mRNA_M-pyrifera_M_contig8154.19077.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8154.19077.1
Unique NamemRNA_M-pyrifera_M_contig8154.19077.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: D7G786_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G786_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 2.020e-91
Identity = 232/294 (78.91%), Postives = 241/294 (81.97%), Query Frame = 1 
Query:    1 MAGARGDFHGTMRAFFDRNLRFWHRTWLEDRRXXXXXXXXXXXXXXXXXXXXXXXXXXGDSMDVS------AASDKGXXXXXXXXKEGGVQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGEE---DDFSDMNREELLELWGVLRRLGWFSLLQDAFSGVTFSHVLAYVRKSGGGVGTGREGGGHGAAYGWAQRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDPK 855
            MAGARGDFHGTMRAFFDRNLRFWHR+WLE+R      XXXXXXXXXXXXXXXXXX   GD MDVS         ++G      XX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G     DDFSDM+REEL  LWGVLRRLGWFSLLQDAFSGV FS+VLAYVR+SGGG G G    G  AAYGW QRLGLAVHEAFCSARIAELFDIIADYPDS VAIGELKTALGVTQQHQRLAVLLRESVR+RLLHPGANTHQI+DVYIATIKVLRILD K
Sbjct:    1 MAGARGDFHGTMRAFFDRNLRFWHRSWLEER------XXXXXXXXXXXXXXXXXXVEGGDGMDVSDDDLGAGEENRGSDGEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGXXXXGDDFSDMSREELSALWGVLRRLGWFSLLQDAFSGVMFSNVLAYVRRSGGGXG-GVPVDGSSAAYGWKQRLGLAVHEAFCSARIAELFDIIADYPDSGVAIGELKTALGVTQQHQRLAVLLRESVRRRLLHPGANTHQIMDVYIATIKVLRILDRK 287
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A7S2NZF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZF2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.170e-24
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:  586 WAQRLGLAVHEAFCSARIAE-LFDIIADYPDSAVAIGELKTAL-----GVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            W  +L LAV EAFC+ RI E +FDII DYPDS  A+ EL+ AL     G+    +RL V LR S+RKRLLHPGA T QI+DVYIATIKVLR++DP
Sbjct:   75 WDNQLNLAVSEAFCNLRITEEMFDIITDYPDSETAVIELRDALFRFHTGMHYFSKRLTVELRASLRKRLLHPGAQTSQILDVYIATIKVLRLIDP 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A7S4UVG3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UVG3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.000e-23
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  586 WAQRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            W + L  A  E FC  RI E+FDI+ADYPDS  AI EL  AL  T+ H +LAV LR+S+++RL+HPGANT QIIDVYI TIKV R +DP
Sbjct:  227 WDRTLDYAASECFCEIRIKEIFDIVADYPDSLPAIRELAQALDRTRMHGKLAVELRKSLKRRLIHPGANTSQIIDVYINTIKVFREIDP 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A7S2WSZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSZ1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.230e-23
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:  568 HGAAYGWAQRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            HG+   W   +   V++ FCS+RI EL+DIIA++PDSA A+ EL+ AL  TQQH  LA  LRE++ +R LHPGA T QII++YI+TIKVLR+LDP
Sbjct:  129 HGSPEEWEDFVENTVYDMFCSSRIHELYDIIAEFPDSASAVLELRGALTKTQQHAVLASRLRETLTRRSLHPGATTTQIIEIYISTIKVLRLLDP 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A7S4RA98_9STRA (Anaphase-promoting complex subunit 2 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RA98_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.350e-22
