mRNA_M-pyrifera_M_contig81710.19130.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81710.19130.1
Unique NamemRNA_M-pyrifera_M_contig81710.19130.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A7Z9UCF6_9BACT (Choice-of-anchor B family protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UCF6_9BACT)

HSP 1 Score: 294 bits (753), Expect = 1.030e-91
Identity = 157/272 (57.72%), Postives = 207/272 (76.10%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVIDDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCED-PGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFNDDSVXXXXXXXXXXXXXXAGCP 813
            YYF+  +  G   T P    SE++TA + S   + FADN ETNTGWS++G+A DGQW RGIP G G+R DP TDADGSGR +LTDNV GNSDVD+GTT LTSPA+DAS AGN  LS+++WY+N+  + +DDSM+++ SNN+G+SWT +L L PGDP T G WV+++ +L  +FT PS +VR+RF V+D+ +GS+VEAGVD +R++  SCED   GC+ AD AEPF  L+ FDV  F+ ++N++D++AD N+D  XXXXXXXXXXXXXXAGCP
Sbjct:  425 YYFQADSDNGATSTFPTAGASEAFTAAVVSDTATLFADNAETNTGWSVSGDAQDGQWNRGIPAGGGERADPPTDADGSGRAWLTDNVEGNSDVDDGTTTLTSPALDAS-AGNTTLSFAMWYNNAGNSAVDDSMTIQASNNNGNSWTTILDLGPGDPGTGGGWVNYEFDLDTIFTNPSSQVRVRFNVADVGEGSIVEAGVDDIRLEQRSCEDVAAGCSDADLAEPFGTLNFFDVSAFLSAYNSNDASADLNNDGSXXXXXXXXXXXXXXAGCP 695          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A2D9C601_9BACT (MAM domain-containing protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C601_9BACT)

HSP 1 Score: 273 bits (699), Expect = 3.950e-83
Identity = 149/272 (54.78%), Postives = 199/272 (73.16%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVIDDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCED-PGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFNDDSVXXXXXXXXXXXXXXAGCP 813
            YYF+ ++  G   T P    +E+ TA + S I+  F D+ ET+TGWS++G+A+DGQW RGIP G G+R DP TDADGSGR +LTDNV GNSDVD+GTT LTSPA+DAS  GN  LS+++WY+N+    +DD M+V+ SNN+G SWT ++ L PGDP T G W++++ +L  +F+ PS +VR+RF V+D+  GS+VEAGVD +R++  SCED   GC  AD AEPF  L+ FDV  ++ +F++ D+ AD N D  XXXXXXXXXXXXXXAGCP
Sbjct:  493 YYFQAESDNGSSSTYPLGGATEALTASVVSDINLLFLDDAETDTGWSVSGDAADGQWNRGIPAGGGERADPPTDADGSGRAWLTDNVEGNSDVDDGTTTLTSPALDAS-GGNTTLSFAMWYNNAGNGEVDDDMTVQASNNNGGSWTTIMDLGPGDPGTGGGWINYEFDLDTIFSNPSSQVRVRFNVADVGSGSIVEAGVDDIRLEQRSCEDVAAGCNLADLAEPFGELNFFDVSVYLSAFSSGDAAADINGDGTXXXXXXXXXXXXXXAGCP 763          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A2A4RQC2_9BACT (MAM domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RQC2_9BACT)

