mRNA_M-pyrifera_M_contig81591.19091.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81591.19091.1
Unique NamemRNA_M-pyrifera_M_contig81591.19091.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81591.19091.1 vs. uniprot
Match: A0A2G8KNX0_STIJA (Putative E3 ubiquitin-protein ligase MYCBP2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KNX0_STIJA)

HSP 1 Score: 70.1 bits (170), Expect = 2.740e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 1 
Query:    1 SCDALTVSVDQPIQLAGFGVHGSAEGDSYNAFILVAEGSPSSTSELSGSNVLSSNVCTYTSDSQDPIPLMLDTPVKLHPRAPYTLLMCVNGKCAPCGRGGETSATHTDSGVSFEFSASPLSSNGTSVSSGQLPTVYF 411
            S +A+  S D  + + GFG+ G   G+      L+  GS   + ++ GS    S   TY   +++  P++ D P+ +     Y     +NG  + CG GG+   T TD  ++F+F +S  S+NGT VS+GQ+P +Y+
Sbjct:  127 SVEAIVFSTDTDVVVGGFGLFGG-RGEYIARIKLMELGSTKLSIDMEGSLKAESEEKTYECGTKEEFPILFDEPIPITAGVFYLAWAKINGPSSDCGSGGQAIVT-TDDKITFQFLSSRKSNNGTDVSAGQIPKIYY 261
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BLAST of mRNA_M-pyrifera_M_contig81591.19091.1 vs. uniprot
Match: A0A210PDB7_MIZYE (BTB/POZ domain-containing protein 6 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PDB7_MIZYE)

HSP 1 Score: 53.5 bits (127), Expect = 6.790e-6
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:    7 DALTVSVDQPIQLAGFGVHGSAEGDS-YNAFILVAEGSPSSTSELSGSNVLSSNVCTYTSDSQDPIPLMLDTPVKLHPRAPYTLLMCV-NGKCAPCGRGGETSATHTDSGVSFEFSASPLSSNGTSVSSGQL 396
            DAL   V +P+ + G  + G  EG S YN  I + E       +++ + V+S++       ++    ++   PVK+ P   YTL +C+ NG     G  G +     +  +SF FS+S LS NGT VS GQ+
Sbjct:   75 DALRFKVSEPVNITGLVLFGCTEGSSAYNVHIEIVE-----LGQITKTTVVSTS-------TEKTFEVLFSKPVKVQPNTNYTLKVCLSNGSKTYFGEKGISEVMRGN--ISFVFSSSLLSGNGTEVSRGQI 192
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BLAST of mRNA_M-pyrifera_M_contig81591.19091.1 vs. uniprot
Match: A0A210QE33_MIZYE (BTB/POZ domain-containing protein 6 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QE33_MIZYE)

HSP 1 Score: 53.9 bits (128), Expect = 1.110e-5
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:    7 DALTVSVDQPIQLAGFGVHGSAEGDS-YNAFILVAEGSPSSTSELSGSNVLSSNVCTYTSDSQDPIPLMLDTPVKLHPRAPYTLLMCV-NGKCAPCGRGGETSATHTDSGVSFEFSASPLSSNGTSVSSGQL 396
            DALT  V +P+ + G  + G  EG S YN  I V E       +++ + V+S++       ++    ++   PV++ P   YTL +C+ NG     G  G +     D  +SF FS S  S NGT VS+GQ+
Sbjct:  304 DALTFKVSEPVDITGLVLFGCTEGSSAYNVHIEVVE-----LGQITKTTVVSTS-------TEKTFEVLFSKPVEVQPNKNYTLKVCLGNGPRTYFGENGISRVMCGD--ISFVFSTSSQSGNGTDVSTGQI 421
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BLAST of mRNA_M-pyrifera_M_contig81591.19091.1 vs. uniprot
Match: F2TVK2_SALR5 (RCR-type E3 ubiquitin transferase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVK2_SALR5)

HSP 1 Score: 52.0 bits (123), Expect = 5.990e-5
Identity = 43/141 (30.50%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:    1 SCDALTVSVDQPIQLAGFGVHGSAEGDSYNAFI-LVAEGSPSSTSELSGSNVLSSNVCTYTSD--SQDPIPLMLDTPVKLHPRAPYTLLMCVNGKCAP-CGRGGETSATHTDSGVSFEFSASPLSSNGTSVSSGQLPTVYF 411
            S DA+   V+QPI + GFG++G  +  S+NA + L  +G             L++   TY+S+   ++   ++ D PV + P   Y     +    +  CG  G++     + GV F F ++   SNGT VSSGQ+P + F
Sbjct: 1327 SPDAIGFKVNQPIAICGFGLYGQ-DSMSFNATMKLFVDGK--------AEEPLATKTTTYSSNCPGRNYAAILFDEPVTVEPHQLYIAWALIQSPHSSICGSSGQSVVE--EDGVQFNFVSTHHGSNGTDVSSGQVPAILF 1456
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81591.19091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2G8KNX0_STIJA2.740e-1131.39Putative E3 ubiquitin-protein ligase MYCBP2 n=1 Ta... [more]
A0A210PDB7_MIZYE6.790e-631.82BTB/POZ domain-containing protein 6 n=1 Tax=Mizuho... [more]
A0A210QE33_MIZYE1.110e-532.58BTB/POZ domain-containing protein 6 n=2 Tax=Mizuho... [more]
F2TVK2_SALR55.990e-530.50RCR-type E3 ubiquitin transferase n=1 Tax=Salpingo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81591contigM-pyrifera_M_contig81591:383..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.5
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog7668.SPU_027402-tr
Preferred nameBTBD6
KEGG koko:K10478
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009987,GO:0010498,GO:0016043,GO:0016358,GO:0019005,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0030030,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030900,GO:0031175,GO:0031461,GO:0031625,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045595,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0051603,GO:0051960,GO:0060255,GO:0060284,GO:0060322,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0120036,GO:0120039,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234,GO:2000026
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGs38DDF@33154,3BAEU@33208,3CRYB@33213,KOG2075@1,KOG2075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.739057-CDS-M-pyrifera_M_contig81591:382..8021622816722.739057-CDS-M-pyrifera_M_contig81591:382..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81591 383..802 -
1692278140.7001295-CDS-M-pyrifera_M_contig81591:382..8021692278140.7001295-CDS-M-pyrifera_M_contig81591:382..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81591 383..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81591.19091.1prot_M-pyrifera_M_contig81591.19091.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81591 383..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81591.19091.1