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  586 WAQRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            W + L  A  E FC  RI E+FDI+ADYPDS  AI EL  AL  T+ H +LAV LR+S+++RL+HPGANT QIIDVYI TIKV R +DP
Sbjct:  227 WDRTLDYAASECFCEIRIKEIFDIVADYPDSLPAIRELAQALDRTRMHGKLAVELRKSLKRRLIHPGANTSQIIDVYINTIKVFREIDP 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A7S2G590_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G590_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.090e-21
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:  583 GWAQRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            GW   L L +H+ FC AR   +FD+I ++PDS VA+ EL+ A+  T Q+  LA  LR +++KR+LHPGA T Q+I++YI+TIKV+R+LDP
Sbjct:   90 GWRASLSLTLHQLFCEARTDSIFDMITEFPDSIVAVKELRDAVEYTAQYTPLAQALRSTLQKRILHPGATTTQVIEIYISTIKVVRLLDP 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: F0YL58_AURAN (Anaphase-promoting complex subunit 2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL58_AURAN)

HSP 1 Score: 102 bits (254), Expect = 9.020e-21
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:  598 LGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDPK 855
            + L + E +  ARI EL+DIIAD+P+S  A+ EL+  L  TQQHQ LA  LR ++++RLLH GAN+ QIIDVYI+TIKVLRILDP+
Sbjct:  205 VNLVIDENYVRARINELYDIIADFPESMCAVNELRATLSRTQQHQLLARSLRSTLQRRLLHSGANSSQIIDVYISTIKVLRILDPR 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A1E7F4J4_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4J4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.000e-20
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:  586 WAQRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            W+ RL  AV E FC  R+ E+F+++A+YPDS  A+ ELK  L +T+ HQ +A  L+ ++ KRL HPGANT QIIDVYI TIKV R +DP
Sbjct:   30 WSSRLDFAVSECFCLVRMEEIFELVAEYPDSHTAVVELKKVLEITRMHQAMARALKIALVKRLNHPGANTSQIIDVYINTIKVFREIDP 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.270e-20
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:  700 KTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDPK 855
            +TALGVTQQHQRLAVLLRESVR+RLLHPGANTHQIIDVYIATIKVLRILDPK
Sbjct:    4 QTALGVTQQHQRLAVLLRESVRRRLLHPGANTHQIIDVYIATIKVLRILDPK 55
[Close]
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Match: A0A7S1TR82_9STRA (Anaphase-promoting complex subunit 2 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR82_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.220e-20
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:  592 QRLGLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLLRESVRKRLLHPGANTHQIIDVYIATIKVLRILDP 852
            QR+   ++E FC+ RIAE+F+II D+PDSA A+ ELK AL   +   +LA  LR + + RLLHPGA T+Q+IDVYIAT+K LR+LDP
Sbjct:  246 QRVEFLLYERFCTVRIAEMFEIITDFPDSACAVEELKVALQRARLQPQLAAALRGAFQARLLHPGATTNQVIDVYIATVKSLRLLDP 332
