mRNA_M-pyrifera_M_contig100084.19.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100084.19.1
Unique NamemRNA_M-pyrifera_M_contig100084.19.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: I7MF85_TETTS (Fimbrin-like protein n=2 Tax=Tetrahymena thermophila TaxID=5911 RepID=I7MF85_TETTS)

HSP 1 Score: 72.4 bits (176), Expect = 9.800e-12
Identity = 47/169 (27.81%), Postives = 83/169 (49.11%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVA-VESLPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRAKSPTPEEK 504
            L W+ +K + L  +    HP L  L  +      E++ +  LP  +LL+ WFN+HLE A HS + +  F  D+S G  Y VL+++++P   N +             + L   +R    +   + +G+        I+NG++++N + C+ L + C GL   +PT +EK
Sbjct:  134 LVWQIIKAQMLFKIDLKNHPYLIRLKKEE----EEISDLLKLPKEELLIRWFNYHLENAKHSTK-INNFSKDVSSGTEYTVLLNQIAPEKCNKD------------GLNLEHLERCKKVINDSKLLGVPPCIKPSDIVNGNQKLNLIFCAHLFNNCPGL---TPTEQEK 282          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: A0DPM9_PARTE (Uncharacterized protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DPM9_PARTE)

HSP 1 Score: 67.0 bits (162), Expect = 7.250e-10
Identity = 47/170 (27.65%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVESLPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKER-ALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRAKSPTPEEKE 507
            L W+ +K++    V+   +P L  L  +    G    +  LPP QLLL WFNHHL+  A ++R++  F  DL DG  Y+VL+++L             +K+R +L  +      R    ++    +G+        I+ G+ ++N + C+++ + C GL   +P+ E+ E
Sbjct:  132 LVWQIIKIQTTKMVNLKENPFLIRLKKEEEEIGD---ILKLPPDQLLLRWFNHHLK-EAKAQRQVNNFDKDLQDGENYIVLLNQL-------------DKDRCSLDGLGQDPENRAKTIIQNAESIGVPKFMRPVHIVKGNSKLNLLFCAQIFNACPGL---TPSQEDYE 281          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: A0A2P7YFL9_9ASCO (Fimbrin n=2 Tax=Metschnikowiaceae incertae sedis TaxID=2937349 RepID=A0A2P7YFL9_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-9
Identity = 51/176 (28.98%), Postives = 86/176 (48.86%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVES---LPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSS-RQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRA--KSPTPEEKEI 510
            L W+ ++   L+ V    HPEL  L  +      + ++E    LPP Q+LL WFN+HL+ A  S+RR+  F  D+SDG  Y VL+++L P   +            LS + ++   +R    LE    +G+    +  +++NG+ ++N    + L +   GL    +S  PE +E 
Sbjct:  248 LIWQIIRRGLLSKVDIKYHPELYRLLEE------DESLEQFLRLPPEQILLRWFNYHLKNAG-SQRRVNNFSKDISDGENYTVLLNQLQPDSCD------------LSPLKVNDLHERAERILESAERIGVRKYLTPSALVNGNPKLNLAFVAHLFNTYPGLDPIEESEAPEIEEF 404          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: A0A8F2LG47_9ASCO (Ribosome assembly factor mrt4 n=1 Tax=[Candida] haemuloni TaxID=45357 RepID=A0A8F2LG47_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 1.480e-9
Identity = 51/176 (28.98%), Postives = 86/176 (48.86%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVES---LPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSS-RQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRA--KSPTPEEKEI 510
            L W+ ++   L+ V    HPEL  L  +      + ++E    LPP Q+LL WFN+HL+ A  S+RR+  F  D+SDG  Y VL+++L P   +            LS + ++   +R    LE    +G+    +  +++NG+ ++N    + L +   GL    +S  PE +E 
Sbjct:  248 LIWQIIRRGLLSKVDIKYHPELYRLLEE------DESLEQFLRLPPEQILLRWFNYHLKNAG-SQRRVNNFSKDISDGENYTVLLNQLQPDSCD------------LSPLKVNDLHERAERILESAERIGVRKYLTPSALVNGNPKLNLAFVAHLFNTYPGLDPIEESEAPEIEEF 404          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: A0A0W4ZNV1_PNEJ7 (Uncharacterized protein n=1 Tax=Pneumocystis jirovecii (strain RU7) TaxID=1408657 RepID=A0A0W4ZNV1_PNEJ7)

