mRNA_M-pyrifera_M_contig81649.19113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81649.19113.1
Unique NamemRNA_M-pyrifera_M_contig81649.19113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A2D9C6A7_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C6A7_9BACT)

HSP 1 Score: 183 bits (464), Expect = 9.400e-56
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSSF 396
            LYGFDL ASGNH+AI A +LL GSPMA+L+++ D+ + DCQP +GM + D++GLEVHFEVKTRSK GK+   P  DPISVYLTLR++DPVT+L+ L N+L+ L+ERGQ LVDE+ +P+LLMPLREEIASSSF
Sbjct:  117 LYGFDLNASGNHDAIAANALLAGSPMAALIDAADINILDCQPNLGMKLVDDAGLEVHFEVKTRSK-GKKPTEPNPDPISVYLTLRRFDPVTDLNDLTNQLDDLIERGQNLVDEYALPNLLMPLREEIASSSF 247          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A2A4RFH0_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RFH0_9BACT)

HSP 1 Score: 176 bits (447), Expect = 2.130e-53
Identity = 88/136 (64.71%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDV----RVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSSF 396
            LYGFDL A GNH+AI A +L  GSPMA+L+++D +    +V DCQP +GM + D+ GLEVHFEVKTRSK GK++A P ++PISVYLTLRKYDPVTNLD L  +L+ ++ERGQ LVDE+ +P+LLMPLREEIAS SF
Sbjct:   96 LYGFDLAAPGNHDAIAAXALFAGSPMAALLDTDSIGEGIQVLDCQPSMGMKLVDDDGLEVHFEVKTRSK-GKKNAEPNTEPISVYLTLRKYDPVTNLDELRPKLDEMIERGQNLVDEYALPNLLMPLREEIASGSF 230          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A812XWR1_9DINO (YeiB protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XWR1_9DINO)

HSP 1 Score: 167 bits (422), Expect = 2.170e-45
Identity = 78/134 (58.21%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGK--QSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSSF 396
            LYGFDL A  NH+ I A++LL GSP+A+L++++ ++++DCQP++GM + DE GLE HFE+KTR+K G    SA  +S+PISVYLTLR+YDPVT+L  L  +LN L+ERGQ LVD++ VP+LL+PLREEI S S+
Sbjct:  768 LYGFDLAAKENHDEIAASALLAGSPLAALIDNESIKISDCQPLLGMNLLDEPGLEAHFEIKTRTKTGPGAHSAGSSSEPISVYLTLRRYDPVTDLKDLGTQLNELIERGQDLVDQYAVPNLLLPLREEIGSRSY 901          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A7Y5STG1_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5STG1_9BACT)

HSP 1 Score: 125 bits (314), Expect = 4.030e-33
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSS 393
            LYGFDL A GNH+AIV  +L+ GSP+++L+E       DCQP+VG+++  +  +EV+FEVKTRS           DPIS++LTLRK+ P T++ AL   L  L   G++LV+  VVP LL+P+RE IAS +
Sbjct:  117 LYGFDLSAPGNHDAIVLDALIPGSPLSALLEIPGASPIDCQPVVGLSLGGKGEVEVYFEVKTRSSTHPNRDPEAGDPISIFLTLRKFGPFTDVKALPVALAELARHGEELVERRVVPGLLVPIREAIASGN 247          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A3M2CQX4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CQX4_9BACT)

HSP 1 Score: 124 bits (312), Expect = 7.110e-33
Identity = 66/132 (50.00%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSSF 396
            L+GFDL A  NH+ IVA++LL GSP+A+L +  +  V +CQP+VG+T+  + GL    EVKTRS K   + +   DPIS+Y+T+R  +PVT+L  L   ++ L  RG++LVD   VP+LL+PLREEIAS+SF
Sbjct:  117 LFGFDLAARSNHDTIVASALLDGSPLAALFDLPNATVRECQPLVGLTL--DHGLHASVEVKTRSAK---AGAERPDPISLYVTVRSTEPVTDLKHLPARMDMLAARGRELVDTLAVPALLIPLREEIASASF 243          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A7D8UFA5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8UFA5_9BACT)