HSP 1 Score: 266 bits (680), Expect = 4.330e-80
Identity = 152/272 (55.88%), Postives = 191/272 (70.22%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVIDDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCED-PGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFNDDSVXXXXXXXXXXXXXXAGCP 813
            YYF   T+E F  T P +  S +  A + SS    +ADN E+NTGWS++G+ SDG WER IP G G RGDP TD DGSG+CYLTDNV GNSDVD GTT LTSPAMDA+  GN  L+Y++WYSN++G V DDSM+V++SNN+G SWT + TL+       G W+++  +L  +F  PS +VR+RF  SD  +GSVVEAGVDAV++   SCED  GGC+GAD AEP+   + FDV  F+ +F+A D  AD   D + XXXXXXXXXXXXX GCP
Sbjct:  530 YYFTATTTESFASTFPTDGASAAIVANVVSSTTEIYADNFESNTGWSVSGSVSDGAWEREIPAGGGGRGDPGTDFDGSGKCYLTDNVEGNSDVDGGTTTLTSPAMDAT-GGNTTLTYAMWYSNNIGTV-DDSMNVQLSNNNGGSWTTIDTLSGSQ---GGGWIEYSFDLNSIFANPSSQVRVRFLASDTGEGSVVEAGVDAVKLIEQSCEDVQGGCSGADLAEPYGTFNFFDVSAFLQAFDAGDPAADLTGDGLLXXXXXXXXXXXXXIGCP 796          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A3M2BI72_9BACT (Choice-of-anchor B family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BI72_9BACT)

HSP 1 Score: 231 bits (589), Expect = 4.190e-67
Identity = 141/272 (51.84%), Postives = 173/272 (63.60%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVI-DDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCEDPGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFNDDSVXXXXXXXXXXXXXXAGCP 813
            YY E Q + G     P  APS  Y+A++AS     F DN E+NTGW+    ASDGQW RG+P G GDRGDP  D DGSGRCYLTDNV GNSDVD+G   LTSPAMDA+  G   L+Y+ WYSN+ G    +D  +VEVSN++GS+W+ +  + P  P   G WV     ++D+F TPS++ R+RFT SD   GSVVEA VDAV + V  C+ P  C      +   VLD FD+L F+  F A D +AD      XXXXXXXXXXXXX AGCP
Sbjct:  496 YYIEAQAASGAYYYAPLTAPSVGYSAIVASQAVPTFEDNFESNTGWTTASTASDGQWTRGVPAGGGDRGDPAQDYDGSGRCYLTDNVDGNSDVDDGAVTLTSPAMDAT-GGEVFLNYARWYSNTAGAAPQEDIFTVEVSNDNGSTWSTLEVVGPTGPEVFGGWVYKSFAISDVFPTPSNQFRVRFTASDFGSGSVVEAAVDAVSLVVYECDVPPECVADRTGD--GVLDFFDILDFLSDFTAQDPSADIVXXXXXXXXXXXXXXXXXAAGCP 764          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A3M2CCT3_9BACT (Choice-of-anchor B family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CCT3_9BACT)

HSP 1 Score: 217 bits (553), Expect = 6.400e-62
Identity = 120/251 (47.81%), Postives = 156/251 (62.15%), Query Frame = 1
Query:    4 YFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASD---GQWERGIPDGDGDRGDPLTDADGSGRCYLTDN--VSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVI-DDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCEDPGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTA 738
            YF V    G   T P NAP+E+ +  +ASS  + FADN ++NTGW+++GNA+    G+WER IP GDG RGDP  D+DGSG CY+T N     N+DVD G TILTSP +D + AG+A +SY  WY+NS G    +D  +V++S N+GSSW  V  + P  P T G W+     + D +  PS   R+RF   D  +GSVVEAGVDA  +  L CED   C  AD AEPF  L+IFD+  FI  +NA D +A
Sbjct:  491 YFRVTLGSGEQATYPANAPAETLSFTVASSQTTAFADNFQSNTGWTVSGNATSAASGRWERAIPAGDGSRGDPPNDSDGSGFCYVTGNGGPGSNTDVDGGNTILTSPTLDTTGAGDAYISYDRWYNNSAGAAPNEDVFTVQISPNNGSSWVTVEVVGPSGPGTGGGWISASFRVAD-YIAPSTTTRVRFIADDAINGSVVEAGVDAFAVTRLECEDVVACQ-ADLAEPFGSLNIFDIQAFIGLYNAQDPSA 739          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A2E7A2G9_9BACT (MAM domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E7A2G9_9BACT)

