mRNA_M-pyrifera_M_contig81597.19096.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81597.19096.1
Unique NamemRNA_M-pyrifera_M_contig81597.19096.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A5A8EJ52_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJ52_CAFRO)

HSP 1 Score: 142 bits (357), Expect = 2.840e-36
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   19 GVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGTLVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHARPHAGG 465
            G+IGGSGL+KS   +F  +   E+ T +G VLLR   +  G TLVFVQRH+A+P  +Y QP+DIN+A+IA AL+  GC+ V+ + SVGSL  S+ VG  VV DD+F P DVRRV + Y  H++PT+ + +R  ++ ++ E    P   G
Sbjct:    9 GIIGGSGLMKSKLPMFADMRREEVHTPSGSVLLRKATLPSGATLVFVQRHKASPSESYAQPSDINFAAIAQALQAAGCQCVVGVYSVGSLTTSIPVGAFVVADDWFCPHDVRRVSTGYSAHFMPTVDEEMRAALIASVKEAGITPVTAG 157          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A2D4CD71_PYTIN (PNP_UDP_1 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD71_PYTIN)

HSP 1 Score: 117 bits (292), Expect = 3.940e-29
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    7 RPVLGVIGGSGLLKSGENVFTA-LPFTEIDTRAGRVLLRAGKMAGGGT-LVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHARPHAGG 465
            RP+LGVIGGS L  + E  F+A L  T I+T  G V+   G+       +VFVQRH A PD  Y QP  IN+ +IA ALK   C AVI + SVGS+   ++VG ++VP+DYF+P D+  +   Y  H +P ++  LR  +L +L +    P+ GG
Sbjct:   32 RPILGVIGGSSLFHAKE--FSASLRETVIETEYGGVVAHVGQWKDWDLQIVFVQRHHADPDGQYKQPRQINFKAIATALKVAQCSAVIGIYSVGSMNALIQVGRVIVPEDYFNPFDIMHMSRHYDAHVVPDMNVELRGRILASLQQGSFDPYDGG 184          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A2R5GE13_9STRA (S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE13_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.870e-26
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    7 RPVLGVIGGSGLLKSGENVFTALPFTEIDTRAG--RVLLRAGKMAGGGTLVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHARPHAGG 465
            + VLGVIGGSGLLKS       +    ++T AG  ++ L   ++     +VF QRH    ++ Y+ P  +N+  +  A+K+VG  A++A+CSVGS+R  + +G LV+PDD+F P  +     D +GH +P  +D+LR  +L AL     RP  GG
Sbjct:   14 KVVLGVIGGSGLLKSAMFAPETMKEEVVETEAGFGKIKLMRKELNEELDIVFAQRHACDVEKDYSPPHLVNFRGLLSAMKQVGVNAILAVCSVGSMRHHIGMGALVLPDDFFCPQHILTTFDDARGHNVPGFNDALRTEILTALFRSGERPLDGG 168          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A0G4GRX3_VITBC (PNP_UDP_1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GRX3_VITBC)

HSP 1 Score: 107 bits (267), Expect = 1.600e-25
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 1
Query:   13 VLGVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGTLVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALH 435
            +LG+IGGSGL  +   +F       + T  GRV     +     T  F+QRH A PD +YTQP  IN  ++  ALKK+G   V+   SVGSL+  + +GT+++P+DYF+P  +   H+D+K H++P+L   +R  +L  LH
Sbjct:   18 MLGIIGGSGLWNTP--LFKEFQEEIVRTEHGRVKAHVNRER---TCAFIQRHNADPDTSYTQPHLINRRALCGALKKLGVTRVVCFSSVGSLKPDIHIGTVLIPNDYFAPWSLPGYHTDHKAHFIPSLDTPMRRQLLELLH 153          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A2D4BH29_PYTIN (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH29_PYTIN)

