mRNA_M-pyrifera_M_contig81446.19054.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81446.19054.1
Unique NamemRNA_M-pyrifera_M_contig81446.19054.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A2D4CGN1_PYTIN (DNA-directed DNA polymerase (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGN1_PYTIN)

HSP 1 Score: 101 bits (252), Expect = 5.510e-23
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RR+DIKV+  R F FALLYFTGSDH NRSMR FAR+ G+SL+D  L  +V  R+G++ +      G ++ C SE D+  ALGME++ P ERN F+
Sbjct:  756 PHRRLDIKVYPRRCFGFALLYFTGSDHFNRSMRLFARKKGWSLSDRALKRVVRVRKGTKVEA-----GEAVVCESEVDVLIALGMEYKDPTERNCFE 847
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A8K1C261_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C261_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 2.610e-22
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RR+DIKV+  R F FALLYFTGSDH NRSMR +AR+ G+SL+D  L  +V  R+  + +      G S+ C SE D++ ALG+E++ P ERN FD
Sbjct: 1037 PHRRLDIKVYPRRCFGFALLYFTGSDHFNRSMRLYARKKGWSLSDRALKRVVRVRKDVKIES-----GESVVCQSEVDVFIALGLEYKDPTERNCFD 1128
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A3R7G9Z4_9STRA (DNA polymerase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G9Z4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.880e-22
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RRIDIKV+  R F FA L+FTGSDH NRSMR+FA + G++L+D  L+ ++ R  G +  Q     G S+ C SE DI+ ALG+E++ P ERN FD
Sbjct:   44 PYRRIDIKVYPRRFFSFATLHFTGSDHFNRSMRFFANKNGWNLSDRALTRVM-RVNGLKVKQ-----GESVICESEVDIFIALGLEYKEPTERNCFD 134
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A7S4CPW7_9EUGL (DNA polymerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CPW7_9EUGL)

HSP 1 Score: 90.9 bits (224), Expect = 2.740e-21
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   13 RRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERN 288
            RRIDIKV+    FPFA+LYFTGSD+ NRSMR +  + G SL+D GL  +V      R  +D   EG  IPC SE+DI+ A+G+E++ P ER+
Sbjct:   57 RRIDIKVYPKHMFPFAVLYFTGSDYFNRSMRLYCHQKGLSLSDKGLVPVV------RVKKDVVHEGPPIPCNSEKDIFDAIGLEYKEPSERS 142
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: F0WG97_9STRA (DNA polymerase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG97_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.420e-20
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RR+DIKV+  R +PFALLYFTGSDH NRSMR +A++ GYSL+D  L  ++ R  G + D  D      + C +E +I+ ALG+E++ P ERN FD
Sbjct:  513 PHRRLDIKVYPRRFYPFALLYFTGSDHFNRSMRLYAKKRGYSLSDRFLKPVM-RASGHQIDIGD-----FVKCTNEAEIFIALGLEYKDPLERNCFD 603
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A5D6XPH7_9STRA (DNA polymerase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPH7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.960e-20
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMI--VHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RR+DIKV+  R F FALLYFTGSDH NRS+R FA + G+SL+D  L  +  V+ +R +R        G S+ C SE D++ ALGM+++ P ERN FD
Sbjct:  532 PHRRLDIKVYPRRCFGFALLYFTGSDHFNRSVRLFANKKGWSLSDRALKPVTCVNDKRVAR--------GASVVCTSEVDVFIALGMDYKDPRERNCFD 622
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A662XNQ9_9STRA (BRCT domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNQ9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.020e-20
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RR+DIKV+  R F FA+LYFTGSDH NRSMR FA + G+SL+D  L  ++ R  G +  Q     G S+ C SE D++ ALG+E++ P ERN FD
Sbjct:  903 PYRRLDIKVYPRRFFGFAMLYFTGSDHFNRSMRLFAHKNGWSLSDRALQRVM-RVSGMKVQQ-----GESVICESEVDVFIALGLEYKDPTERNCFD 993
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: M4B6V3_HYAAE (DNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6V3_HYAAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.730e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 ESPARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            + P RR+D+KV+    F FA+LYFTGSDH NRSMR FA + G+SL+D  L+ +V R  G+         G S+ C SE D++ ALG+E++ P ERN FD
Sbjct:  488 DRPYRRLDVKVYPRHFFGFAILYFTGSDHFNRSMRLFAHKNGWSLSDRALTQVV-RANGTTV-----RLGDSVICESEVDVFIALGLEYKDPIERNCFD 580
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A833W654_PHYIN (DNA-directed DNA polymerase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W654_PHYIN)