HSP 1 Score: 213 bits (542), Expect = 2.460e-60
Identity = 120/257 (46.69%), Postives = 163/257 (63.42%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVI-DDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSW--VDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCED-----PGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFN 747
            +Y EV T  G +   P  AP +++TA + +SI + F D+ ETN GWS+TG+A+DGQW RG+P G GDRGDP  D DGSG C+LTDNV GNSDVD G+TILTSP +DAS AG   LSY  W+SN  G    +D+  V+ SNNDG++W  +  + P  P +SG W  V H+++    F  P  E R+RFT  DL  GSVVEAGVD + I+ ++C+D     P  C G D      ++++ D+L  I ++ +SD+  D N
Sbjct:  498 FYIEVATISGGVFREPATAPDDAFTAGVVTSITTTFEDDGETNPGWSVTGDAADGQWSRGVPAGGGDRGDPPADGDGSGACWLTDNVDGNSDVDGGSTILTSPQLDASEAG-LTLSYWRWFSNDFGAAPNEDAFHVDFSNNDGATWYQLEVVAPDAPESSGGWYNVSHELDAVPGFV-PGTEFRLRFTAEDLGQGSVVEAGVDGIVIEAITCDDGNVECPEDCAGDD-----GLVNVNDLLAVIAAWGSSDAACDIN 747          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A5M4D7Q0_9CYAN (Choice-of-anchor B family protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D7Q0_9CYAN)

HSP 1 Score: 206 bits (523), Expect = 1.100e-57
Identity = 133/272 (48.90%), Postives = 166/272 (61.03%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVI-DDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCEDPGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFNDDSVXXXXXXXXXXXXXXAGCP 813
            Y+   Q++ G     P  AP+  + A+ AS   +PF D+ + + GW+  G ASDGQW RG+P G GDRGDP  D DGSG CYLTDNV  NSDVD GT  LTSPAMDAS  G A L+Y+ W+SN+ G    +D  +V+VSN++GSSWT +  + P  P   G WV    +LT +F +PS + + RF  +D   GSVVEA VDAV I +  CE P  C      +    LD FDV  F+  F A   +AD      XXXXXXXXXXXXXXAGCP
Sbjct:  487 YFISAQSTSGEYFFAPLTAPTRGWAAIAASGSSTPFEDDFQADLGWTTAGTASDGQWSRGVPVGGGDRGDPAEDFDGSGACYLTDNVDDNSDVDAGTVTLTSPAMDAS-GGRAFLNYARWFSNTSGAAPQEDVFTVQVSNDNGSSWTTLEVVGPAGPEVFGGWVYKSFDLTTVFASPSSQFKARFIAADEGSGSVVEAAVDAVSIVLYECEAPPTCPPDRNGD--GALDFFDVQDFLADFAAHHPSADLTXXXXXXXXXXXXXXXXXXAGCP 755          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A1W9S8G5_9BACT (MAM domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium 4484_95 TaxID=1970781 RepID=A0A1W9S8G5_9BACT)

HSP 1 Score: 199 bits (507), Expect = 1.530e-57
Identity = 111/235 (47.23%), Postives = 148/235 (62.98%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVG-NVIDDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCEDPGGC----TGADFAEPFAVLDIF 690
            +YF  +   G   + P  AP E+Y A   + I   F DN ETN GW+++G+ASDGQWER IP G GDRGDP TD DGSG CY+TDN   NSDVD+G T LTSP +D S   +A ++Y+LWY+N+ G N  +D     VSNN+G+SW    T+ P    TS  WV+H  ++TD + T +D++R+RF  SDL  GS+VEAG+DAV I+V  C    G     T  D ++P A + +F
Sbjct:  130 FYFTAEEDSGKTFSDPRGAPDETYGAFPVTDIVVVFDDNFETNQGWTVSGDASDGQWERAIPAGGGDRGDPPTDYDGSGMCYVTDNEDDNSDVDDGYTYLTSPTIDLSQVEDAQVNYALWYTNNAGDNPHNDLFKTYVSNNNGASWVLAETIGPA---TSSGWVEHSFSVTD-YVTLTDQIRVRFEASDLGGGSIVEAGIDAVSIEVFECNPASGGIVAGTVTDGSQPIAGVQVF 360          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A5M4D6K6_9CYAN (MAM domain-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D6K6_9CYAN)

