mRNA_M-pyrifera_M_contig81518.19073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81518.19073.1
Unique NamemRNA_M-pyrifera_M_contig81518.19073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: D7FVZ3_ECTSI (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.720e-21
Identity = 43/60 (71.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    4 IRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            +RAVIVENTF+SVSHMVD+++P+L  IKWLVLRL+W++E+KARRLTRPVLYISG +  L+
Sbjct:  177 VRAVIVENTFISVSHMVDKLMPMLSGIKWLVLRLRWDNEEKARRLTRPVLYISGLKDELI 236          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: A0A662WQ66_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ66_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.340e-11
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 IRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            + AVI+ENTFLS+S MVD ++P L  +K LVLRL WNSEQ  ++L +P+L+I+G +  L+
Sbjct:  209 VAAVILENTFLSISAMVDALMPFLTYVKPLVLRLDWNSEQSIQKLPQPILFIAGLQDELV 268          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: K3XBT1_GLOUD (AB hydrolase-1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBT1_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 4.980e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            KI AVI+ENTFLS+S MVD ++P L   K +VLR+ WNSE+   +LT P+L+++G +  L+
Sbjct:  187 KIAAVILENTFLSISSMVDSLMPFLSYFKPIVLRIDWNSEKAMPKLTHPILFVAGMQDELV 247          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: A0A662Y6B3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6B3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.980e-11
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            ++ AVI+ENTFLS+S MVD ++P L  +K LVLRL WNSEQ  ++L  P+L+I+G +  L+
Sbjct:  210 EVAAVILENTFLSISAMVDALMPFLTYVKPLVLRLDWNSEQAIQKLPHPILFIAGLQDELV 270          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: M4BQL6_HYAAE (AB hydrolase-1 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQL6_HYAAE)

HSP 1 Score: 65.1 bits (157), Expect = 6.040e-11
Identity = 29/61 (47.54%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            ++ AVI+EN+FLS+S MVD ++P L  +K+LVLR+ WN+E   R++T+P+L+I+G +  L+
Sbjct:  137 RVAAVILENSFLSISAMVDALMPFLTYVKFLVLRMDWNNELAIRKVTQPILFIAGMQDELV 197          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: A0A6G0X0E5_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0E5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.790e-10
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            KI  +IVENTFLS+S MVD+V+P L  IK +VL + WN+E++ R +T P+L+++G+   L+
Sbjct:  188 KIAGLIVENTFLSISSMVDQVMPWLTYIKPIVLAIDWNNERRIRGVTLPILFVAGERDELV 248          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: H3H829_PHYRM (AB hydrolase-1 domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H829_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 7.170e-10
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            ++ AV++ENTFLS+S MVD ++P L  +K LVLR+ WNSE   ++L +P+L+I+G +  L+
Sbjct:  187 RVAAVVLENTFLSISAMVDALMPFLTYVKPLVLRMDWNSELAIQKLKQPILFIAGLQDELV 247          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: W2QQ06_PHYPN (AB hydrolase-1 domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=W2QQ06_PHYPN)

