL----AIKEQNAPITLTNIGVIYFELGEYQNAIDYYEK-AKKGFAKNNNKRGFALLNNYLGEYYTKQKNPDLALKYYQQSLDLYEGIQNKFGASYALYNIALLLQEEQKYKEALFYANKSLAYAQEIGVLDQTFNTEKLLSE-LHESLHNPEAALAHYKNYV 357
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BLAST of mRNA_M-pyrifera_M_contig81711.19131.1 vs. uniprot
Match: A0A0J7IUP2_9FLAO (Uncharacterized protein n=1 Tax=Chryseobacterium sp. FH2 TaxID=1674291 RepID=A0A0J7IUP2_9FLAO)

HSP 1 Score: 64.3 bits (155), Expect = 7.580e-8
Identity = 53/218 (24.31%), Postives = 100/218 (45.87%), Query Frame = 1 
Query:  247 RQNHMLDMAIEFYEQGIEYALECNNEEALRKLLYNQSVAYRRNGDIDKALDAVTQSMNFILEGDTAIKQR----TYNQFGVIYYDLEEYDQAREWYNKMIQLDSAKPSPKYYRAQAYHNIAISYQLQSNFAMAWVYYKLALKEKELLGNTEKLFITLRDMAELALLENRKDTALNYAHKALVLIEQVPKTPENYNLYLTLSECVQESNPVKALFYAKQ 888
            R  ++ D A  +Y    +  ++ N+     + L N ++   + GD   +++   ++  F+     +I  R    +YN  G+ YY +  YD+A + Y   I+  S     KY     Y+N+A+S   +++   A  Y K A+  K+ +         L ++A+   +E++    LN  +KAL + +    T    + Y TLSE  +  +  KA FYA++
Sbjct:   40 RNKNITDSAFYYYTLAKDEYIKNNDSLRAGQCLVNMAIIETKKGDFYGSIETSIEANKFLSNIKDSIVSRDLAASYNNMGIAYYYMYNYDEAIKCYKDAIRY-SINNKTKY---TYYNNLAVSLLKENDSRQALEYLKHAILIKDSIEYAR----ALNNLAKAKFMEDKSYNPLNEFYKALEIRQNNKDTEGLNSSYSTLSEYFKNKDKSKAFFYARK 249
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BLAST of mRNA_M-pyrifera_M_contig81711.19131.1 vs. uniprot
Match: A0A6L4ZDE2_9BACT (ATP-binding domain-containing n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=A0A6L4ZDE2_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.680e-6
Identity = 48/211 (22.75%), Postives = 91/211 (43.13%), Query Frame = 1 
Query:  262 LDMAIEFYEQGIEYALECNNEEALRKLLYNQSVAYRRNGDIDKALDAVTQSMNFILEGD-TAIKQRTYNQFGVIYYDLEEYDQAREWYNKMIQLDSAKPSPKYYRAQAYHNIAISYQLQSNFAMAWVYYKLALKEKELLGNTEKLFITLRDMAELALLENRKDTALNYAHKAL---VLIEQVPKTPENYNLYLTLSECVQESNPVKALFYA 882
            LD ++++ +Q +  A + N  +     L N    YR +G++ KA+D   ++M          I    Y  FGVIY+DL++Y +A  +Y + ++    K +       +Y N+  +Y   +    +  + +LA          E+L +  R    + +  N    AL+Y  K +     ++       NYN   +L + + E  P   ++YA
Sbjct:   57 LDSSLKYSQQALALARKINFIKGEASALINIGFGYRESGELPKAIDFALKAMTIAQNHQFREIMGTCYTLFGVIYFDLQDYKKAINYYQQALKCYKKKSNI----ISSYSNLGSAYIKNNQLDSSKYFIQLAYNNSIEANYLERLSVIFRVYGLIEIQSNNNQLALDYFKKGVQEAFKLKNYRDVASNYNDIASLFQKMNE--PDSCIYYA 261
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BLAST of mRNA_M-pyrifera_M_contig81711.19131.1 vs. uniprot
Match: A0A7Y6YIG1_9BACT (Response regulator n=1 Tax=Flavobacteriia bacterium TaxID=2044941 RepID=A0A7Y6YIG1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 3.900e-5
Identity = 53/210 (25.24%), Postives = 96/210 (45.71%), Query Frame = 1 
Query:  271 AIEFYEQGIEYALECNNEEALRKLLYNQSVAYRRNGDIDKALDAVTQSMNFILE-GDTAIKQRTYNQFGVIYYDLEEYDQAREWYNKMIQLDSAKPSPKYYRAQAYHNIAISYQLQSNFAMAWVYYKLALKEKELLGNTEKLFITLRDMAELALLENRKDTALNYAHKAL-----VLIEQVPKTPENYNLY-LTLSECVQESNPVKALFY 879
