prot_M-pyrifera_M_contig81261.19004.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig81261.19004.1
Unique Nameprot_M-pyrifera_M_contig81261.19004.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length124
Homology
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A5A8CRW7_CAFRO (Leucine--tRNA ligase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRW7_CAFRO)

HSP 1 Score: 86.3 bits (212), Expect = 3.590e-17
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 124
            YRD C ++G  +H  L   F +   + IAPICPHWAEEV+E IG PGG  ++  A WP   + +AA+   G WL  + H+ R +  +  + A K   KG A +   +   IY    +  WQ  V
Sbjct:  932 YRDACEKLGEEMHGELAAWFMHAQAIAIAPICPHWAEEVWETIGCPGGAKSIHEARWPDGVAADAAVLSRGTWLLGLAHSIRASVDAEVKKAAK---KGDADAS-FNACTIYTRKAYQDWQVAV 1051          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A024GMT2_9STRA (Leucine--tRNA ligase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMT2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.690e-11
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDA-AKSARRVAEKKKGKGTAPSGPIDTIR----IYAVSDFTTWQK 122
            YRD+C R  + +H  ++ R+ N   + ++PICPH+ E ++ ++G  G    V+   WP   S + +L  AG +L + +   RD  AKS+     K   KG   S  + T R    IY  ++F  WQ+
Sbjct:  847 YRDLCTRGEIAMHSKVLDRYVNAQTIMLSPICPHFCEHIWSIMGNSG---FVSTTSWPIVDSVDHSLLRAGDFLGKTIRHFRDIQAKSSGNNRSKSSTKG---SEAVPTKRSHAHIYLATEFPLWQQ 967          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: E4X998_OIKDI (Leucine--tRNA ligase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4X998_OIKDI)

HSP 1 Score: 60.8 bits (146), Expect = 2.820e-8
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQK 122
            YR+IC   G+  +  L+ RF  V  + I PICPH AEEV+E+ G+ G      + P+P     +  L ++  +L + +   RD     +   + KKGK  AP+       +Y   ++  WQ+
Sbjct:  787 YREICGSEGM--NAKLVDRFIEVQTLLICPICPHIAEEVWEITGKKG---FAVSTPFPEILEYDPVLIESSEFLAETV---RDVRLKLKDRLQPKKGK--APAEIPTNCTVYVAKEYPAWQR 898          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A8J9UK77_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9UK77_9NEOP)

HSP 1 Score: 60.8 bits (146), Expect = 2.830e-8
Identity = 33/124 (26.61%), Postives = 56/124 (45.16%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 124
            YR++C   G+  H  L  R+  V    +AP+CPH AE V++++G      ++    WP     +     A  +L +  H+ R   K+   V + KKG+   P    +   I+   +F  WQ  +
Sbjct:  830 YRELCGEAGV--HAALAARYGAVQAALLAPVCPHVAEHVWQLLGNKE---SILHERWPVAGEVDEVAVKASNYLMEAAHSFRIYLKNHCAVKKPKKGETVKPEPKPNKAIIWVAKEFPKWQHII 948          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A7S4BH41_CHRCT (Leucine--tRNA ligase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH41_CHRCT)

HSP 1 Score: 60.1 bits (144), Expect = 5.280e-8
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 0
Query:   16 LMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPI-DTIRIYAVSDFTTWQKTV 124
            L++++     + +API PHW EE++E++G  G    V  A WP+   E+  ++ AG++L  + HA   A      V + KK KG  P GP  + + +Y  S F  W+  V
Sbjct:  959 LVQQWGEWQALMMAPITPHWCEEIWEIVGGKG---CVVRARWPTPRQEDPKISAAGQYLFGLTHALSTAV-----VNKDKKSKG--PQGPKPNQVNLYLASSFPRWKVLV 1058          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A7S0QC49_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QC49_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 7.160e-8
Identity = 39/125 (31.20%), Postives = 62/125 (49.60%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSS-EEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 124
            YR    ++GL     L++++A    + +API PHW EE++  +G+ G    V  A WPS S  E+  +  AG +L  + H    A  +     +KKK KG A     + + +Y  S F  W++ V
Sbjct:  977 YRTGTAQVGL--LESLLRQWAEWQAIVMAPITPHWCEELWCKLGKQG---CVVKARWPSPSQPEQPEITAAGHYLFGLAHTLSTALVN----RDKKKAKGPAEEHKPNQVNLYVASSFPRWKELV 1092          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: UPI00103FEDA6 (leucine--tRNA ligase, cytoplasmic n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEDA6)

