mRNA_M-pyrifera_M_contig81643.19109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81643.19109.1
Unique NamemRNA_M-pyrifera_M_contig81643.19109.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81643.19109.1 vs. uniprot
Match: A0A0D2X5D7_CAPO3 (Kinesin family member 1C n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X5D7_CAPO3)

HSP 1 Score: 51.2 bits (121), Expect = 2.490e-5
Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   58 YHTFTVKVAAGKLTWNAEPRFSDFVAFHKTVRKLFPSLPLMKFPSKQPTKKQTEQFVRKRALKLERYLRAAL 273
            +H + V++  G   W+ + R+S F  FH  +R  FPS   + FP ++    +   FV +R ++LE YLR A+
Sbjct: 1370 FHFYIVRIRVGDNVWDLQRRYSQFREFHLAIRSKFPSGVKIMFPPRKTIGHRNPDFVERRRIRLESYLRCAI 1441
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81643.19109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0D2X5D7_CAPO32.490e-533.33Kinesin family member 1C n=2 Tax=Capsaspora owczar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81643contigM-pyrifera_M_contig81643:305..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.7316906-UTR-M-pyrifera_M_contig81643:304..3341622816723.7316906-UTR-M-pyrifera_M_contig81643:304..334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81643 305..334 +
1692278141.352379-UTR-M-pyrifera_M_contig81643:304..3341692278141.352379-UTR-M-pyrifera_M_contig81643:304..334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81643 305..334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.7441978-CDS-M-pyrifera_M_contig81643:334..5891622816723.7441978-CDS-M-pyrifera_M_contig81643:334..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81643 335..589 +
1692278141.3662302-CDS-M-pyrifera_M_contig81643:334..5891692278141.3662302-CDS-M-pyrifera_M_contig81643:334..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81643 335..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81643.19109.1prot_M-pyrifera_M_contig81643.19109.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81643 335..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81643.19109.1

>prot_M-pyrifera_M_contig81643.19109.1 ID=prot_M-pyrifera_M_contig81643.19109.1|Name=mRNA_M-pyrifera_M_contig81643.19109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MHIPSHGDGYHTFTVKVAAGKLTWNAEPRFSDFVAFHKTVRKLFPSLPLM
KFPSKQPTKKQTEQFVRKRALKLERYLRAALLHAV
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mRNA from alignment at M-pyrifera_M_contig81643:305..589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81643.19109.1 ID=mRNA_M-pyrifera_M_contig81643.19109.1|Name=mRNA_M-pyrifera_M_contig81643.19109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig81643:305..589+ (Macrocystis pyrifera P11B4 male)
ACAAGCAGCATCAGCCTATTCACGCCGAAGATGCATATTCCGAGCCACGG
GGACGGCTACCACACATTCACCGTCAAGGTGGCGGCGGGCAAGCTCACCT
GGAACGCCGAGCCCCGCTTCAGCGACTTTGTGGCCTTCCACAAGACGGTG
CGCAAGCTCTTCCCCTCGCTGCCGCTCATGAAATTCCCTTCCAAGCAACC
CACCAAGAAGCAGACCGAGCAGTTCGTCCGCAAGCGTGCCCTCAAGCTGG
AGCGCTACCTGCGAGCGGCGCTGCTCCATGCAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81643:305..589+

>mRNA_M-pyrifera_M_contig81643.19109.1 ID=mRNA_M-pyrifera_M_contig81643.19109.1|Name=mRNA_M-pyrifera_M_contig81643.19109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig81643:305..589+ (Macrocystis pyrifera P11B4 male)
ATGCATATTCCGAGCCACGGGGACGGCTACCACACATTCACCGTCAAGGT
GGCGGCGGGCAAGCTCACCTGGAACGCCGAGCCCCGCTTCAGCGACTTTG
TGGCCTTCCACAAGACGGTGCGCAAGCTCTTCCCCTCGCTGCCGCTCATG
AAATTCCCTTCCAAGCAACCCACCAAGAAGCAGACCGAGCAGTTCGTCCG
CAAGCGTGCCCTCAAGCTGGAGCGCTACCTGCGAGCGGCGCTGCTCCATG
CAGTCATGCATATTCCGAGCCACGGGGACGGCTACCACACATTCACCGTC
AAGGTGGCGGCGGGCAAGCTCACCTGGAACGCCGAGCCCCGCTTCAGCGA
CTTTGTGGCCTTCCACAAGACGGTGCGCAAGCTCTTCCCCTCGCTGCCGC
TCATGAAATTCCCTTCCAAGCAACCCACCAAGAAGCAGACCGAGCAGTTC
GTCCGCAAGCGTGCCCTCAAGCTGGAGCGCTACCTGCGAGCGGCGCTGCT
CCATGCAGTC
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