mRNA_M-pyrifera_M_contig81480.19062.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81480.19062.1
Unique NamemRNA_M-pyrifera_M_contig81480.19062.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81480.19062.1 vs. uniprot
Match: W4FXP0_9STRA (Importin N-terminal domain-containing protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXP0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.480e-9
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 1 
Query:   85 EVLVAVSHRLLTVRMTDMQQSLTTVVARIMLMEPV-TAAQRLASVPSCHNGQQSLLEAVLQRWCVQQSEFYGKYCIAATMCSFCRMLESNHPPLLQVVVPGD----RTGSSRYSLRSSR------RQQHKVPLQTKLVKLLLNHHCQLQEAGAVADPD 525
            ++L AVS RL + +M  + QSL TV AR++    V T    L S+  C          VL  W   Q +FYG Y I  T+ +  ++LES HP +L +VV G+     T S++ +LRS+       RQ  +V   TKLV +L   + Q ++     D D
Sbjct:  748 QLLHAVSTRLASAQMPSLIQSLCTVYARLVHSFGVATIVDALESLGVC--------SFVLTTWIEHQGDFYGLYAIKVTLLALLKLLESQHPVVLALVVQGEMVQNHTSSTKRALRSANKAEPTSRQYTQVSFATKLVSILAMTYAQFEDEAEADDMD 897
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BLAST of mRNA_M-pyrifera_M_contig81480.19062.1 vs. uniprot
Match: A0A3R6ZVT4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZVT4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.200e-6
Identity = 54/160 (33.75%), Postives = 79/160 (49.38%), Query Frame = 1 
Query:   85 EVLVAVSHRLLTVRMTDMQQSLTTVVARIMLMEPVTAAQRLASVPSCHNGQQSL--LEAVLQRWCVQQSEFYGKYCIAATMCSFCRMLESNHPPLLQVVVPGDR---TGSSRYSLRSSRRQQH----------KVPLQTKLVKLLLNHHCQLQEAGAVAD 519
            ++L AVS RL   +M  + QSL TV AR++             V S  +  +SL  L  V+  W   Q +FYG Y +  T+ +  ++LES  P +L +VV G++   TGS+R SLRSS + Q           +V   TKLV LL   + Q ++     D
Sbjct:  277 QLLHAVSTRLGNAQMPSLIQSLCTVFARLV---------HSFGVKSILDALESLGVLSFVVTTWIEHQDDFYGLYSMKVTLLALLKLLESQDPRVLSLVVKGEQLIETGSTR-SLRSSTKAQSGSRSQQIQYSQVSFATKLVGLLAMTYVQFEDEAEADD 426
[Close]
BLAST of mRNA_M-pyrifera_M_contig81480.19062.1 vs. uniprot
Match: A0A024U6P7_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6P7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.950e-6
Identity = 54/160 (33.75%), Postives = 79/160 (49.38%), Query Frame = 1 
Query:   85 EVLVAVSHRLLTVRMTDMQQSLTTVVARIMLMEPVTAAQRLASVPSCHNGQQSL--LEAVLQRWCVQQSEFYGKYCIAATMCSFCRMLESNHPPLLQVVVPGDR---TGSSRYSLRSSRRQQH----------KVPLQTKLVKLLLNHHCQLQEAGAVAD 519
            ++L AVS RL   +M  + QSL TV AR++             V S  +  +SL  L  V+  W   Q +FYG Y +  T+ +  ++LES  P +L +VV G++   TGS+R SLRSS + Q           +V   TKLV LL   + Q ++     D
Sbjct:  747 QLLHAVSTRLGNAQMPSLIQSLCTVFARLV---------HSFGVKSILDALESLGVLSFVVTTWIEHQDDFYGLYSMKVTLLALLKLLESQDPRVLSLVVKGEQLIETGSTR-SLRSSTKAQSGSRSQQIQYSQVSFATKLVGLLAMTYVQFEDEAEADD 896
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81480.19062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
W4FXP0_9STRA2.480e-934.18Importin N-terminal domain-containing protein n=12... [more]
A0A3R6ZVT4_9STRA4.200e-633.75Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024U6P7_9STRA4.950e-633.75Importin N-terminal domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81480contigM-pyrifera_M_contig81480:34..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Exons2
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816721.3633807-CDS-M-pyrifera_M_contig81480:33..1631622816721.3633807-CDS-M-pyrifera_M_contig81480:33..163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81480 34..163 -
1692278139.9152653-CDS-M-pyrifera_M_contig81480:33..1631692278139.9152653-CDS-M-pyrifera_M_contig81480:33..163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81480 34..163 -