HSP 1 Score: 206 bits (523), Expect = 2.490e-57
Identity = 137/272 (50.37%), Postives = 172/272 (63.24%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVGNVI-DDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCEDPGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFNDDSVXXXXXXXXXXXXXXAGCP 813
            +Y E   S G++  LP     + Y A +       + D+ ETN GW+++G A+DGQW RG+P GDG RGDP  DADGSG  +LTDN++GNSDVDNGTTILTSPA+DAS    +VLSY  W+SN  G    +DSM++EVS+N+G +WT V  + P  P  SG W    I + D + TPS++ RIR T +D   GSVVEAGVD V I   SCE+   C G DF      LD FD+  ++ +FNA D  A       XXXXXXXXXXXXX AGCP
Sbjct:  569 FYIEATGSGGYVAHLPAGGSGDPYGATVGVETIVLY-DDAETNIGWTVSGTATDGQWNRGVPAGDGTRGDPPVDADGSGAAWLTDNLAGNSDVDNGTTILTSPALDASHPA-SVLSYWTWFSNDAGAAPNEDSMTIEVSDNNGGTWTIVEVIGPTGPQVSGGWYQTSIAVAD-YVTPSNQFRIRVTAADTGSGSVVEAGVDGVSIIAFSCEEEE-CVG-DFNGD-QTLDFFDIQAYLAAFNAHDPAAXXXXXXXXXXXXXXXXXXXXAAGCP 834          
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Match: A0A6I7PNJ6_9BACT (MAM domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6I7PNJ6_9BACT)

HSP 1 Score: 202 bits (513), Expect = 1.130e-55
Identity = 116/239 (48.54%), Postives = 153/239 (64.02%), Query Frame = 1
Query:    1 YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITGNASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTILTSPAMDASSAGNAVLSYSLWYSNSVG-NVIDDSMSVEVSNNDGSSWTNVLTLNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVDAVRIDVLSCED-PGGCTG---ADFAEPFAVLDIFDVLG 702
            +YF  Q S G + T P NAP  ++TA+ A+SIDS   D+ ET+ GW++  + +DG+WERG+P G G RGDP TD DGSG+CYLT N  G+SDVDNG+TILTSP MDAS  G A +SY+ WYSN+ G N   D   VE+SNN+G+SW N+ T+ P  P ++G W      ++D F  P+  +R+RF  SDL   +VVEA VDAV +   +C+  PG   G    DFA+   VL  F   G
Sbjct:  649 FYFSAQDSMGVVVTSPSNAPGSAFTALSATSIDSVLEDDFETDLGWTVWSDVTDGEWERGVPVGGGLRGDPPTDYDGSGQCYLTGNRPGDSDVDNGSTILTSPVMDAS-GGEAYISYARWYSNNFGANPNTDIFVVELSNNNGASWVNLETVGPAGPESNGGWYYVTYRISD-FIEPTSTMRVRFIASDLGPQAVVEAAVDAVSVRTAACDTCPGDANGDGVVDFADLSIVLGAFGDTG 885          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81710.19130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9UCF6_9BACT1.030e-9157.72Choice-of-anchor B family protein n=1 Tax=Phycisph... [more]
A0A2D9C601_9BACT3.950e-8354.78MAM domain-containing protein n=2 Tax=Phycisphaera... [more]
A0A2A4RQC2_9BACT4.330e-8055.88MAM domain-containing protein n=1 Tax=bacterium Ta... [more]
A0A3M2BI72_9BACT4.190e-6751.84Choice-of-anchor B family protein n=1 Tax=Planctom... [more]
A0A3M2CCT3_9BACT6.400e-6247.81Choice-of-anchor B family protein n=1 Tax=Planctom... [more]
A0A2E7A2G9_9BACT2.460e-6046.69MAM domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A5M4D7Q0_9CYAN1.100e-5748.90Choice-of-anchor B family protein n=1 Tax=Cyanobac... [more]
A0A1W9S8G5_9BACT1.530e-5747.23MAM domain-containing protein n=1 Tax=candidate di... [more]
A0A5M4D6K6_9CYAN2.490e-5750.37MAM domain-containing protein n=1 Tax=Cyanobacteri... [more]
A0A6I7PNJ6_9BACT1.130e-5548.54MAM domain-containing protein n=1 Tax=Phycisphaera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81710contigM-pyrifera_M_contig81710:5..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.9
Seed ortholog evalue1e-12
Seed eggNOG ortholog1122179.KB890434_gene874
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellulase activity
EggNOG OGs1IYS6@117747,4NDUD@976,COG4733@1,COG4733@2,COG5276@1,COG5276@2
COG Functional cat.S
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size816
Cds size816
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816724.7459304-CDS-M-pyrifera_M_contig81710:4..8201622816724.7459304-CDS-M-pyrifera_M_contig81710:4..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81710 5..820 +
1692278142.006332-CDS-M-pyrifera_M_contig81710:4..8201692278142.006332-CDS-M-pyrifera_M_contig81710:4..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81710 5..820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81710.19130.1prot_M-pyrifera_M_contig81710.19130.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81710 5..820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81710.19130.1