HSP 1 Score: 102 bits (255), Expect = 1.730e-22
Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 1
Query:   52 GENVFTALPFTEIDTRAGRVLLRAGKMAGGGT-LVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHARPHAGG 465
            G+    +L  T I+T  G V+   G+       +VFVQRH A PD  Y QP  IN+ +IA ALK   C AVI + SVGS+   ++VG ++VP+DYF+P D+  +   Y  H +P ++  LR  +L +L +    P+ GG
Sbjct:  754 GDEFSASLRETVIETEYGGVVAHVGQWKDWDLQIVFVQRHHADPDGQYKQPRQINFKAIATALKVAQCSAVIGIYSVGSMNALIQVGRVIVPEDYFNPFDIMHMSRHYDAHVVPDMNVELRGRILASLQQGSFDPYDGG 892          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A024FWX7_9STRA (PNP_UDP_1 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FWX7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.520e-20
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   16 LGVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGT-LVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHARPH 456
            LGVIGGS L+ S  +         + T  G  +            +V++QRH    D  Y QP  INY  IA   K + C+ VI L SVGS+   ++VG LVVPDDYF+P  +  +   Y  H +P +  SL++ ++  L    ARPH
Sbjct:    4 LGVIGGSSLI-SASSFNKEFKKEVVSTEFGTAVCHVAFWKESPLKVVYIQRHHLEIDEEYRQPRKINYHLIAAVCKHMKCQTVIGLYSVGSMDSKIQVGDLVVPDDYFNPFHILHLSDKYDAHLVPGIDLSLQKKMITILKGNTARPH 150          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: UPI000711855E (methylthioadenosine phosphorylase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711855E)

HSP 1 Score: 89.7 bits (221), Expect = 3.390e-19
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   16 LGVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGTLVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHARPHAGG 465
            LG+I GS LL S    F        ++  G V    G +    ++V ++RH     + YT P+++NY ++ +  KK+GCE +I   SVGSL+ES+ + ++VVPDDY        + +DY  H++P+L   +RE V+  L E    P  GG
Sbjct:    3 LGIILGSSLLSS--KAFNDFATKVFESDFGNVEYSEG-VINSVSVVIIRRHLFDKSQPYTIPSELNYKAMIMTFKKLGCERIIGFYSVGSLKESIPLCSIVVPDDYAYLGAPPHILNDYSSHFVPSLDMEMRERVIQILKENGFSPVCGG 149          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: A0A0G4ITU0_PLABS (PNP_UDP_1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ITU0_PLABS)

HSP 1 Score: 85.9 bits (211), Expect = 2.310e-17
Identity = 54/140 (38.57%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   16 LGVIGGSGLLKSGENVFT--ALPFTEIDTRAGRVLLRAGKMAGGGTLVFVQRHEATPDRTYTQPADINYASIALALKK-VGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLN 426
            + VI GS  L+S  +     A    ++ T  G V +    +A  G +VFVQRH  T DR Y  P  IN+ +I  ALK      AV+ + S GSLR  + VG+LVVPDDYFSP  +  +  D   H +P    +LR+ +L+
Sbjct:   18 VAVIAGSSFLQSAHHWLGDGACLSRDVTTPFGDVAVTCATIAAVG-VVFVQRHRCTADRAYRIPTRINFQAIWWALKHHFNVAAVVGIGSAGSLRRDIPVGSLVVPDDYFSPFHIVSMSEDESSHAVPGFHTALRQRLLS 156          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: W2PKF1_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PKF1_PHYPN)