            AIE   + +E+A   NNE+A+  +  +    YR NG  + A++    +     E  +T          G I++D+E Y+ A E+Y K I ++S +   +   A AY+N+ +  + + N + A  YY  AL  ++  G  E +  + +    L       D++L Y  +AL     ++ +++      +NLY LT     +     KA+ Y
Sbjct:   67 AIEVAAELLEFAELKNNEKAVADMYNHIGNIYRGNGLDENAIENHLIATEIFGELNETGSYVYGLINIGNIFFDIEYYEDAEEYYKKAISVESDEFDLRAAHAVAYNNLGLVEEERGNKSTAKSYYVTALSLRKDFGEEELIIHSYQQFGALHSYFEEYDSSLTYYLEALNRTHHLIDDEIIVMERFWNLYQLTAESYFELGEYPKAMAY 276
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81711.19131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6I3MRB7_9FLAO1.910e-1327.69Tetratricopeptide repeat protein n=1 Tax=Flavobact... [more]
A0A0J7IUP2_9FLAO7.580e-824.31Uncharacterized protein n=1 Tax=Chryseobacterium s... [more]
A0A6L4ZDE2_9BACT2.680e-622.75ATP-binding domain-containing n=1 Tax=Prolixibacte... [more]
A0A7Y6YIG1_9BACT3.900e-525.24Response regulator n=1 Tax=Flavobacteriia bacteriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81711contigM-pyrifera_M_contig81711:12..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue2e-09
Seed eggNOG ortholog1506583.JQJY01000007_gene4089
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase
EggNOG OGs1HYQ1@117743,2NSA0@237,4NEPS@976,COG0457@1,COG0457@2,COG4585@1,COG4585@2
COG Functional cat.T
Best tax levelFlavobacterium
Best eggNOG OGNA|NA|NA
Exons1
Model size912
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.77928-CDS-M-pyrifera_M_contig81711:11..9231622816724.77928-CDS-M-pyrifera_M_contig81711:11..923Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81711 12..923 +
1692278142.0228736-CDS-M-pyrifera_M_contig81711:11..9231692278142.0228736-CDS-M-pyrifera_M_contig81711:11..923Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81711 12..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81711.19131.1prot_M-pyrifera_M_contig81711.19131.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81711 12..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81711.19131.1

>prot_M-pyrifera_M_contig81711.19131.1 ID=prot_M-pyrifera_M_contig81711.19131.1|Name=mRNA_M-pyrifera_M_contig81711.19131.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=304bp
YSTNLDSAAILAEVILVKSKEAGYTLGQAKGEFATGHVAYLKGKREYAVP
HFLKALDIYRPLKGNDPLIDQANICITLGKIYRQNHMLDMAIEFYEQGIE
YALECNNEEALRKLLYNQSVAYRRNGDIDKALDAVTQSMNFILEGDTAIK
QRTYNQFGVIYYDLEEYDQAREWYNKMIQLDSAKPSPKYYRAQAYHNIAI
SYQLQSNFAMAWVYYKLALKEKELLGNTEKLFITLRDMAELALLENRKDT
ALNYAHKALVLIEQVPKTPENYNLYLTLSECVQESNPVKALFYAKQYISE
TKAF
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mRNA from alignment at M-pyrifera_M_contig81711:12..923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81711.19131.1 ID=mRNA_M-pyrifera_M_contig81711.19131.1|Name=mRNA_M-pyrifera_M_contig81711.19131.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig81711:12..923+ (Macrocystis pyrifera P11B4 male)
TACAGTACTAATCTGGACAGTGCAGCCATACTTGCCGAGGTGATATTGGT
AAAATCAAAAGAAGCTGGCTATACTTTGGGTCAAGCCAAAGGTGAATTTG
CCACAGGACATGTTGCTTATCTAAAAGGAAAACGAGAATACGCTGTCCCT
CATTTTCTAAAGGCTCTTGACATTTATCGACCTTTAAAAGGTAACGATCC
GTTAATTGATCAAGCCAATATTTGTATCACCTTAGGTAAAATTTATCGTC