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8154.19077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G786_ECTSI2.020e-9178.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2NZF2_9STRA5.170e-2461.05Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4UVG3_9STRA7.000e-2360.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2WSZ1_9STRA8.230e-2356.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4RA98_9STRA1.350e-2260.67Anaphase-promoting complex subunit 2 n=2 Tax=Dityl... [more]
A0A7S2G590_9STRA1.090e-2151.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YL58_AURAN9.020e-2159.30Anaphase-promoting complex subunit 2 n=1 Tax=Aureo... [more]
A0A1E7F4J4_9STRA1.000e-2055.06Anaphase-promoting complex subunit 2 n=1 Tax=Fragi... [more]
A0A6H5KJM3_9PHAE1.270e-2096.15Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A7S1TR82_9STRA3.220e-2056.32Anaphase-promoting complex subunit 2 n=4 Tax=Phaeo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8154contigM-pyrifera_M_contig8154:8711..11899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.9
Seed ortholog evalue2.6e-75
Seed eggNOG ortholog2880.D7G786
Preferred nameAPC2
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG2165@1,KOG2165@2759
Ec32 ortholog descriptionSubunit of the Anaphase Promoting Complex
Ec32 orthologEc-04_003800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons4
Model size855
Cds size855
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8154.19077.1prot_M-pyrifera_M_contig8154.19077.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8154 8711..11899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.0355866-CDS-M-pyrifera_M_contig8154:8710..89991622816722.0355866-CDS-M-pyrifera_M_contig8154:8710..8999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 8711..8999 +
1692278140.307369-CDS-M-pyrifera_M_contig8154:8710..89991692278140.307369-CDS-M-pyrifera_M_contig8154:8710..8999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 8711..8999 +
1622816722.0488744-CDS-M-pyrifera_M_contig8154:9668..99091622816722.0488744-CDS-M-pyrifera_M_contig8154:9668..9909Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 9669..9909 +
1692278140.3202543-CDS-M-pyrifera_M_contig8154:9668..99091692278140.3202543-CDS-M-pyrifera_M_contig8154:9668..9909Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 9669..9909 +
1622816722.0615003-CDS-M-pyrifera_M_contig8154:11125..112971622816722.0615003-CDS-M-pyrifera_M_contig8154:11125..11297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 11126..11297 +
1692278140.329927-CDS-M-pyrifera_M_contig8154:11125..112971692278140.329927-CDS-M-pyrifera_M_contig8154:11125..11297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 11126..11297 +
1622816722.07643-CDS-M-pyrifera_M_contig8154:11746..118991622816722.07643-CDS-M-pyrifera_M_contig8154:11746..11899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 11747..11899 +
1692278140.3420656-CDS-M-pyrifera_M_contig8154:11746..118991692278140.3420656-CDS-M-pyrifera_M_contig8154:11746..11899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8154 11747..11899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8154.19077.1

>prot_M-pyrifera_M_contig8154.19077.1 ID=prot_M-pyrifera_M_contig8154.19077.1|Name=mRNA_M-pyrifera_M_contig8154.19077.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=285bp
