mRNA_M-pyrifera_M_contig81644.19110.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81644.19110.1
Unique NamemRNA_M-pyrifera_M_contig81644.19110.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81644.19110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81644contigM-pyrifera_M_contig81644:479..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81644.19110.1prot_M-pyrifera_M_contig81644.19110.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81644 482..925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.7897513-UTR-M-pyrifera_M_contig81644:478..4811622816723.7897513-UTR-M-pyrifera_M_contig81644:478..481Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81644 479..481 +
1692278141.3793552-UTR-M-pyrifera_M_contig81644:478..4811692278141.3793552-UTR-M-pyrifera_M_contig81644:478..481Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81644 479..481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.8023534-CDS-M-pyrifera_M_contig81644:481..6401622816723.8023534-CDS-M-pyrifera_M_contig81644:481..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81644 482..640 +
1692278141.3947375-CDS-M-pyrifera_M_contig81644:481..6401692278141.3947375-CDS-M-pyrifera_M_contig81644:481..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81644 482..640 +
1622816723.8183854-CDS-M-pyrifera_M_contig81644:775..9251622816723.8183854-CDS-M-pyrifera_M_contig81644:775..925Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81644 776..925 +
1692278141.4055114-CDS-M-pyrifera_M_contig81644:775..9251692278141.4055114-CDS-M-pyrifera_M_contig81644:775..925Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81644 776..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81644.19110.1

>prot_M-pyrifera_M_contig81644.19110.1 ID=prot_M-pyrifera_M_contig81644.19110.1|Name=mRNA_M-pyrifera_M_contig81644.19110.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MLSIVDFGANEISSIELDSSEQVLCSLEVLTLGGNDLESLPSALYGLTSL
RRIHLTGIDLTGNRFTAFPVELASLPNLTKVDISTATIGSIASASCLQHL
VEL
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mRNA from alignment at M-pyrifera_M_contig81644:479..925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81644.19110.1 ID=mRNA_M-pyrifera_M_contig81644.19110.1|Name=mRNA_M-pyrifera_M_contig81644.19110.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig81644:479..925+ (Macrocystis pyrifera P11B4 male)
CCGATGCTGTCGATTGTGGACTTTGGCGCTAACGAGATTTCCTCCATCGA
GCTGGATTCATCTGAGCAGGTCCTGTGCTCACTGGAGGTTCTCACCCTTG
GCGGCAACGACTTGGAGAGTTTGCCAAGTGCCCTCTACGGCCTGACTTCG
CTGCGGAGAATTGTTGTGGAAGGAAACCCCCGCTTGGGTCCAATCCATCG
AGTGTTCTGCTCGCCTGAGAACAGAAGTCATCCCCTCGAGTTGGTGCTGG
CGCACCAAGACCTCGACAGCCTGCCAGAGGAGGTGTTTGGCATGTAGCAT
CTGACCGGCATTGACTTGACTGGCAACAGGTTCACTGCCTTCCCTGTGGA
GCTGGCCTCTCTTCCCAACTTGACGAAGGTGGACATCAGCACTGCGACGA
TTGGCTCCATTGCTTCCGCTTCGTGCCTCCAGCACCTGGTGGAGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81644:479..925+

>mRNA_M-pyrifera_M_contig81644.19110.1 ID=mRNA_M-pyrifera_M_contig81644.19110.1|Name=mRNA_M-pyrifera_M_contig81644.19110.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig81644:479..925+ (Macrocystis pyrifera P11B4 male)
ATGCTGTCGATTGTGGACTTTGGCGCTAACGAGATTTCCTCCATCGAGCT
GGATTCATCTGAGCAGGTCCTGTGCTCACTGGAGGTTCTCACCCTTGGCG
GCAACGACTTGGAGAGTTTGCCAAGTGCCCTCTACGGCCTGACTTCGCTG
CGGAGAATTATGCTGTCGATTGTGGACTTTGGCGCTAACGAGATTTCCTC
CATCGAGCTGGATTCATCTGAGCAGGTCCTGTGCTCACTGGAGGTTCTCA
CCCTTGGCGGCAACGACTTGGAGAGTTTGCCAAGTGCCCTCTACGGCCTG
ACTTCGCTGCGGAGAATTCATCTGACCGGCATTGACTTGACTGGCAACAG
GTTCACTGCCTTCCCTGTGGAGCTGGCCTCTCTTCCCAACTTGACGAAGG
TGGACATCAGCACTGCGACGATTGGCTCCATTGCTTCCGCTTCGTGCCTC
CAGCACCTGGTGGAGCTCCATCTGACCGGCATTGACTTGACTGGCAACAG
GTTCACTGCCTTCCCTGTGGAGCTGGCCTCTCTTCCCAACTTGACGAAGG
TGGACATCAGCACTGCGACGATTGGCTCCATTGCTTCCGCTTCGTGCCTC
CAGCACCTGGTGGAGCTC
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