HSP 1 Score: 62.4 bits (150), Expect = 7.490e-10
Identity = 27/61 (44.26%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            ++ AV++ENTFLS+S MVD ++P L  +K LVLR+ WN+E+  +++ +P+L+I+G +  L+
Sbjct:  211 RVAAVVLENTFLSISAMVDALMPFLSYVKPLVLRMDWNNERAIQKIKQPILFIAGMQDELV 271          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: W4H1X2_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1X2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.090e-9
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISGKEGLLL 183
            K+  +IVENTFLS+S MVD+V+P L  +K +VLRL W++E +   LT P+L+++G+   L+
Sbjct:  111 KVAGLIVENTFLSISAMVDQVMPWLSYVKPVVLRLDWSNEGRIPTLTHPILFVAGERDELV 171          
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Match: F0WP23_9STRA (Serine protease family S09X putative n=6 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WP23_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-9
Identity = 26/55 (47.27%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPVLYISG 165
            ++  VI+ENTFLS+S M+D V+P L+  K +VLR++WN+E++  +L++P+L I+G
Sbjct:  557 EVAGVILENTFLSISSMIDAVMPALRYFKSIVLRIEWNNEERVTKLSQPILLIAG 611          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81518.19073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ3_ECTSI9.720e-2171.67Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
A0A662WQ66_9STRA4.340e-1153.33Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
K3XBT1_GLOUD4.980e-1150.82AB hydrolase-1 domain-containing protein n=1 Tax=G... [more]
A0A662Y6B3_9STRA5.980e-1152.46Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
M4BQL6_HYAAE6.040e-1147.54AB hydrolase-1 domain-containing protein n=1 Tax=H... [more]
A0A6G0X0E5_9STRA3.790e-1049.18Hydrolase_4 domain-containing protein n=1 Tax=Apha... [more]
H3H829_PHYRM7.170e-1047.54AB hydrolase-1 domain-containing protein n=2 Tax=P... [more]
W2QQ06_PHYPN7.490e-1044.26AB hydrolase-1 domain-containing protein n=34 Tax=... [more]
W4H1X2_9STRA1.090e-947.54Hydrolase_4 domain-containing protein n=1 Tax=Apha... [more]
F0WP23_9STRA1.090e-947.27Serine protease family S09X putative n=6 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81518contigM-pyrifera_M_contig81518:581..769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.6e-17
Seed eggNOG ortholog2880.D7FVZ3
Preferred namebem46
KEGG koko:K06889
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0005886,GO:0007275,GO:0008150,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0019866,GO:0022622,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0071944,GO:0099402
EggNOG free text desc.protein depalmitoylation
EggNOG OGsCOG1073@1,KOG4391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.8810985-CDS-M-pyrifera_M_contig81518:580..7691622816721.8810985-CDS-M-pyrifera_M_contig81518:580..769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81518 581..769 -
1692278140.2102628-CDS-M-pyrifera_M_contig81518:580..7691692278140.2102628-CDS-M-pyrifera_M_contig81518:580..769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81518 581..769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81518.19073.1prot_M-pyrifera_M_contig81518.19073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81518 581..769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81518.19073.1

>prot_M-pyrifera_M_contig81518.19073.1 ID=prot_M-pyrifera_M_contig81518.19073.1|Name=mRNA_M-pyrifera_M_contig81518.19073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
KIRAVIVENTFLSVSHMVDEVLPLLKSIKWLVLRLKWNSEQKARRLTRPV
LYISGKEGLLLQ*
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mRNA from alignment at M-pyrifera_M_contig81518:581..769-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81518.19073.1 ID=mRNA_M-pyrifera_M_contig81518.19073.1|Name=mRNA_M-pyrifera_M_contig81518.19073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig81518:581..769- (Macrocystis pyrifera P11B4 male)
AAGATTCGTGCGGTGATCGTGGAGAACACCTTCCTCAGCGTGTCGCACAT GGTTGACGAAGTGCTCCCCTTGCTCAAGAGCATCAAGTGGCTCGTGCTGA GGCTCAAGTGGAATAGCGAACAGAAGGCCAGGAGGCTCACGAGGCCGGTG CTGTACATCTCGGGTAAGGAGGGGCTGCTGCTACAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81518:581..769-

>mRNA_M-pyrifera_M_contig81518.19073.1 ID=mRNA_M-pyrifera_M_contig81518.19073.1|Name=mRNA_M-pyrifera_M_contig81518.19073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig81518:581..769- (Macrocystis pyrifera P11B4 male)
AAGATTCGTGCGGTGATCGTGGAGAACACCTTCCTCAGCGTGTCGCACAT
GGTTGACGAAGTGCTCCCCTTGCTCAAGAGCATCAAGTGGCTCGTGCTGA
GGCTCAAGTGGAATAGCGAACAGAAGGCCAGGAGGCTCACGAGGCCGGTG
CTGTACATCTCGGGTAAGGAGGGGCTGCTGCTACAGTAGAAGATTCGTGC
GGTGATCGTGGAGAACACCTTCCTCAGCGTGTCGCACATGGTTGACGAAG
TGCTCCCCTTGCTCAAGAGCATCAAGTGGCTCGTGCTGAGGCTCAAGTGG
AATAGCGAACAGAAGGCCAGGAGGCTCACGAGGCCGGTGCTGTACATCTC
GGGTAAGGAGGGGCTGCTGCTACAGTAG
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