HSP 1 Score: 80.9 bits (198), Expect = 4.460e-16
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   13 VLGVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGT--------LVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDY 333
            VLGVIGGS L  + ++  + L    ++T  G V+   G               LVFVQRH A PD  Y QP  IN+ +IALALK +GCEAV+ + SVGS+   + VG  VVP+ +
Sbjct:    7 VLGVIGGSSLFHA-KSFSSNLVEQVVETEFGAVVCHIGTWPSRSQDDTTPALQLVFVQRHHADPDGKYRQPRKINFRAIALALKSLGCEAVVGIYSVGSMTPKVGVGRFVVPEAF 120          
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Match: D8M1I7_BLAHO (PNP_UDP_1 domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1I7_BLAHO)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-15
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   16 LGVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGTLVFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESLEVGTLVVPDDYFSPMDVRRVHSDYKGHYLPT-LSDSLRENVLNALHEIHARP 453
            LGVI GS  L+S  + F       I T  G V    G + G   +  ++RH+   ++ Y  P +INY ++  A K+VGC+ +I   SVGSL+ES+ + +++VPDDY          SD+  H++P+ L + +R +V+  L E    P
Sbjct:    3 LGVILGSSFLRS--SAFENFNTHSITTDYGNVQTLEG-VIGEVPITIIRRHQFDVNKKYVPPHEINYKAMIAAFKQVGCDKIIGFYSVGSLKESIPLSSIIVPDDYAYLGCPPYFSSDHSCHFVPSALDEEMRRSVIQILKEDGLNP 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81597.19096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EJ52_CAFRO2.840e-3646.31Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A2D4CD71_PYTIN3.940e-2942.58PNP_UDP_1 domain-containing protein n=1 Tax=Pythiu... [more]
A0A2R5GE13_9STRA9.870e-2638.06S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Ho... [more]
A0A0G4GRX3_VITBC1.600e-2539.01PNP_UDP_1 domain-containing protein n=2 Tax=Vitrel... [more]
A0A2D4BH29_PYTIN1.730e-2238.85Rab-GAP TBC domain-containing protein n=1 Tax=Pyth... [more]
A0A024FWX7_9STRA8.520e-2036.49PNP_UDP_1 domain-containing protein n=1 Tax=Albugo... [more]
UPI000711855E3.390e-1934.67methylthioadenosine phosphorylase n=1 Tax=Blastocy... [more]
A0A0G4ITU0_PLABS2.310e-1738.57PNP_UDP_1 domain-containing protein n=1 Tax=Plasmo... [more]
W2PKF1_PHYPN4.460e-1642.61Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
D8M1I7_BLAHO1.040e-1534.01PNP_UDP_1 domain-containing protein n=1 Tax=Blasto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81597contigM-pyrifera_M_contig81597:1..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue8.7e-25
Seed eggNOG ortholog272952.HpaP812071
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phosphorylase superfamily
EggNOG OGs3Q7BM@4776,COG0005@1,KOG3985@2759
COG Functional cat.F
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size465
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.9508908-CDS-M-pyrifera_M_contig81597:0..2191622816722.9508908-CDS-M-pyrifera_M_contig81597:0..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81597 1..219 -
1692278140.8327503-CDS-M-pyrifera_M_contig81597:0..2191692278140.8327503-CDS-M-pyrifera_M_contig81597:0..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81597 1..219 -
1622816722.966154-CDS-M-pyrifera_M_contig81597:282..5281622816722.966154-CDS-M-pyrifera_M_contig81597:282..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81597 283..528 -
1692278140.8521307-CDS-M-pyrifera_M_contig81597:282..5281692278140.8521307-CDS-M-pyrifera_M_contig81597:282..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81597 283..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81597.19096.1prot_M-pyrifera_M_contig81597.19096.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81597 1..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81597.19096.1

