mRNA_M-pyrifera_M_contig81371.19032.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81371.19032.1
Unique NamemRNA_M-pyrifera_M_contig81371.19032.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A250WVU3_9CHLO (S5A_REDUCTASE domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WVU3_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 3.110e-48
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPT-GFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYE 453
            D+AG+ + +  LL + V D+QK  +R++ +N+  +   G+W+  RHPNFFGEI  WWGIFL+ VP  +S+ + GFAT++ P+LTMAILLFLSGMPTAEG NQ RFL  P +   Y  YRNRT PI+P P FLY+ LPL+ KRIF  E  +YE
Sbjct:  144 DWAGLAVFLVGLLFEVVGDLQKDAFRSNKANRREFMCNGLWSVSRHPNFFGEIAMWWGIFLIGVPVFISSASWGFATVVGPVLTMAILLFLSGMPTAEGDNQKRFLRDPEIRTRYMEYRNRTSPILPLPPFLYAALPLIIKRIFLLELPLYE 295          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A5A8E3I7_CAFRO (S5A_REDUCTASE domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3I7_CAFRO)

HSP 1 Score: 146 bits (368), Expect = 6.600e-40
Identity = 68/151 (45.03%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYE 453
            D+ G+ +    L+ +   D QK  ++  P ++G     G++   RHPN+ GE+  WWG F++  P+  ++P G+ +ILSP+ TM ILLFLSGMP+AEG  Q +++ TP LA EY SYR+RT PI+P P   Y  LP + K++FCCEF MYE
Sbjct:  141 DWVGVAVYGLGLIFEVGGDAQKLVFKQSPDSRGRHPSGGLYCCMRHPNYTGEMLLWWGTFIMAAPTFGADPVGWVSILSPVFTMLILLFLSGMPSAEGAAQTKYMKTPALADEYASYRDRTSPIVPVPPACYGALPRVVKQVFCCEFPMYE 291          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: UPI000A2A8159 (uncharacterized protein LOC110235524 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8159)

HSP 1 Score: 141 bits (356), Expect = 2.490e-38
Identity = 73/161 (45.34%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYEYQEEEHNISS 483
            DY G+ I    L+++AV+D  K  +R +P+NKG WC+VG W W RHPN+FGE+  WWGIF  ++  ++ +   +A++LSPL  MAILLFLSG+P  E +   R+ S P     Y  Y+NRT P+I  P  LY+ L  + K IFCCEF  Y   ++E   SS
Sbjct:  140 DYVGVGIFAFGLILEAVSDQLKFSFRNNPANKGKWCEVGPWKWSRHPNYFGEMLVWWGIF--IISCSILSGGEWASVLSPLFLMAILLFLSGIPLLEAKADERYGSLPV----YREYKNRTSPLILLPPPLYAALNNVIKAIFCCEFPFYNKMKDEPGESS 294          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A7M5V012_9CNID (S5A_REDUCTASE domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V012_9CNID)

HSP 1 Score: 140 bits (354), Expect = 4.310e-38
Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMY 450
            DY G+ +    L+I+ +AD QK  YR +P NKGHWCD G+W+W RHPN++GEI  WWG F +    A+ +   + +++SPL  M+ILLFLSG+P  E +   ++ S      EY  Y+ RT P++  P +LY  +  + K +FCCEF MY
Sbjct:  142 DYVGIALFAVGLIIETIADQQKFNYRNNPDNKGHWCDTGLWSWSRHPNYYGEILVWWGAFAVSAEIAVYDSKLWTSVISPLFLMSILLFLSGIPLLETKADEKYGSK----EEYIIYKKRTSPLLLLPPYLYQRMGKIIKVMFCCEFPMY 287          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A7RQ30_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQ30_NEMVE)