HSP 1 Score: 119 bits (299), Expect = 6.770e-31
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSSF 396
            L+GFDL  S  H+ IV  +L  G+P+  L+     R  DCQP++G+ ++D   LE HFEVKTR+ +      P  +PISVYLT+RKY PV +L  L + ++ L  RG++LV++ +VPSLL P+RE IA+  F
Sbjct:  117 LFGFDLLTSRPHDPIVHRALYDGTPLGDLIALPGARAVDCQPLLGLALSDTGDLEAHFEVKTRTHEHADGDGP--EPISVYLTVRKYGPVGDLKELPDVIDDLARRGERLVEDRLVPSLLGPIREAIAAEGF 246          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: UPI0019AEDAD5 (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI0019AEDAD5)

HSP 1 Score: 117 bits (293), Expect = 5.600e-30
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTR-SKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIAS 387
            LYGFDL A+GNH+AIV  +L+  SP+ASL +S +  V +C P++G+ + +   L+ H EVKTR S +  ++     +P+SVYLT+RKY P+ ++  L      LVE+G++LV   +VP++LMP+RE I S
Sbjct:  118 LYGFDLVAAGNHDAIVFRALMQNSPLASLADSPEAVVLECPPVLGIALDESCSLQAHIEVKTRTSTRQVRTGEYRDEPLSVYLTVRKYGPINDIKDLAAVQALLVEKGEELVTSKIVPNVLMPIREAIVS 247          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: UPI0019936B7C (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI0019936B7C)

HSP 1 Score: 117 bits (292), Expect = 7.540e-30
Identity = 58/130 (44.62%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTR-SKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIAS 387
            LYGFDL A+GNH+AIV  +L+ G+P+ S+++  +    DCQP+ G+ + ++  L+ HFEVKTR S +  +S      PIS+YLT+RKY PV+++  L   L  L + G++L+D   VP+LLMP+R  I S
Sbjct:  117 LYGFDLLAAGNHDAIVFDALIAGTPLGSVLDISEGVPIDCQPLFGVCLDEQCDLQAHFEVKTRTSTRNVRSGEFRDTPISIYLTIRKYGPVSDIKMLPEVLAQLRKHGEELLDSRAVPNLLMPIRNSITS 246          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: A0A7Y5SBH7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5SBH7_9BACT)

HSP 1 Score: 115 bits (289), Expect = 2.220e-29
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIAS 387
            L+GFDL A+GNH+AIV  +LL  SP+  L +S  + VTDCQP +G ++     +E  FEVKTR+ +  Q+     +PISVYLTLRK+  V +L  L    + L   G+++ +  VVP+ L+PLR+ IAS
Sbjct:  117 LFGFDLSAAGNHDAIVYEALLADSPLGKLADSSALGVTDCQPSLGFSIGRRGDIEAAFEVKTRTAQQSQNPEAPPEPISVYLTLRKFGSVMDLKDLAGTFDRLASVGEEMAEARVVPTFLVPLRDAIAS 245          
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Match: UPI001AC8BA27 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC8BA27)

HSP 1 Score: 114 bits (284), Expect = 1.240e-28
Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTDESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNELNALVERGQQLVDEHVVPSLLMPLREEIASSS 393
            LYGFDL A+GNH+AIV  +L+ GSP+A+L++  +    DCQP++G+++     +E +FEVKTR        S   D ISVY TLRK+  V+    L   L  L + G+ LV+  VVP L++P+RE IAS +
Sbjct:  117 LYGFDLAANGNHDAIVLDALIPGSPLAALLDIPNTSPIDCQPLIGLSLGKRGDIECYFEVKTRPGNASPRESEAGDAISVYCTLRKFGGVSETRELPAVLAKLAKIGEDLVEHRVVPGLIVPIREAIASGN 247          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81649.19113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9C6A7_9BACT9.400e-5666.67Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A2A4RFH0_9BACT2.130e-5364.71Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A812XWR1_9DINO2.170e-4558.21YeiB protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A7Y5STG1_9BACT4.030e-3348.09Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3M2CQX4_9BACT7.110e-3350.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7D8UFA5_9BACT6.770e-3145.45Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
UPI0019AEDAD55.600e-3044.62Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
UPI0019936B7C7.540e-3044.62Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7Y5SBH7_9BACT2.220e-2944.96Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
UPI001AC8BA271.240e-2844.27Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81649contigM-pyrifera_M_contig81649:2..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.5
Seed ortholog evalue2e-14
Seed eggNOG ortholog1142394.PSMK_20590
Hectar predicted targeting categoryother localisation
EggNOG OGs2CB5F@1,2IXTM@203682,2ZCDM@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.9228592-CDS-M-pyrifera_M_contig81649:1..4001622816723.9228592-CDS-M-pyrifera_M_contig81649:1..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81649 2..400 +
1692278141.4620066-CDS-M-pyrifera_M_contig81649:1..4001692278141.4620066-CDS-M-pyrifera_M_contig81649:1..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81649 2..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81649.19113.1prot_M-pyrifera_M_contig81649.19113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81649 2..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81649.19113.1