MAGARGDFHGTMRAFFDRNLRFWHRTWLEDRRRQRRQQRRRGSGTRDTEE
EEEEEEEEGDSMDVSAASDKGMDVSAASDKEGGVQGGGGAMEEDSGRDEE
EEKEEEEDDEEEEEEEEEEEEEEEEGSDGEEDDFSDMNREELLELWGVLR
RLGWFSLLQDAFSGVTFSHVLAYVRKSGGGVGTGREGGGHGAAYGWAQRL
GLAVHEAFCSARIAELFDIIADYPDSAVAIGELKTALGVTQQHQRLAVLL
RESVRKRLLHPGANTHQIIDVYIATIKVLRILDPK
back to top

mRNA from alignment at M-pyrifera_M_contig8154:8711..11899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8154.19077.1 ID=mRNA_M-pyrifera_M_contig8154.19077.1|Name=mRNA_M-pyrifera_M_contig8154.19077.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3189bp|location=Sequence derived from alignment at M-pyrifera_M_contig8154:8711..11899+ (Macrocystis pyrifera P11B4 male)
ATGGCCGGGGCGAGGGGGGATTTCCATGGCACCATGCGGGCGTTTTTCGA
TCGGAATCTGAGGTTCTGGCACCGCACTTGGTTGGAGGATCGGCGGCGGC
AGCGGCGGCAGCAGCGGCGGCGGGGTTCTGGGACGCGTGACACAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGACAGCATGGATGTGTCTGCTGC
TAGTGATAAGGGCATGGATGTGTCTGCTGCTAGTGATAAGGAAGGCGGGG
TGCAAGGAGGGGGTGGTGCTATGGAGGAAGACAGTGGAAGTGGAGAGCCG
GGGGGAGAGGTGGAGCAGAGTTTTCAGGTACGAAGCAGACATACCTGCCC
CCCCCCCCCCCCTTTTTGGTCTTTTCGAAACAACTAGTACCAGGTATACC
GTATCTGATAGTACCTTACCAGGTAGTAGTTCGTATTACGGGGGACCATA
GTAAATAGGACCAAATATTGTTAGTAAAAATATATAAATGTATAGGTTTT
TGTGTGTTCTTTAGGACATATTTACTATGGACCCCTGTAATAGTTTTTAT
TAGTAGCGCCGTACCAAGTAGTACTTGTAACATAGAAGGATAAACCGACT
GGTGGTACGATCTGCGACACAGGTGCGGATGTAGAGATATAGGCCGCAGG
AATCGGAAGAATAGCGACACCGTCGATATCGAAGCCCGGTTTCCTTGAGA
TATCACCGCTGCAATGCCTCGGCCTCTGGGGGGGGGCGGGGGGTAAGTGT
TAAGGGTCCACTGGTCCACAGCGGCAGCGTACACATCTCAAAACCCGCAA
GCATACACCGCGCCGCAAGGAATACATACATGAATGTGAGCAAGTTCGCA
TGCCTCCCTTCCCCCCCCCCCGCCCTCGTAATGCTTCCATGCGTGTCCCG
TCCGGCGTACAAATAACACGCCCACCACAGGGAAGGGAAGAAGAGGGGAA
AGGCGAAGGGGACGAGGAGGAGGAGAAGGAGGAGGAGGAGGACGACGAAG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCAGC
GATGGTGAGGAGGACGATTTTTCGGACATGAACCGGGAGGAGCTGTTGGA
GCTGTGGGGCGTTCTGAGGCGGCTGGGCTGGTTCTCGCTCCTGCAGGACG
CGTTTTCTGGGGTGACTTTTTCTCACGTGCTCGCGTACGTCAGGAAAAGG
TGCGCCGGACGGGCCCTCCTCGCCTTGCCTTGCCTTGCCTTGCCTTGAGT
TGCGTTGCGTTGCCTCGCCTCGCCTCGCCTCGCCTCGCCTCGCCTTGCCT
CGCCTTGTCTTGCCGCGCCTTGTCTTGCCTTGCCTTCCCTTGCCTTGCCT
TGCCTTGCCCTGCCCTGCCTTGCCCTGCCCTGCCCTGCCTTGCCTTGCCT
TGCCTTGCCTTTGATTGAGGCGGAGGAGGCGTGTCTTGTTCGTGCCCCTG
CTGGGTGTACCTTTTTTCCCCCTTTCAAGTATGTGCGTTGCGCTTTTTAG
TTTTTTTTTCGCGCAGGGAGAACTGTGATAAGGGCCGACGAGTTGCAGCG
TCAATTTTTGTTTTTGGTCTCATACCTGGTACCAGGTATGTAGGTTGATT
GCTGTATTCCGTCATAAAGTTATTTTTTTCTTGTCAGAGTTCGTTTGAGC
CGGCGTTCCGACCGCGGGCTCATCTTTTAGATTCTGAATTTGACGTAGTT
TAACCTCGGCCATCGTCAAATGGGCGTTGCATTTTTTGGCTCATTTTTTT
CGTCTTCTTGCGAGCCTGGGAGTAGACGTACCGTCACGATACACGTCATC
TGGCGCTTGGCGGGAGGCAGCCACTGAACTGATGAGATCATTGCGGGCGC
GAGGGAACCGGGTCACCAAGAACCCGCCCAACACTCTCGAGCAAACGAGC
CTAAAATCAAACAAGCCATCGAACGAACGAGAGAGAGGTCATTTGCAGGC
ACGTTGAGAAACATATTCCTGCCTAACAGCCGTTCACAACCCCGAACATC
ATCCAGGCAGACGAGATTAAGCAAGCAATGCAACGAACGAACAAACGAAC
AGCTGAACCTGCAGTAGTACTTAGTAACAACACACCAAGCCTTAACCTGA
AACCGAAAAAAAAGCTTGGAACTAAAATCTAAACCCTAAACCTACACTGA
AACCTAACCGCAGATGCGACGGCGTGTACGACGAGCCGGTGTTGGAGCAC
GTAATGGCGTGGAAGGACCAAGTGCTCATGCGATGGATAGCTCTCCTCCT
CGACGACGGCAACCCTTCGGCCCTCCACACGACCACCACTACCACCACGG