HSP 1 Score: 140 bits (354), Expect = 5.560e-38
Identity = 72/161 (44.72%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYEYQEEEHNISS 483
            DY G+ I    LL++AVAD  K  +R +P+NKG WC VG W+W RHPN+FGE+  WWGIF++     +     +A +L P+  MAILLFLSG+P  E +   R+ +  T    Y  YR RT P+IP P  LY+ L  + K IFCCEF +Y + ++E   +S
Sbjct:  143 DYVGVAIFAIGLLLEAVADQLKFNFRNNPANKGKWCTVGPWSWSRHPNYFGEMCCWWGIFIISCSILIGGE--WAAVLGPIFLMAILLFLSGIPLLEKKADERYGNLDT----YREYRIRTSPLIPLPPPLYAALNNILKAIFCCEFPLYNHLKDEPGENS 297          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A0G4GCP7_VITBC (S5A_REDUCTASE domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GCP7_VITBC)

HSP 1 Score: 141 bits (355), Expect = 6.180e-38
Identity = 69/155 (44.52%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPT---GFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYEY 456
            D+ G+V+     + Q V+DVQK  +RA+P+N+G  C  G+W + RHPN+FGE+  WW IFL+    A+   T   G+AT++SP+ TM +LLFLSG+P AEG N  R+   PT      +Y+    P+IP P  +Y NLP++ K++F  EF MYEY
Sbjct:  142 DFIGIVLFALGFICQVVSDVQKYIFRANPANRGIPCTTGLWAYSRHPNYFGEMVIWWAIFLMSA-RAIHESTDTWGWATVVSPIWTMILLLFLSGIPYAEGANLKRYFENPTSRPMIEAYQRDVSPVIPMPQVVYRNLPMIVKQVFLFEFPMYEY 295          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A7S3Z907_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z907_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 1.090e-37
Identity = 74/162 (45.68%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFA--TILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIP-FPSFLYSNLPLLAKRIFCCEFRMYEYQEEEHNI 477
            DY G ++     L +  ADVQK  +R DPSN+G  C+VGVW   RHPN+FGE+  WWG F + V         +A   +LSPL TM +LLF+SG+P AEGQN  RF+ T      +  Y N  PP++P FPS +Y  LP  +K +FCCEF MY + E+E  +
Sbjct:  176 DYIGFILVGVGTLFEVAADVQKFFFRKDPSNRGKVCNVGVWAISRHPNYFGEVLIWWGAFTVAVLPIQDREDYWALWVVLSPLFTMFLLLFVSGIPMAEGQNLKRFMKTEESKERFMEYFNSVPPLVPCFPS-IYGILPGWSKCLFCCEFPMYAFDEQEQAL 336          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A6J8CKR7_MYTCO (S5A_REDUCTASE domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8CKR7_MYTCO)

HSP 1 Score: 139 bits (350), Expect = 1.440e-37
Identity = 67/157 (42.68%), Postives = 96/157 (61.15%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYEYQEEEH 471
            D  G +  +  LL +A AD+QK  +R +P NKG WCD G+W + RHPN+FGEI  WWG+F  ++ +++     +A ILSPL TM ILLFLSG+P  E ++  R+         Y  Y+NRT P++P P   Y + P   K + CCEF +Y++  EE+
Sbjct:  125 DIVGGIFFIVGLLCEAFADIQKFNFRNNPINKGKWCDTGLWKYSRHPNYFGEIVIWWGVF--IISTSVLTYGQWAAILSPLFTMTILLFLSGIPLLEKKSDERYRKNDL----YIEYKNRTSPLVPSPQSCYGSCPNFLKCLCCCEFPLYDHMNEEN 275          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A7S2TVB2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVB2_9EUKA)

