mRNA_M-pyrifera_M_contig815.19069.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig815.19069.1
Unique NamemRNA_M-pyrifera_M_contig815.19069.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig815.19069.1 vs. uniprot
Match: A0A6H5JLK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK5_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.380e-38
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 3 
Query:    9 KEFFQRTTLSGLALFMSTCLLLGQLFFGHWPLWLAIGPGYLLWVALDDTLKRSRNASAKQRDQFRGQWADACRGDSDAVWRKRAAARSKARNI 287
            KEFFQRT LSGLALF+S CL+LGQL F  WP+WLA GP YL+WV LDDTL+RSRN SAKQRDQ+R QWAD CRGD DA+WRKRAAAR  AR +
Sbjct:  372 KEFFQRTALSGLALFLSMCLVLGQLIFNSWPIWLATGPAYLVWVGLDDTLRRSRNRSAKQRDQWREQWADVCRGDGDAIWRKRAAARVMARRL 464
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BLAST of mRNA_M-pyrifera_M_contig815.19069.1 vs. uniprot
Match: A0A6H5K1U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.090e-34
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 3 
Query:   21 QRTTLSGLALFMSTCLLLGQLFFGHWPLWLAIGPGYLLWVALDDTLKRSRNASAKQRDQFRGQWADACRGDSDAVWRKRAAARSKARNISGD 296
            +RT LSGLALF+STCL+L QL F  WP WLA GP YL WVALDD+L+RSR  SAKQRD +RGQWAD CRGD D VWRKR AAR +AR + GD
Sbjct:  191 KRTALSGLALFLSTCLVLEQLIFRSWPAWLAAGPAYLAWVALDDSLRRSRGKSAKQRDVWRGQWADVCRGDGDPVWRKRVAARLRARKLRGD 282
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BLAST of mRNA_M-pyrifera_M_contig815.19069.1 vs. uniprot
Match: D7FXE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.140e-6
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 3 
Query:    9 KEFFQRTTLSGLALFMSTCLLLGQLFFGHWPLWLAIG 119
            KE FQRT LSGLALF+S CL+LGQL F  WP+WLA G
Sbjct:  335 KELFQRTALSGLALFLSMCLVLGQLIFNSWPIWLATG 371
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig815.19069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLK5_9PHAE3.380e-3875.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1U7_9PHAE1.090e-3470.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXE6_ECTSI3.140e-672.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig815contigM-pyrifera_M_contig815:719..2050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002920.1
Exons2
Model size881
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig815.19069.1prot_M-pyrifera_M_contig815.19069.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig815 1292..1997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.6714015-UTR-M-pyrifera_M_contig815:718..12911622816721.6714015-UTR-M-pyrifera_M_contig815:718..1291Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig815 719..1291 -
1692278140.0859442-UTR-M-pyrifera_M_contig815:718..12911692278140.0859442-UTR-M-pyrifera_M_contig815:718..1291Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig815 719..1291 -
1622816721.7077012-UTR-M-pyrifera_M_contig815:1997..20501622816721.7077012-UTR-M-pyrifera_M_contig815:1997..2050Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig815 1998..2050 -
1692278140.1124773-UTR-M-pyrifera_M_contig815:1997..20501692278140.1124773-UTR-M-pyrifera_M_contig815:1997..2050Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig815 1998..2050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.6845412-CDS-M-pyrifera_M_contig815:1291..14821622816721.6845412-CDS-M-pyrifera_M_contig815:1291..1482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig815 1292..1482 -