HSP 1 Score: 59.7 bits (143), Expect = 7.170e-8
Identity = 34/124 (27.42%), Postives = 57/124 (45.97%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 124
            YR++C  +GL  H  L+ R+       +APICPH AE V+E++G      ++    WP +   +     A  +L    H+ R   K+   V + KKG+   P    +   I+   ++  WQ  +
Sbjct:  832 YRELCADVGL--HANLLTRYIETQAKLMAPICPHVAEHVWELLGNKR---SILHERWPVSGDIDEVAVKASNYLMDAAHSFRIYLKNHCAVKKPKKGEAPKPEKKPNKAIIWVAKEYPRWQHII 950          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: D7FTL8_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 9.740e-8
Identity = 36/122 (29.51%), Postives = 61/122 (50.00%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQK 122
            YRD C +    +H  L+ RF  V  + +AP+CPH+AE  + ++G  G   +V  A WP T   +  ++ + ++L + L       K+ R  A+K KG   AP     +  +Y  S +  W++
Sbjct:  886 YRDWCLKTSTLMHKTLILRFMEVQILLLAPMCPHYAEHFWGLLGH-GESGSVLKASWPQTGEVDGWMSRSFQFLSKTL-------KAFRLTAQKSKG---APK----SAHVYVASAYPQWKQ 992          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A0D2WYV3_CAPO3 (Leucine--tRNA ligase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WYV3_CAPO3)

HSP 1 Score: 58.9 bits (141), Expect = 1.300e-7
Identity = 36/123 (29.27%), Postives = 58/123 (47.15%), Query Frame = 0
Query:    2 RDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGTAPSGPIDTIRIYAVSDFTTWQKTV 124
            RD    +    +  +++RF  V+ + IAPICPH+AE V+ ++GR         APWP   + +       R++    H+ R  A++   VA+  KGKG A         I+    +  WQ+ V
Sbjct:  616 RDFYREVSSAPNRRVLERFLEVSSILIAPICPHYAEHVFSLLGRKT---LAINAPWPVAGAVDELTLKMARYISTTAHSFR--ARAQLVVAKGNKGKGPAVELKNLNGTIFYAKSYPAWQEHV 733          
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Match: A0A7S1D882_CYCTE (Leucine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D882_CYCTE)

HSP 1 Score: 56.6 bits (135), Expect = 8.130e-7
Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 0
Query:    1 YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYPTVTAAPWPSTSSEEAALADAGRWLEQVL 78
            YR  C    +P+H  +++++A    V I PICPHW+E++++V+G+ G       A WP++  E+  L     +L   L
Sbjct:  411 YRSWCQDGAVPMHHDVIRKWAESLVVMICPICPHWSEKLWKVLGKEG---FAVKASWPTSDHEDKVLTRQAAFLRSSL 485          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81261.19004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CRW7_CAFRO3.590e-1737.10Leucine--tRNA ligase n=3 Tax=Cafeteria roenbergens... [more]
A0A024GMT2_9STRA5.690e-1131.50Leucine--tRNA ligase n=1 Tax=Albugo candida TaxID=... [more]
E4X998_OIKDI2.820e-830.33Leucine--tRNA ligase n=1 Tax=Oikopleura dioica Tax... [more]
A0A8J9UK77_9NEOP2.830e-826.61(lesser marbled fritillary) hypothetical protein n... [more]
A0A7S4BH41_CHRCT5.280e-832.73Leucine--tRNA ligase n=1 Tax=Chrysotila carterae T... [more]
A0A7S0QC49_9EUKA7.160e-831.20Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithu... [more]
UPI00103FEDA67.170e-827.42leucine--tRNA ligase, cytoplasmic n=1 Tax=Ostrinia... [more]
D7FTL8_ECTSI9.740e-829.51Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A0D2WYV3_CAPO31.300e-729.27Leucine--tRNA ligase n=2 Tax=Capsaspora owczarzaki... [more]
A0A7S1D882_CYCTE8.130e-732.05Leucine--tRNA ligase n=1 Tax=Cyclophora tenuis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013155Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-bindingPFAMPF08264Anticodon_1coord: 21..91
e-value: 5.0E-7
score: 29.8
NoneNo IPR availableGENE3D1.10.730.20coord: 15..107
e-value: 1.5E-5
score: 26.5
NoneNo IPR availablePANTHERPTHR45794:SF1LEUCINE--TRNA LIGASE, CYTOPLASMICcoord: 1..124
IPR004493Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolicPANTHERPTHR45794Leucyl-tRNA synthetasecoord: 1..124
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingSUPERFAMILY47323Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasescoord: 19..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81261contigM-pyrifera_M_contig81261:1..372 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81261.19004.1mRNA_M-pyrifera_M_contig81261.19004.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig81261 1..372 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig81261.19004.1 ID=prot_M-pyrifera_M_contig81261.19004.1|Name=mRNA_M-pyrifera_M_contig81261.19004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
YRDICNRIGLPLHPVLMKRFANVACVTIAPICPHWAEEVYEVIGRPGGYP
TVTAAPWPSTSSEEAALADAGRWLEQVLHACRDAAKSARRVAEKKKGKGT
APSGPIDTIRIYAVSDFTTWQKTV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013155M/V/L/I-tRNA-synth_anticd-bd
IPR004493Leu-tRNA-synth_Ia_arc/euk
IPR009080tRNAsynth_Ia_anticodon-bd