HSP 1 Score: 140 bits (353), Expect = 1.580e-37
Identity = 75/163 (46.01%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFA--TILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIP-FPSFLYSNLPLLAKRIFCCEFRMYEYQEEEHNIS 480
            DY G +      L +  ADVQK  +R DPSN+G  C+VGVW+  RHPN+FGE+  WWG F + V          A   +LSPL TM +LLF+SG+P AEGQN  RF+ T      +  Y N  PP++P FPS +Y  LP   K +FCCEF MY Y E+E  ++
Sbjct:  162 DYIGFIFVGVGTLFEVAADVQKFFFRKDPSNRGKVCNVGVWSISRHPNYFGEVLIWWGAFTVAVRPIQDREDYGALWVVLSPLFTMFLLLFVSGIPLAEGQNLKRFMRTTENKERFMEYFNSVPPLVPCFPS-IYGLLPDWTKCLFCCEFPMYAYNEQEQALN 323          
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Match: A0A8B6XQL4_HYDVU (uncharacterized protein C594.04c-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XQL4_HYDVU)

HSP 1 Score: 139 bits (350), Expect = 1.620e-37
Identity = 71/156 (45.51%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    1 DYAGMVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIGFWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARFLSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYEYQEEE 468
            DY G  I +  LLI+AV+D QK  +R +PSNKG WC+ G+W+W RHPN+FGEI  WWG F++ +     N   + +I+SPL+TM +LLF+SG+P  E     +F     L A+Y SY+ +T P+I  P FLYS +  + K IFC EF  Y   + E
Sbjct:  142 DYVGFSIFLLGLLIEAVSDQQKFSFRNNPSNKGLWCNAGLWSWSRHPNYFGEILVWWGSFIISIAVIRENKQLWTSIMSPLVTMLLLLFVSGIPLLEKTADEKF----HLNADYVSYKLQTSPLILCPPFLYSRMNRILKLIFCFEFPFYSKLDSE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81371.19032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A250WVU3_9CHLO3.110e-4853.95S5A_REDUCTASE domain-containing protein n=1 Tax=Ch... [more]
A0A5A8E3I7_CAFRO6.600e-4045.03S5A_REDUCTASE domain-containing protein n=3 Tax=Ca... [more]
UPI000A2A81592.490e-3845.34uncharacterized protein LOC110235524 n=1 Tax=Exaip... [more]
A0A7M5V012_9CNID4.310e-3843.33S5A_REDUCTASE domain-containing protein n=1 Tax=Cl... [more]
A7RQ30_NEMVE5.560e-3844.72Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A0G4GCP7_VITBC6.180e-3844.52S5A_REDUCTASE domain-containing protein n=2 Tax=Vi... [more]
A0A7S3Z907_9EUKA1.090e-3745.68Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A6J8CKR7_MYTCO1.440e-3742.68S5A_REDUCTASE domain-containing protein n=2 Tax=My... [more]
A0A7S2TVB2_9EUKA1.580e-3746.01Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8B6XQL4_HYDVU1.620e-3745.51uncharacterized protein C594.04c-like n=1 Tax=Hydr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81371contigM-pyrifera_M_contig81371:448..930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog227086.JGI_V11_34348
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.0138354-CDS-M-pyrifera_M_contig81371:447..9181622816720.0138354-CDS-M-pyrifera_M_contig81371:447..918Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81371 448..918 -
1692278139.219418-CDS-M-pyrifera_M_contig81371:447..9181692278139.219418-CDS-M-pyrifera_M_contig81371:447..918Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81371 448..918 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.0284595-UTR-M-pyrifera_M_contig81371:918..9301622816720.0284595-UTR-M-pyrifera_M_contig81371:918..930Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81371 919..930 -
1692278139.2308447-UTR-M-pyrifera_M_contig81371:918..9301692278139.2308447-UTR-M-pyrifera_M_contig81371:918..930Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81371 919..930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81371.19032.1prot_M-pyrifera_M_contig81371.19032.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81371 448..918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81371.19032.1