>prot_M-pyrifera_M_contig81591.19091.1 ID=prot_M-pyrifera_M_contig81591.19091.1|Name=mRNA_M-pyrifera_M_contig81591.19091.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
SCDALTVSVDQPIQLAGFGVHGSAEGDSYNAFILVAEGSPSSTSELSGSN
VLSSNVCTYTSDSQDPIPLMLDTPVKLHPRAPYTLLMCVNGKCAPCGRGG
ETSATHTDSGVSFEFSASPLSSNGTSVSSGQLPTVYFYA*
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mRNA from alignment at M-pyrifera_M_contig81591:383..802-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81591.19091.1 ID=mRNA_M-pyrifera_M_contig81591.19091.1|Name=mRNA_M-pyrifera_M_contig81591.19091.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig81591:383..802- (Macrocystis pyrifera P11B4 male)
AGCTGTGATGCGCTGACTGTGTCGGTGGACCAGCCGATTCAGCTGGCTGG
TTTCGGGGTGCATGGCAGCGCGGAAGGCGACTCGTACAATGCGTTCATCC
TGGTGGCTGAAGGCTCTCCCAGCAGCACATCGGAGCTATCGGGGAGCAAC
GTGCTCTCTTCCAACGTGTGCACGTACACCAGCGACTCCCAGGACCCGAT
CCCACTGATGCTCGACACACCTGTGAAGCTCCACCCTAGAGCTCCGTACA
CGCTTCTCATGTGTGTAAACGGCAAGTGCGCCCCCTGCGGTCGGGGCGGC
GAAACCTCTGCCACGCACACTGATTCTGGCGTCTCCTTCGAGTTCTCTGC
ATCGCCCTTGTCTTCCAACGGCACCAGTGTCAGCTCAGGCCAACTTCCAA
CCGTGTACTTCTACGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81591:383..802-

>mRNA_M-pyrifera_M_contig81591.19091.1 ID=mRNA_M-pyrifera_M_contig81591.19091.1|Name=mRNA_M-pyrifera_M_contig81591.19091.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig81591:383..802- (Macrocystis pyrifera P11B4 male)
AGCTGTGATGCGCTGACTGTGTCGGTGGACCAGCCGATTCAGCTGGCTGG
TTTCGGGGTGCATGGCAGCGCGGAAGGCGACTCGTACAATGCGTTCATCC
TGGTGGCTGAAGGCTCTCCCAGCAGCACATCGGAGCTATCGGGGAGCAAC
GTGCTCTCTTCCAACGTGTGCACGTACACCAGCGACTCCCAGGACCCGAT
CCCACTGATGCTCGACACACCTGTGAAGCTCCACCCTAGAGCTCCGTACA
CGCTTCTCATGTGTGTAAACGGCAAGTGCGCCCCCTGCGGTCGGGGCGGC
GAAACCTCTGCCACGCACACTGATTCTGGCGTCTCCTTCGAGTTCTCTGC
ATCGCCCTTGTCTTCCAACGGCACCAGTGTCAGCTCAGGCCAACTTCCAA
CCGTGTACTTCTACGCGTAGAGCTGTGATGCGCTGACTGTGTCGGTGGAC
CAGCCGATTCAGCTGGCTGGTTTCGGGGTGCATGGCAGCGCGGAAGGCGA
CTCGTACAATGCGTTCATCCTGGTGGCTGAAGGCTCTCCCAGCAGCACAT
CGGAGCTATCGGGGAGCAACGTGCTCTCTTCCAACGTGTGCACGTACACC
AGCGACTCCCAGGACCCGATCCCACTGATGCTCGACACACCTGTGAAGCT
CCACCCTAGAGCTCCGTACACGCTTCTCATGTGTGTAAACGGCAAGTGCG
CCCCCTGCGGTCGGGGCGGCGAAACCTCTGCCACGCACACTGATTCTGGC
GTCTCCTTCGAGTTCTCTGCATCGCCCTTGTCTTCCAACGGCACCAGTGT
CAGCTCAGGCCAACTTCCAACCGTGTACTTCTACGCGTAG
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