>prot_M-pyrifera_M_contig81710.19130.1 ID=prot_M-pyrifera_M_contig81710.19130.1|Name=mRNA_M-pyrifera_M_contig81710.19130.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=272bp
YYFEVQTSEGFIGTLPENAPSESYTAVIASSIDSPFADNMETNTGWSITG
NASDGQWERGIPDGDGDRGDPLTDADGSGRCYLTDNVSGNSDVDNGTTIL
TSPAMDASSAGNAVLSYSLWYSNSVGNVIDDSMSVEVSNNDGSSWTNVLT
LNPGDPNTSGSWVDHQINLTDLFTTPSDEVRIRFTVSDLFDGSVVEAGVD
AVRIDVLSCEDPGGCTGADFAEPFAVLDIFDVLGFIDSFNASDSTADFND
DSVFDIFDVLGFIESFNAGCP*
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mRNA from alignment at M-pyrifera_M_contig81710:5..820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81710.19130.1 ID=mRNA_M-pyrifera_M_contig81710.19130.1|Name=mRNA_M-pyrifera_M_contig81710.19130.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig81710:5..820+ (Macrocystis pyrifera P11B4 male)
TACTACTTCGAAGTCCAGACATCTGAAGGATTCATCGGGACGCTCCCTGA GAACGCGCCCAGCGAGAGCTACACGGCCGTGATCGCGAGCAGCATTGACT CCCCGTTCGCTGACAATATGGAAACGAACACTGGATGGAGCATCACAGGA AACGCAAGCGACGGACAATGGGAACGCGGCATCCCCGATGGGGACGGCGA TCGCGGTGATCCGCTCACAGACGCCGACGGCTCTGGACGCTGCTATCTCA CTGACAATGTATCCGGCAACTCAGATGTCGACAACGGCACGACGATCCTC ACGAGTCCCGCGATGGACGCTTCATCTGCAGGCAACGCCGTGCTCAGCTA CAGCTTGTGGTACTCCAACTCTGTCGGCAACGTCATCGACGACTCGATGA GCGTCGAAGTCTCCAACAACGATGGATCGTCGTGGACCAATGTGCTGACG CTCAATCCCGGGGATCCGAACACATCGGGAAGCTGGGTCGATCATCAGAT CAATCTCACAGATCTCTTCACGACGCCGTCTGATGAAGTCCGGATCCGAT TCACAGTCTCCGATCTCTTCGACGGCTCTGTCGTCGAAGCGGGAGTTGAC GCCGTGCGAATCGATGTCCTCTCCTGCGAGGATCCGGGTGGATGCACAGG CGCTGACTTTGCTGAGCCGTTCGCGGTGCTCGACATCTTCGATGTCCTTG GATTCATCGACTCGTTCAATGCTTCAGACAGCACAGCAGATTTCAACGAC GACAGCGTATTCGACATCTTCGATGTGCTCGGATTCATCGAGAGCTTCAA CGCGGGATGTCCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81710:5..820+