1622816721.3745072-CDS-M-pyrifera_M_contig81480:187..6241622816721.3745072-CDS-M-pyrifera_M_contig81480:187..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81480 188..624 -
1692278139.9302542-CDS-M-pyrifera_M_contig81480:187..6241692278139.9302542-CDS-M-pyrifera_M_contig81480:187..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81480 188..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81480.19062.1prot_M-pyrifera_M_contig81480.19062.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81480 34..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81480.19062.1

>prot_M-pyrifera_M_contig81480.19062.1 ID=prot_M-pyrifera_M_contig81480.19062.1|Name=mRNA_M-pyrifera_M_contig81480.19062.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
SSSSSTRXXXXLCGAIARFSSILAALLLEVLVAVSHRLLTVRMTDMQQSL
TTVVARIMLMEPVTAAQRLASVPSCHNGQQSLLEAVLQRWCVQQSEFYGK
YCIAATMCSFCRMLESNHPPLLQVVVPGDRTGSSRYSLRSSRRQQHKVPL
QTKLVKLLLNHHCQLQEAGAVADPDGLDGDDGDFFDISD
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mRNA from alignment at M-pyrifera_M_contig81480:34..624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81480.19062.1 ID=mRNA_M-pyrifera_M_contig81480.19062.1|Name=mRNA_M-pyrifera_M_contig81480.19062.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig81480:34..624- (Macrocystis pyrifera P11B4 male)
AGCAGCTCCAGCAGCACGCGGNNNNNNNNNNTCCTCTGTGGGGCTATCGC
TCGTTTCTCCTCCATTCTCGCGGCACTCCTCTTGGAGGTCTTGGTGGCAG
TGAGCCACCGACTGCTCACCGTCCGTATGACGGACATGCAGCAATCGCTC
ACAACGGTGGTGGCGCGGATCATGCTGATGGAGCCCGTCACTGCTGCCCA
GCGCCTAGCCTCGGTTCCCTCCTGCCACAACGGCCAGCAGAGCCTGCTCG
AGGCGGTGCTCCAGCGGTGGTGTGTGCAGCAGTCAGAGTTCTATGGCAAA
TACTGCATTGCGGCGACCATGTGCTCCTTCTGCCGCATGCTGGAGAGCAA
CCACCCTCCGCTATTGCAGGTGGTGGTGCCAGGCGACCGCACAGGCTCCT
CACGCTACTCTCTCCGCAGCAGCAGGAGGCAGCAGCAGTAGCAGGAGGAG
GAGGCGTGGAGCAAGGTGCCCCTGCAGACGAAGTTGGTGAAGCTGCTGCT
GAACCACCACTGCCAGCTGCAGGAGGCCGGCGCCGTCGCCGACCCCGACG
GCCTCGACGGCGACGACGGCGATTTCTTCGACATCAGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81480:34..624-

>mRNA_M-pyrifera_M_contig81480.19062.1 ID=mRNA_M-pyrifera_M_contig81480.19062.1|Name=mRNA_M-pyrifera_M_contig81480.19062.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig81480:34..624- (Macrocystis pyrifera P11B4 male)
AGCAGCTCCAGCAGCACGCGGNNNNNNNNNNTCCTCTGTGGGGCTATCGC
TCGTTTCTCCTCCATTCTCGCGGCACTCCTCTTGGAGGTCTTGGTGGCAG
TGAGCCACCGACTGCTCACCGTCCGTATGACGGACATGCAGCAATCGCTC
ACAACGGTGGTGGCGCGGATCATGCTGATGGAGCCCGTCACTGCTGCCCA
GCGCCTAGCCTCGGTTCCCTCCTGCCACAACGGCCAGCAGAGCCTGCTCG
AGGCGGTGCTCCAGCGGTGGTGTGTGCAGCAGTCAGAGTTCTATGGCAAA
TACTGCATTGCGGCGACCATGTGCTCCTTCTGCCGCATGCTGGAGAGCAA
CCACCCTCCGCTATTGCAGGTGGTGGTGCCAGGCGACCGCACAGGCTCCT
CACGCTACTCTCTCCGCAGCAGCAGGAGGCAGCAGCAAGCAGCTCCAGCA
GCACGCGGNNNNNNNNNNTCCTCTGTGGGGCTATCGCTCGTTTCTCCTCC
ATTCTCGCGGCACTCCTCTTGGAGGTCTTGGTGGCAGTGAGCCACCGACT
GCTCACCGTCCGTATGACGGACATGCAGCAATCGCTCACAACGGTGGTGG
CGCGGATCATGCTGATGGAGCCCGTCACTGCTGCCCAGCGCCTAGCCTCG
GTTCCCTCCTGCCACAACGGCCAGCAGAGCCTGCTCGAGGCGGTGCTCCA
GCGGTGGTGTGTGCAGCAGTCAGAGTTCTATGGCAAATACTGCATTGCGG
CGACCATGTGCTCCTTCTGCCGCATGCTGGAGAGCAACCACCCTCCGCTA
TTGCAGGTGGTGGTGCCAGGCGACCGCACAGGCTCCTCACGCTACTCTCT
CCGCAGCAGCAGGAGGCAGCAGCACAAGGTGCCCCTGCAGACGAAGTTGG
TGAAGCTGCTGCTGAACCACCACTGCCAGCTGCAGGAGGCCGGCGCCGTC
GCCGACCCCGACGGCCTCGACGGCGACGACGGCGATTTCTTCGACATCAG
CGACCAAGGTGCCCCTGCAGACGAAGTTGGTGAAGCTGCTGCTGAACCAC
CACTGCCAGCTGCAGGAGGCCGGCGCCGTCGCCGACCCCGACGGCCTCGA
CGGCGACGACGGCGATTTCTTCGACATCAGCGAC
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