>prot_M-pyrifera_M_contig81371.19032.1 ID=prot_M-pyrifera_M_contig81371.19032.1|Name=mRNA_M-pyrifera_M_contig81371.19032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MVIGVACLLIQAVADVQKARYRADPSNKGHWCDVGVWTWCRHPNFFGEIG
FWWGIFLLVVPSALSNPTGFATILSPLLTMAILLFLSGMPTAEGQNQARF
LSTPTLAAEYNSYRNRTPPIIPFPSFLYSNLPLLAKRIFCCEFRMYEYQE
EEHNISS
back to top

mRNA from alignment at M-pyrifera_M_contig81371:448..930-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81371.19032.1 ID=mRNA_M-pyrifera_M_contig81371.19032.1|Name=mRNA_M-pyrifera_M_contig81371.19032.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig81371:448..930- (Macrocystis pyrifera P11B4 male)
GACTATGCGGGGATGGTGATTGGCGTGGCGTGTCTGTTGATTCAGGCCGT GGCTGATGTGCAAAAGGCACGATATCGCGCTGATCCCTCCAACAAGGGTC ACTGGTGCGATGTTGGCGTGTGGACGTGGTGTCGCCACCCCAACTTTTTC GGAGAAATCGGGTTTTGGTGGGGCATCTTCCTCCTCGTGGTTCCCTCAGC TCTCTCCAACCCAACTGGCTTCGCCACCATCCTCTCCCCGCTCCTCACCA TGGCGATCCTCCTCTTCCTCTCAGGCATGCCCACTGCAGAAGGACAGAAC CAAGCCAGGTTCCTCTCCACACCCACTCTTGCGGCAGAGTACAACTCGTA CCGAAACCGCACGCCCCCCATCATCCCCTTCCCCTCCTTCCTCTACTCCA ACCTCCCGCTCCTCGCCAAGAGAATCTTCTGCTGCGAATTCCGAATGTAC GAGTACCAGGAAGAAGAACACAACATCTCCAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81371:448..930-

>mRNA_M-pyrifera_M_contig81371.19032.1 ID=mRNA_M-pyrifera_M_contig81371.19032.1|Name=mRNA_M-pyrifera_M_contig81371.19032.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig81371:448..930- (Macrocystis pyrifera P11B4 male)
ATGGTGATTGGCGTGGCGTGTCTGTTGATTCAGGCCGTGGCTGATGTGCA
AAAGGCACGATATCGCGCTGATCCCTCCAACAAGGGTCACTGGTGCGATG
TTGGCGTGTGGACGTGGTGTCGCCACCCCAACTTTTTCGGAGAAATCGGG
TTTTGGTGGGGCATCTTCCTCCTCGTGGTTCCCTCAGCTCTCTCCAACCC
AACTGGCTTCGCCACCATCCTCTCCCCGCTCCTCACCATGGCGATCCTCC
TCTTCCTCTCAGGCATGCCCACTGCAGAAGGACAGAACCAAGCCAGGTTC
CTCTCCACACCCACTCTTGCGGCAGAGTACAACTCGTACCGAAACCGCAC
GCCCCCCATCATCCCCTTCCCCTCCTTCCTCTACTCCAACCTCCCGCTCC
TCGCCAAGAGAATCTTCTGCTGCGAATTCCGAATGTACGAGTACCAGGAA
GAAGAACACAACATCTCCAGCATGGTGATTGGCGTGGCGTGTCTGTTGAT
TCAGGCCGTGGCTGATGTGCAAAAGGCACGATATCGCGCTGATCCCTCCA
ACAAGGGTCACTGGTGCGATGTTGGCGTGTGGACGTGGTGTCGCCACCCC
AACTTTTTCGGAGAAATCGGGTTTTGGTGGGGCATCTTCCTCCTCGTGGT
TCCCTCAGCTCTCTCCAACCCAACTGGCTTCGCCACCATCCTCTCCCCGC
TCCTCACCATGGCGATCCTCCTCTTCCTCTCAGGCATGCCCACTGCAGAA
GGACAGAACCAAGCCAGGTTCCTCTCCACACCCACTCTTGCGGCAGAGTA
CAACTCGTACCGAAACCGCACGCCCCCCATCATCCCCTTCCCCTCCTTCC
TCTACTCCAACCTCCCGCTCCTCGCCAAGAGAATCTTCTGCTGCGAATTC
CGAATGTACGAGTACCAGGAAGAAGAACACAACATCTCCAGC
back to top