AGAACCATATGCTTGACATGGCAATAGAGTTTTATGAACAAGGGATTGAG
TATGCGCTAGAATGCAATAATGAAGAAGCTCTTAGAAAGTTACTTTACAA
TCAATCCGTCGCCTACCGAAGAAACGGTGATATTGACAAAGCTCTGGATG
CGGTAACGCAAAGCATGAATTTTATACTCGAAGGAGACACAGCAATCAAG
CAAAGAACTTACAATCAATTTGGTGTTATTTATTATGATTTGGAAGAATA
TGATCAAGCCAGAGAATGGTACAACAAAATGATTCAATTGGACTCAGCAA
AACCGTCACCCAAGTACTATCGTGCCCAGGCCTATCACAATATTGCAATA
TCCTACCAGCTACAAAGCAACTTTGCTATGGCATGGGTGTACTACAAGCT
AGCTTTAAAAGAAAAGGAACTATTAGGCAATACAGAAAAGCTCTTCATAA
CTTTACGCGACATGGCCGAGTTAGCACTTTTGGAAAATAGAAAAGATACT
GCTCTAAACTACGCTCATAAAGCATTAGTCTTGATTGAGCAAGTGCCTAA
AACGCCTGAGAATTACAATTTGTACCTCACCTTGTCTGAATGCGTGCAAG
AATCAAATCCTGTAAAAGCACTCTTTTATGCCAAACAATACATATCAGAA
ACCAAGGCTTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81711:12..923+

>mRNA_M-pyrifera_M_contig81711.19131.1 ID=mRNA_M-pyrifera_M_contig81711.19131.1|Name=mRNA_M-pyrifera_M_contig81711.19131.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1824bp|location=Sequence derived from alignment at M-pyrifera_M_contig81711:12..923+ (Macrocystis pyrifera P11B4 male)
TACAGTACTAATCTGGACAGTGCAGCCATACTTGCCGAGGTGATATTGGT
AAAATCAAAAGAAGCTGGCTATACTTTGGGTCAAGCCAAAGGTGAATTTG
CCACAGGACATGTTGCTTATCTAAAAGGAAAACGAGAATACGCTGTCCCT
CATTTTCTAAAGGCTCTTGACATTTATCGACCTTTAAAAGGTAACGATCC
GTTAATTGATCAAGCCAATATTTGTATCACCTTAGGTAAAATTTATCGTC
AGAACCATATGCTTGACATGGCAATAGAGTTTTATGAACAAGGGATTGAG
TATGCGCTAGAATGCAATAATGAAGAAGCTCTTAGAAAGTTACTTTACAA
TCAATCCGTCGCCTACCGAAGAAACGGTGATATTGACAAAGCTCTGGATG
CGGTAACGCAAAGCATGAATTTTATACTCGAAGGAGACACAGCAATCAAG
CAAAGAACTTACAATCAATTTGGTGTTATTTATTATGATTTGGAAGAATA
TGATCAAGCCAGAGAATGGTACAACAAAATGATTCAATTGGACTCAGCAA
AACCGTCACCCAAGTACTATCGTGCCCAGGCCTATCACAATATTGCAATA
TCCTACCAGCTACAAAGCAACTTTGCTATGGCATGGGTGTACTACAAGCT
AGCTTTAAAAGAAAAGGAACTATTAGGCAATACAGAAAAGCTCTTCATAA
CTTTACGCGACATGGCCGAGTTAGCACTTTTGGAAAATAGAAAAGATACT
GCTCTAAACTACGCTCATAAAGCATTAGTCTTGATTGAGCAAGTGCCTAA
AACGCCTGAGAATTACAATTTGTACCTCACCTTGTCTGAATGCGTGCAAG
AATCAAATCCTGTAAAAGCACTCTTTTATGCCAAACAATACATATCAGAA
ACCAAGGCTTTTTACAGTACTAATCTGGACAGTGCAGCCATACTTGCCGA
GGTGATATTGGTAAAATCAAAAGAAGCTGGCTATACTTTGGGTCAAGCCA
AAGGTGAATTTGCCACAGGACATGTTGCTTATCTAAAAGGAAAACGAGAA
TACGCTGTCCCTCATTTTCTAAAGGCTCTTGACATTTATCGACCTTTAAA
AGGTAACGATCCGTTAATTGATCAAGCCAATATTTGTATCACCTTAGGTA
AAATTTATCGTCAGAACCATATGCTTGACATGGCAATAGAGTTTTATGAA
CAAGGGATTGAGTATGCGCTAGAATGCAATAATGAAGAAGCTCTTAGAAA
GTTACTTTACAATCAATCCGTCGCCTACCGAAGAAACGGTGATATTGACA
AAGCTCTGGATGCGGTAACGCAAAGCATGAATTTTATACTCGAAGGAGAC
ACAGCAATCAAGCAAAGAACTTACAATCAATTTGGTGTTATTTATTATGA
TTTGGAAGAATATGATCAAGCCAGAGAATGGTACAACAAAATGATTCAAT
TGGACTCAGCAAAACCGTCACCCAAGTACTATCGTGCCCAGGCCTATCAC
AATATTGCAATATCCTACCAGCTACAAAGCAACTTTGCTATGGCATGGGT
GTACTACAAGCTAGCTTTAAAAGAAAAGGAACTATTAGGCAATACAGAAA
AGCTCTTCATAACTTTACGCGACATGGCCGAGTTAGCACTTTTGGAAAAT
AGAAAAGATACTGCTCTAAACTACGCTCATAAAGCATTAGTCTTGATTGA
GCAAGTGCCTAAAACGCCTGAGAATTACAATTTGTACCTCACCTTGTCTG
AATGCGTGCAAGAATCAAATCCTGTAAAAGCACTCTTTTATGCCAAACAA
TACATATCAGAAACCAAGGCTTTT
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