1692278140.0956452-CDS-M-pyrifera_M_contig815:1291..14821692278140.0956452-CDS-M-pyrifera_M_contig815:1291..1482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig815 1292..1482 -
1622816721.6960566-CDS-M-pyrifera_M_contig815:1933..19971622816721.6960566-CDS-M-pyrifera_M_contig815:1933..1997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig815 1934..1997 -
1692278140.1042092-CDS-M-pyrifera_M_contig815:1933..19971692278140.1042092-CDS-M-pyrifera_M_contig815:1933..1997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig815 1934..1997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig815.19069.1

>prot_M-pyrifera_M_contig815.19069.1 ID=prot_M-pyrifera_M_contig815.19069.1|Name=mRNA_M-pyrifera_M_contig815.19069.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MSTCLLLGQLFFGHWPLWLAIGPGYLLWVALDDTLKRSRNASAKQRDQFR
GQWADACRGDSDAVWRKRAAARSKARNISGDEIR*
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mRNA from alignment at M-pyrifera_M_contig815:719..2050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig815.19069.1 ID=mRNA_M-pyrifera_M_contig815.19069.1|Name=mRNA_M-pyrifera_M_contig815.19069.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig815:719..2050- (Macrocystis pyrifera P11B4 male)
AGTTGGCTAAGGAATTTTTTCAACGGACAACCCTGTCGGGGCTTGCGCTT
TTCATGTCGACTTGCTTGTTGCTGGGGCAACTTTTCTTTGGACATTGGCC
ACTTTGGCTAGCGATCGGTGAGCAGCGTGCCGTGTTTTGTCACATAGTAC
TGCTGCAAGGTATTCTCGCTTTAGCGGAATCCAGTGCCTTATTGCTTCAT
TCTTTCACATTTTCCCTGCAGGGTACGGTCTTCATAGCGTTGTGTTTCTT
CGTGCCCTTGCGTTGCACAATACTACTCCACGGTTGCCGCGTTGGGGAGA
CTTGGCGTGTCAAGATGGCCGGACATACGTCAAGAACCAAACCACAGCCT
GAGGACTACTTTTGAACGGATACCTTATAATCATGAACGCGTATCCTAGG
ATAACTTGCTCTGTGTAGGAGTCCAGAATCTGCAAATGATTGTTTCCATG
GTGCCCTGAAATGTGGGGCATACGCAACTTCCACCAGGCTCCGCCTGTTC
GCTGTCCACCGTATGTTGCGCTAACCCCGTAATGTCTTGCCCCCGTTAAA
CACCTTCACTTATCTCAGGCCCGGGGTATTTACTTTGGGTGGCTCTTGAT
GACACGCTGAAACGTTCTCGAAACGCGTCGGCCAAGCAGCGGGACCAGTT
CAGGGGGCAATGGGCGGATGCGTGTCGTGGGGATAGTGACGCAGTGTGGA
GAAAGAGGGCCGCGGCGAGGTCGAAGGCTCGAAATATTTCTGGCGATGAA
ATCAGATGATGGACGAGTGACAAATGGTCGTTCAAGTTCGGCAAGAAGAA
AATTGATGTTGAGGCACTTACTACTGTAGTGCAGATTTCGACGAGCAGGT
TAGCAACGCTTTTTTTAGGTCTTCAGAATTCTGCTTAAGGGAGATCGTGG
TGTGTACGTCACTCAGTGTTTCTGTATTTTATGTGAACAGGTGAGGCGTC
AAACCTATCGTGCAGCCTAGGTACACCATTACTTTGACAAGCGCGTTATT
GCAACAAGAATGGCAAACGAAAGCAGTCATGTGATTAATATTTGACGGCG
GCACTCGGCGATAGGCAGGGTTCAAAACGACCCAGGCCCTATGTAGGTGA
CATGATACAACAATTGTAGCTTCCCTACTTATTGTTCAGTGTATTCAGTG
CCGCTTTGAGAGTCGCGGTACTGCGATCACTGCGTTAGTCGGGGCGGATA
GGTTGATACAAGGCGAACAGTGTTGGCCTTTTTGTGTGCGTTGGTTGTGT
TTACCAGCGCTCCACAAGGCACAAATGAACAAGGAGCAAGCCTCACCGTT
CTGATAATTCGTGACTATCTGCAAGATACACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig815:719..2050-

>mRNA_M-pyrifera_M_contig815.19069.1 ID=mRNA_M-pyrifera_M_contig815.19069.1|Name=mRNA_M-pyrifera_M_contig815.19069.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig815:719..2050- (Macrocystis pyrifera P11B4 male)
ATGTCGACTTGCTTGTTGCTGGGGCAACTTTTCTTTGGACATTGGCCACT
TTGGCTAGCGATCGATGTCGACTTGCTTGTTGCTGGGGCAACTTTTCTTT
GGACATTGGCCACTTTGGCTAGCGATCGGCCCGGGGTATTTACTTTGGGT
GGCTCTTGATGACACGCTGAAACGTTCTCGAAACGCGTCGGCCAAGCAGC
GGGACCAGTTCAGGGGGCAATGGGCGGATGCGTGTCGTGGGGATAGTGAC
GCAGTGTGGAGAAAGAGGGCCGCGGCGAGGTCGAAGGCTCGAAATATTTC
TGGCGATGAAATCAGATGAGCCCGGGGTATTTACTTTGGGTGGCTCTTGA
TGACACGCTGAAACGTTCTCGAAACGCGTCGGCCAAGCAGCGGGACCAGT
TCAGGGGGCAATGGGCGGATGCGTGTCGTGGGGATAGTGACGCAGTGTGG
AGAAAGAGGGCCGCGGCGAGGTCGAAGGCTCGAAATATTTCTGGCGATGA
AATCAGATGA
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