HSP 1 Score: 91.3 bits (225), Expect = 2.380e-19
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RR+DIK++    F FA+LYFTGSDH NRSMR FA + G+SL+D  L+ ++ R  G++        G S+ C SE D++ ALG+E++ P ERN FD
Sbjct:  591 PYRRLDIKIYPRHFFGFAMLYFTGSDHFNRSMRLFANKNGWSLSDRALTRVM-RVNGTKV-----RLGDSVICESEVDVFIALGLEYKHPTERNCFD 681
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BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Match: A0A421FWQ7_9STRA (DNA polymerase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FWQ7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.210e-19
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    7 PARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGLSMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD 297
            P RRIDIKV+  R F FA L+FTGSDH NRSMR FA + G++L+D  L+ ++ R  G +  Q     G S+ C SE D++ ALG+E++ P ERN FD
Sbjct:  513 PYRRIDIKVYPRRFFGFATLHFTGSDHFNRSMRLFANKNGWNLSDRALTRVM-RINGLKVKQ-----GESVICESEVDVFIALGLEYKEPTERNCFD 603
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81446.19054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4CGN1_PYTIN5.510e-2352.58DNA-directed DNA polymerase (Fragment) n=2 Tax=Pyt... [more]
A0A8K1C261_PYTOL2.610e-2251.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7G9Z4_9STRA4.880e-2251.55DNA polymerase n=2 Tax=Phytophthora kernoviae TaxI... [more]
A0A7S4CPW7_9EUGL2.740e-2151.09DNA polymerase n=1 Tax=Eutreptiella gymnastica Tax... [more]
F0WG97_9STRA1.420e-2050.52DNA polymerase n=1 Tax=Albugo laibachii Nc14 TaxID... [more]
A0A5D6XPH7_9STRA1.960e-2050.51DNA polymerase n=1 Tax=Pythium brassicum TaxID=148... [more]
A0A662XNQ9_9STRA2.020e-2051.55BRCT domain-containing protein n=2 Tax=Nothophytop... [more]
M4B6V3_HYAAE6.730e-2048.48DNA polymerase n=1 Tax=Hyaloperonospora arabidopsi... [more]
A0A833W654_PHYIN2.380e-1948.45DNA-directed DNA polymerase n=1 Tax=Phytophthora i... [more]
A0A421FWQ7_9STRA3.210e-1950.52DNA polymerase n=2 Tax=Phytophthora kernoviae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81446contigM-pyrifera_M_contig81446:138..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog653948.CCA20232
Preferred namePOLB
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.9813795-CDS-M-pyrifera_M_contig81446:137..4341622816720.9813795-CDS-M-pyrifera_M_contig81446:137..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81446 138..434 +
1692278139.6996424-CDS-M-pyrifera_M_contig81446:137..4341692278139.6996424-CDS-M-pyrifera_M_contig81446:137..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81446 138..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81446.19054.1prot_M-pyrifera_M_contig81446.19054.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81446 138..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81446.19054.1

>prot_M-pyrifera_M_contig81446.19054.1 ID=prot_M-pyrifera_M_contig81446.19054.1|Name=mRNA_M-pyrifera_M_contig81446.19054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ESPARRIDIKVWDARAFPFALLYFTGSDHSNRSMRYFARRLGYSLTDTGL
SMIVHRRRGSRKDQDDKTEGFSIPCASEQDIYHALGMEHRFPFERNGFD
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mRNA from alignment at M-pyrifera_M_contig81446:138..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81446.19054.1 ID=mRNA_M-pyrifera_M_contig81446.19054.1|Name=mRNA_M-pyrifera_M_contig81446.19054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig81446:138..434+ (Macrocystis pyrifera P11B4 male)
GAGTCACCTGCACGTCGAATTGATATCAAGGTATGGGATGCACGTGCTTT
TCCATTCGCTCTCTTGTACTTTACTGGTTCTGATCACTCCAATCGATCAA
TGCGATATTTTGCCAGACGACTTGGATACTCTCTCACTGACACTGGATTG
AGTATGATAGTCCATCGAAGACGTGGCTCAAGGAAAGACCAAGATGACAA
AACTGAAGGATTCTCCATCCCATGTGCATCAGAGCAAGATATCTATCATG
CGTTGGGGATGGAGCATCGATTCCCTTTTGAAAGGAATGGTTTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81446:138..434+

>mRNA_M-pyrifera_M_contig81446.19054.1 ID=mRNA_M-pyrifera_M_contig81446.19054.1|Name=mRNA_M-pyrifera_M_contig81446.19054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig81446:138..434+ (Macrocystis pyrifera P11B4 male)
GAGTCACCTGCACGTCGAATTGATATCAAGGTATGGGATGCACGTGCTTT
TCCATTCGCTCTCTTGTACTTTACTGGTTCTGATCACTCCAATCGATCAA
TGCGATATTTTGCCAGACGACTTGGATACTCTCTCACTGACACTGGATTG
AGTATGATAGTCCATCGAAGACGTGGCTCAAGGAAAGACCAAGATGACAA
AACTGAAGGATTCTCCATCCCATGTGCATCAGAGCAAGATATCTATCATG
CGTTGGGGATGGAGCATCGATTCCCTTTTGAAAGGAATGGTTTTGATGAG
TCACCTGCACGTCGAATTGATATCAAGGTATGGGATGCACGTGCTTTTCC
ATTCGCTCTCTTGTACTTTACTGGTTCTGATCACTCCAATCGATCAATGC
GATATTTTGCCAGACGACTTGGATACTCTCTCACTGACACTGGATTGAGT
ATGATAGTCCATCGAAGACGTGGCTCAAGGAAAGACCAAGATGACAAAAC
TGAAGGATTCTCCATCCCATGTGCATCAGAGCAAGATATCTATCATGCGT
TGGGGATGGAGCATCGATTCCCTTTTGAAAGGAATGGTTTTGAT
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