>prot_M-pyrifera_M_contig81597.19096.1 ID=prot_M-pyrifera_M_contig81597.19096.1|Name=mRNA_M-pyrifera_M_contig81597.19096.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MERPVLGVIGGSGLLKSGENVFTALPFTEIDTRAGRVLLRAGKMAGGGTL
VFVQRHEATPDRTYTQPADINYASIALALKKVGCEAVIALCSVGSLRESL
EVGTLVVPDDYFSPMDVRRVHSDYKGHYLPTLSDSLRENVLNALHEIHAR
PHAGG
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mRNA from alignment at M-pyrifera_M_contig81597:1..528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81597.19096.1 ID=mRNA_M-pyrifera_M_contig81597.19096.1|Name=mRNA_M-pyrifera_M_contig81597.19096.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig81597:1..528- (Macrocystis pyrifera P11B4 male)
ATGGAGCGTCCAGTTTTGGGTGTGATTGGAGGGAGTGGGTTGTTAAAGAG TGGAGAAAATGTGTTTACAGCACTTCCATTTACAGAAATCGATACTCGAG CAGGACGTGTGTTACTGCGTGCTGGGAAAATGGCAGGTGGAGGGACATTG GTGTTTGTCCAACGGCATGAAGCAACTCCTGATCGTACTTACACCCAGCC GGCTGACATTAACTACGCTTCCATTGCATTGGCCTTGAAAAAAGTGGTAA GTCGTTGTGAGAAGGGGGCGAAATGATTCTTGGGAGGAAGCCAGTTTTCC GTTTTGCAGGGTTGTGAGGCTGTAATTGCATTGTGCTCTGTGGGATCACT ACGAGAATCACTTGAAGTTGGAACCTTGGTGGTTCCAGATGACTATTTCT CCCCTATGGACGTGAGGCGCGTGCATTCAGACTACAAAGGTCACTATCTT CCAACCTTGTCTGATTCCTTGCGTGAGAATGTGCTCAATGCATTGCATGA AATTCATGCACGACCTCATGCAGGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81597:1..528-

>mRNA_M-pyrifera_M_contig81597.19096.1 ID=mRNA_M-pyrifera_M_contig81597.19096.1|Name=mRNA_M-pyrifera_M_contig81597.19096.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig81597:1..528- (Macrocystis pyrifera P11B4 male)
ATGGAGCGTCCAGTTTTGGGTGTGATTGGAGGGAGTGGGTTGTTAAAGAG
TGGAGAAAATGTGTTTACAGCACTTCCATTTACAGAAATCGATACTCGAG
CAGGACGTGTGTTACTGCGTGCTGGGAAAATGGCAGGTGGAGGGACATTG
GTGTTTGTCCAACGGCATGAAGCAACTCCTGATCGTACTTACACCCAGCC
GGCTGACATTAACTACGCTTCCATTGCATTGGCCTTGAAAAAAGTGATGG
AGCGTCCAGTTTTGGGTGTGATTGGAGGGAGTGGGTTGTTAAAGAGTGGA
GAAAATGTGTTTACAGCACTTCCATTTACAGAAATCGATACTCGAGCAGG
ACGTGTGTTACTGCGTGCTGGGAAAATGGCAGGTGGAGGGACATTGGTGT
TTGTCCAACGGCATGAAGCAACTCCTGATCGTACTTACACCCAGCCGGCT
GACATTAACTACGCTTCCATTGCATTGGCCTTGAAAAAAGTGGGTTGTGA
GGCTGTAATTGCATTGTGCTCTGTGGGATCACTACGAGAATCACTTGAAG
TTGGAACCTTGGTGGTTCCAGATGACTATTTCTCCCCTATGGACGTGAGG
CGCGTGCATTCAGACTACAAAGGTCACTATCTTCCAACCTTGTCTGATTC
CTTGCGTGAGAATGTGCTCAATGCATTGCATGAAATTCATGCACGACCTC
ATGCAGGAGGGGGTTGTGAGGCTGTAATTGCATTGTGCTCTGTGGGATCA
CTACGAGAATCACTTGAAGTTGGAACCTTGGTGGTTCCAGATGACTATTT
CTCCCCTATGGACGTGAGGCGCGTGCATTCAGACTACAAAGGTCACTATC
TTCCAACCTTGTCTGATTCCTTGCGTGAGAATGTGCTCAATGCATTGCAT
GAAATTCATGCACGACCTCATGCAGGAGGG
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