ACGCTAACGGTAACGGCAAGCTCTACCGCACCGGCGAAGCACGGCAGGAG
CCACGACTTTCAACGGCCGCGTCTTTTTCCAGCGACACGGGCGTGCCCGC
GGTGCCCGGCGGCAGTGGAGGCGGGGTGGGCACGGGGAGGGAGGGGGGGG
GGCATGGTGCCGCTTACGGGTGGGCGCAACGGCTGGGTCTTGCGGTGCAC
GAGGCGTTTTGTTCGGCTAGGATAGCGGAACTGTTCGATATTATCGCGGA
CTATCCGGACAGCGCCGTGGCAATAGGGGAGCTCAAGGTGCGGAGGGGGC
GCGGGGGGGGGGGCTGCGGGGGGAGGGAGGTAGGGAGGGAGGGAGGCACG
GAGGGCGCAAATAATTAAGAGGGCCGAGAGGAGGGATGTTTTGAGTGCGA
TGGGTTTTTGTTTGTTGGTGGGTTTCGGACAGGGGTGTAGTTGCTGCCGC
CATTGCTGTGTCGGTGCTGATTTTGACGGCCTCTGCTGCGGCCTCTGGCT
CTGTTGTTGGTGTCGTTGCTACTGCTTCGGCTGCAGCTGCAGCTGCTGGT
TGTTAATGTCGCCCATTGCTGCTGTTACTACAGTAGTGAGTGCTGCTGCT
GCTGCTGCTGCTGCTGCTTGTACGAAGTGCATAGCACCCGGTGCCGCCAG
AAAGCAAACGGATTTCGGCGCTACCGTACCCTCCCTCTCTCCCTCCCCAT
CCCCGCCCAATACCCCCGCAAAACACCTTCTTTCAGACAGCCCTCGGGGT
GACCCAGCAGCACCAGCGGCTGGCCGTGCTGTTGCGCGAGAGCGTAAGGA
AGCGTTTGCTACACCCGGGGGCCAATACCCACCAGATCATCGACGTCTAC
ATCGCCACTATTAAGGTCCTCCGCATCCTCGACCCCAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8154:8711..11899+

>mRNA_M-pyrifera_M_contig8154.19077.1 ID=mRNA_M-pyrifera_M_contig8154.19077.1|Name=mRNA_M-pyrifera_M_contig8154.19077.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1710bp|location=Sequence derived from alignment at M-pyrifera_M_contig8154:8711..11899+ (Macrocystis pyrifera P11B4 male)
ATGGCCGGGGCGAGGGGGGATTTCCATGGCACCATGCGGGCGTTTTTCGA
TCGGAATCTGAGGTTCTGGCACCGCACTTGGTTGGAGGATCGGCGGCGGC
AGCGGCGGCAGCAGCGGCGGCGGGGTTCTGGGACGCGTGACACAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGACAGCATGGATGTGTCTGCTGC
TAGTGATAAGGGCATGGATGTGTCTGCTGCTAGTGATAAGGAAGGCGGGG
TGCAAGGAGGGGGTGGTGCTATGGAGGAAGACAGTGGAAATGGCCGGGGC
GAGGGGGGATTTCCATGGCACCATGCGGGCGTTTTTCGATCGGAATCTGA
GGTTCTGGCACCGCACTTGGTTGGAGGATCGGCGGCGGCAGCGGCGGCAG
CAGCGGCGGCGGGGTTCTGGGACGCGTGACACAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGGGACAGCATGGATGTGTCTGCTGCTAGTGATAAGG
GCATGGATGTGTCTGCTGCTAGTGATAAGGAAGGCGGGGTGCAAGGAGGG
GGTGGTGCTATGGAGGAAGACAGTGGAAGGGACGAGGAGGAGGAGAAGGA
GGAGGAGGAGGACGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGCAGCGATGGTGAGGAGGACGATTTTTCGGACATG
AACCGGGAGGAGCTGTTGGAGCTGTGGGGCGTTCTGAGGCGGCTGGGCTG
GTTCTCGCTCCTGCAGGACGCGTTTTCTGGGGTGACTTTTTCTCACGTGC
TCGCGTACGTCAGGAAAAGGGGACGAGGAGGAGGAGAAGGAGGAGGAGGA
GGACGACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGCAGCGATGGTGAGGAGGACGATTTTTCGGACATGAACCGGGAG
GAGCTGTTGGAGCTGTGGGGCGTTCTGAGGCGGCTGGGCTGGTTCTCGCT
CCTGCAGGACGCGTTTTCTGGGGTGACTTTTTCTCACGTGCTCGCGTACG
TCAGGAAAAGTGGAGGCGGGGTGGGCACGGGGAGGGAGGGGGGGGGGCAT
GGTGCCGCTTACGGGTGGGCGCAACGGCTGGGTCTTGCGGTGCACGAGGC
GTTTTGTTCGGCTAGGATAGCGGAACTGTTCGATATTATCGCGGACTATC
CGGACAGCGCCGTGGCAATAGGGGAGCTCAAGTGGAGGCGGGGTGGGCAC
GGGGAGGGAGGGGGGGGGGCATGGTGCCGCTTACGGGTGGGCGCAACGGC
TGGGTCTTGCGGTGCACGAGGCGTTTTGTTCGGCTAGGATAGCGGAACTG
TTCGATATTATCGCGGACTATCCGGACAGCGCCGTGGCAATAGGGGAGCT
CAAGACAGCCCTCGGGGTGACCCAGCAGCACCAGCGGCTGGCCGTGCTGT
TGCGCGAGAGCGTAAGGAAGCGTTTGCTACACCCGGGGGCCAATACCCAC
CAGATCATCGACGTCTACATCGCCACTATTAAGGTCCTCCGCATCCTCGA
CCCCAAGACAGCCCTCGGGGTGACCCAGCAGCACCAGCGGCTGGCCGTGC
TGTTGCGCGAGAGCGTAAGGAAGCGTTTGCTACACCCGGGGGCCAATACC
CACCAGATCATCGACGTCTACATCGCCACTATTAAGGTCCTCCGCATCCT
CGACCCCAAG
back to top