>mRNA_M-pyrifera_M_contig81710.19130.1 ID=mRNA_M-pyrifera_M_contig81710.19130.1|Name=mRNA_M-pyrifera_M_contig81710.19130.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1632bp|location=Sequence derived from alignment at M-pyrifera_M_contig81710:5..820+ (Macrocystis pyrifera P11B4 male)
TACTACTTCGAAGTCCAGACATCTGAAGGATTCATCGGGACGCTCCCTGA
GAACGCGCCCAGCGAGAGCTACACGGCCGTGATCGCGAGCAGCATTGACT
CCCCGTTCGCTGACAATATGGAAACGAACACTGGATGGAGCATCACAGGA
AACGCAAGCGACGGACAATGGGAACGCGGCATCCCCGATGGGGACGGCGA
TCGCGGTGATCCGCTCACAGACGCCGACGGCTCTGGACGCTGCTATCTCA
CTGACAATGTATCCGGCAACTCAGATGTCGACAACGGCACGACGATCCTC
ACGAGTCCCGCGATGGACGCTTCATCTGCAGGCAACGCCGTGCTCAGCTA
CAGCTTGTGGTACTCCAACTCTGTCGGCAACGTCATCGACGACTCGATGA
GCGTCGAAGTCTCCAACAACGATGGATCGTCGTGGACCAATGTGCTGACG
CTCAATCCCGGGGATCCGAACACATCGGGAAGCTGGGTCGATCATCAGAT
CAATCTCACAGATCTCTTCACGACGCCGTCTGATGAAGTCCGGATCCGAT
TCACAGTCTCCGATCTCTTCGACGGCTCTGTCGTCGAAGCGGGAGTTGAC
GCCGTGCGAATCGATGTCCTCTCCTGCGAGGATCCGGGTGGATGCACAGG
CGCTGACTTTGCTGAGCCGTTCGCGGTGCTCGACATCTTCGATGTCCTTG
GATTCATCGACTCGTTCAATGCTTCAGACAGCACAGCAGATTTCAACGAC
GACAGCGTATTCGACATCTTCGATGTGCTCGGATTCATCGAGAGCTTCAA
CGCGGGATGTCCTTGATACTACTTCGAAGTCCAGACATCTGAAGGATTCA
TCGGGACGCTCCCTGAGAACGCGCCCAGCGAGAGCTACACGGCCGTGATC
GCGAGCAGCATTGACTCCCCGTTCGCTGACAATATGGAAACGAACACTGG
ATGGAGCATCACAGGAAACGCAAGCGACGGACAATGGGAACGCGGCATCC
CCGATGGGGACGGCGATCGCGGTGATCCGCTCACAGACGCCGACGGCTCT
GGACGCTGCTATCTCACTGACAATGTATCCGGCAACTCAGATGTCGACAA
CGGCACGACGATCCTCACGAGTCCCGCGATGGACGCTTCATCTGCAGGCA
ACGCCGTGCTCAGCTACAGCTTGTGGTACTCCAACTCTGTCGGCAACGTC
ATCGACGACTCGATGAGCGTCGAAGTCTCCAACAACGATGGATCGTCGTG
GACCAATGTGCTGACGCTCAATCCCGGGGATCCGAACACATCGGGAAGCT
GGGTCGATCATCAGATCAATCTCACAGATCTCTTCACGACGCCGTCTGAT
GAAGTCCGGATCCGATTCACAGTCTCCGATCTCTTCGACGGCTCTGTCGT
CGAAGCGGGAGTTGACGCCGTGCGAATCGATGTCCTCTCCTGCGAGGATC
CGGGTGGATGCACAGGCGCTGACTTTGCTGAGCCGTTCGCGGTGCTCGAC
ATCTTCGATGTCCTTGGATTCATCGACTCGTTCAATGCTTCAGACAGCAC
AGCAGATTTCAACGACGACAGCGTATTCGACATCTTCGATGTGCTCGGAT
TCATCGAGAGCTTCAACGCGGGATGTCCTTGA
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