>prot_M-pyrifera_M_contig81649.19113.1 ID=prot_M-pyrifera_M_contig81649.19113.1|Name=mRNA_M-pyrifera_M_contig81649.19113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
LYGFDLQASGNHNAIVAASLLGGSPMASLVESDDVRVTDCQPMVGMTMTD
ESGLEVHFEVKTRSKKGKQSASPTSDPISVYLTLRKYDPVTNLDALVNEL
NALVERGQQLVDEHVVPSLLMPLREEIASSSF*
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mRNA from alignment at M-pyrifera_M_contig81649:2..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81649.19113.1 ID=mRNA_M-pyrifera_M_contig81649.19113.1|Name=mRNA_M-pyrifera_M_contig81649.19113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig81649:2..400+ (Macrocystis pyrifera P11B4 male)
CTCTACGGCTTCGATCTCCAAGCATCGGGAAATCACAACGCGATCGTCGC GGCTTCGCTTCTGGGAGGATCCCCAATGGCGAGTCTCGTCGAGTCAGATG ATGTTCGCGTCACAGATTGTCAGCCGATGGTCGGGATGACAATGACTGAC GAGTCAGGACTCGAAGTGCACTTTGAAGTGAAGACGCGATCGAAGAAGGG GAAGCAGAGCGCTTCGCCGACGAGCGATCCGATCAGTGTGTATCTCACGC TTCGCAAGTACGATCCAGTGACGAATCTCGACGCGCTCGTCAATGAACTC AACGCGCTCGTCGAGCGGGGACAGCAGCTCGTTGATGAGCATGTTGTTCC CAGCTTGCTGATGCCTCTGCGCGAAGAGATCGCGTCGAGCTCGTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81649:2..400+

>mRNA_M-pyrifera_M_contig81649.19113.1 ID=mRNA_M-pyrifera_M_contig81649.19113.1|Name=mRNA_M-pyrifera_M_contig81649.19113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig81649:2..400+ (Macrocystis pyrifera P11B4 male)
CTCTACGGCTTCGATCTCCAAGCATCGGGAAATCACAACGCGATCGTCGC
GGCTTCGCTTCTGGGAGGATCCCCAATGGCGAGTCTCGTCGAGTCAGATG
ATGTTCGCGTCACAGATTGTCAGCCGATGGTCGGGATGACAATGACTGAC
GAGTCAGGACTCGAAGTGCACTTTGAAGTGAAGACGCGATCGAAGAAGGG
GAAGCAGAGCGCTTCGCCGACGAGCGATCCGATCAGTGTGTATCTCACGC
TTCGCAAGTACGATCCAGTGACGAATCTCGACGCGCTCGTCAATGAACTC
AACGCGCTCGTCGAGCGGGGACAGCAGCTCGTTGATGAGCATGTTGTTCC
CAGCTTGCTGATGCCTCTGCGCGAAGAGATCGCGTCGAGCTCGTTCTGAC
TCTACGGCTTCGATCTCCAAGCATCGGGAAATCACAACGCGATCGTCGCG
GCTTCGCTTCTGGGAGGATCCCCAATGGCGAGTCTCGTCGAGTCAGATGA
TGTTCGCGTCACAGATTGTCAGCCGATGGTCGGGATGACAATGACTGACG
AGTCAGGACTCGAAGTGCACTTTGAAGTGAAGACGCGATCGAAGAAGGGG
AAGCAGAGCGCTTCGCCGACGAGCGATCCGATCAGTGTGTATCTCACGCT
TCGCAAGTACGATCCAGTGACGAATCTCGACGCGCTCGTCAATGAACTCA
ACGCGCTCGTCGAGCGGGGACAGCAGCTCGTTGATGAGCATGTTGTTCCC
AGCTTGCTGATGCCTCTGCGCGAAGAGATCGCGTCGAGCTCGTTCTGA
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