mRNA_M-pyrifera_M_contig81649.19114.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81649.19114.1
Unique NamemRNA_M-pyrifera_M_contig81649.19114.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81649.19114.1 vs. uniprot
Match: UPI001AC45BD4 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC45BD4)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-7
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:   10 MITLAQASVDAS-FWIWLGVLVLVVLVGGAVLLGVRRRMFSDETQADFQAGGILEQLRTLRNEGKISKEEYEQTRKSLIAKV 252
            M  LAQ + D +   +WLG+ ++ V++ G  ++ VRRR+   +   + + G  L++LR +R+ GK++KEEY+  RKSL A++
Sbjct:    7 MTLLAQQTRDPTRLLLWLGIFIVAVVILGVAIMMVRRRVLGSDMSRETEQG-FLDELRQMRDSGKMTKEEYDLARKSLTARL 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig81649.19114.1 vs. uniprot
Match: A0A2E3RRD9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E3RRD9_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 5.550e-7
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   55 WLGVLVLVVLVGGAVLLGVRRRMFSDETQADFQAGGILEQLRTLRNEGKISKEEYEQTRKSLIAKVSEHKPET 273
            WLG+L+LVV+VGGA +L +RR   + ++Q   Q G  LE +R L   G++S EE+++ R++LI +   H  E+
Sbjct:   33 WLGLLLLVVIVGGAFVLMIRR---TTKSQGPGQGGFTLEDIRQLHRSGELSDEEFQKAREALIQQARSHDGES 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig81649.19114.1 vs. uniprot
Match: A0A4P5X8Q6_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5X8Q6_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 9.980e-6
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    7 MMITLAQASVDASF---WIWLGVLVLVVLVGGAVLLGVRRRMFSDETQADFQAG--GILEQLRTLRNEGKISKEEYEQTRKSLIAKVSE 258
            M+  LAQ++  A+    W+   V+ ++VL GGA+L  VR+ M     + D   G  G+LE +R +R+EGK+S EEY+Q RK +I K +E
Sbjct:    1 MIFLLAQSTKQANNVVPWVIALVIAVLVLFGGALL--VRKWML----RGDISPGDEGLLESMRRMRDEGKLSDEEYQQARKQMIGKAAE 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81649.19114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001AC45BD41.700e-736.59Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A2E3RRD9_9BACT5.550e-741.10Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A4P5X8Q6_9BACT9.980e-640.45Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81649contigM-pyrifera_M_contig81649:426..740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size315
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.95778-UTR-M-pyrifera_M_contig81649:425..4311622816723.95778-UTR-M-pyrifera_M_contig81649:425..431Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81649 426..431 +
1692278141.4766104-UTR-M-pyrifera_M_contig81649:425..4311692278141.4766104-UTR-M-pyrifera_M_contig81649:425..431Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81649 426..431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.9725525-CDS-M-pyrifera_M_contig81649:431..7401622816723.9725525-CDS-M-pyrifera_M_contig81649:431..740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81649 432..740 +
1692278141.4877114-CDS-M-pyrifera_M_contig81649:431..7401692278141.4877114-CDS-M-pyrifera_M_contig81649:431..740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81649 432..740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81649.19114.1prot_M-pyrifera_M_contig81649.19114.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81649 432..740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81649.19114.1

>prot_M-pyrifera_M_contig81649.19114.1 ID=prot_M-pyrifera_M_contig81649.19114.1|Name=mRNA_M-pyrifera_M_contig81649.19114.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MMITLAQASVDASFWIWLGVLVLVVLVGGAVLLGVRRRMFSDETQADFQA
GGILEQLRTLRNEGKISKEEYEQTRKSLIAKVSEHKPETAADNERSREST
SE*
back to top

mRNA from alignment at M-pyrifera_M_contig81649:426..740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81649.19114.1 ID=mRNA_M-pyrifera_M_contig81649.19114.1|Name=mRNA_M-pyrifera_M_contig81649.19114.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig81649:426..740+ (Macrocystis pyrifera P11B4 male)
CCGCTCATGATGATTACTCTTGCTCAAGCGAGTGTGGATGCTTCGTTCTG
GATTTGGTTGGGCGTGCTCGTTCTCGTCGTCCTCGTCGGCGGGGCAGTCC
TGCTGGGTGTTCGTCGGCGCATGTTTTCTGACGAGACTCAAGCGGATTTT
CAAGCGGGAGGGATCCTTGAACAGCTCCGCACGCTCCGTAATGAAGGAAA
GATCTCCAAAGAAGAGTACGAGCAGACTCGCAAGTCGCTGATCGCGAAAG
TCTCTGAGCACAAGCCGGAAACGGCTGCCGACAACGAGCGCAGCAGAGAA
TCAACAAGCGAATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81649:426..740+

>mRNA_M-pyrifera_M_contig81649.19114.1 ID=mRNA_M-pyrifera_M_contig81649.19114.1|Name=mRNA_M-pyrifera_M_contig81649.19114.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig81649:426..740+ (Macrocystis pyrifera P11B4 male)
ATGATGATTACTCTTGCTCAAGCGAGTGTGGATGCTTCGTTCTGGATTTG
GTTGGGCGTGCTCGTTCTCGTCGTCCTCGTCGGCGGGGCAGTCCTGCTGG
GTGTTCGTCGGCGCATGTTTTCTGACGAGACTCAAGCGGATTTTCAAGCG
GGAGGGATCCTTGAACAGCTCCGCACGCTCCGTAATGAAGGAAAGATCTC
CAAAGAAGAGTACGAGCAGACTCGCAAGTCGCTGATCGCGAAAGTCTCTG
AGCACAAGCCGGAAACGGCTGCCGACAACGAGCGCAGCAGAGAATCAACA
AGCGAATAGATGATGATTACTCTTGCTCAAGCGAGTGTGGATGCTTCGTT
CTGGATTTGGTTGGGCGTGCTCGTTCTCGTCGTCCTCGTCGGCGGGGCAG
TCCTGCTGGGTGTTCGTCGGCGCATGTTTTCTGACGAGACTCAAGCGGAT
TTTCAAGCGGGAGGGATCCTTGAACAGCTCCGCACGCTCCGTAATGAAGG
AAAGATCTCCAAAGAAGAGTACGAGCAGACTCGCAAGTCGCTGATCGCGA
AAGTCTCTGAGCACAAGCCGGAAACGGCTGCCGACAACGAGCGCAGCAGA
GAATCAACAAGCGAATAG
back to top