HSP 1 Score: 59.3 bits (142), Expect = 3.460e-7
Identity = 47/167 (28.14%), Postives = 78/167 (46.71%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVESLPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRAKSPTPEE 501
            L W+ ++   L+ +    HPEL  L  +       +    LPP Q+LL WFN HLE AA   RR+  F AD+SDG  Y +L+++L+P   + E          L  + L   +R    L +  ++      +  ++++G+ ++N    + L +   GL    P  EE
Sbjct:  240 LIWQIIRKGLLSKIDIKLHPELYRLLEEDETLDQFLR---LPPEQILLRWFNFHLE-AAKWHRRVSNFSADVSDGENYTILLNQLNPGECSRE---------PLQIIDLL--ERAEKILSLAEKIDCRKYLTPSALVSGNPKLNLAFVAHLFNTYPGLE---PLQEE 388          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: L0PCI5_PNEJ8 (Uncharacterized protein (Fragment) n=1 Tax=Pneumocystis jirovecii (strain SE8) TaxID=1209962 RepID=L0PCI5_PNEJ8)

HSP 1 Score: 59.3 bits (142), Expect = 3.720e-7
Identity = 47/167 (28.14%), Postives = 78/167 (46.71%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVESLPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRAKSPTPEE 501
            L W+ ++   L+ +    HPEL  L  +       +    LPP Q+LL WFN HLE AA   RR+  F AD+SDG  Y +L+++L+P   + E          L  + L   +R    L +  ++      +  ++++G+ ++N    + L +   GL    P  EE
Sbjct:   94 LIWQIIRKGLLSKIDIKLHPELYRLLEEDETLDQFLR---LPPEQILLRWFNFHLE-AAKWHRRVSNFSADVSDGENYTILLNQLNPGECSRE---------PLQIIDLL--ERAEKILSLAEKIDCRKYLTPSALVSGNPKLNLAFVAHLFNTYPGLE---PLQEE 242          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: M7PH02_PNEMU (Uncharacterized protein n=2 Tax=Pneumocystis TaxID=4753 RepID=M7PH02_PNEMU)

HSP 1 Score: 58.5 bits (140), Expect = 6.360e-7
Identity = 41/161 (25.47%), Postives = 76/161 (47.20%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVES---LPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGL 474
            L W+ ++   L+ +    HPEL  L  +      +  +E    LPP Q+LL WFN HL  A   +RR+  F +D+SDG  Y++L+++L P+    +           S   +   +R    L+   ++G     +  ++++G+ ++N    + L +   GL
Sbjct:  226 LIWQIIRKGLLSKIDIKLHPELYRLLEE------DETLEQFLRLPPEQILLRWFNFHLNTAKW-DRRVTNFSSDVSDGENYIILLNQLKPNECTRD-----------SLKTMDLLKRAEEILQSAEKIGCRKYLTPAALVSGNPKLNLAFVAHLFNTYPGL 368          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: A0A899G0X8_9ASCO (Uncharacterized protein n=1 Tax=Pneumocystis wakefieldiae TaxID=38082 RepID=A0A899G0X8_9ASCO)

HSP 1 Score: 58.5 bits (140), Expect = 6.910e-7
Identity = 45/170 (26.47%), Postives = 77/170 (45.29%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVES---LPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRAKSPTPEE 501
            L W+ ++   L+ +    HPEL  L  +      +  +E    LPP Q+LL WFN HL  AA   RR+  F +D+SDG  Y++L+++L P     +           S   +   +R    L+   ++      +  S+++G+ ++N    + L +   GL    P  EE
Sbjct:  204 LIWQIIRKGLLSKIDIKFHPELYRLLEE------DETLEQFLRLPPEQILLRWFNFHLN-AAKWHRRVTNFSSDVSDGENYIILLNQLKPDECTRD-----------SLKTMDLLKRAEEILQSAEKINCRKYLTPSSLVSGNSKLNLAFVAHLFNTYPGLE---PLEEE 352          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: Q6BNR0_DEBHA (DEHA2E19646p n=2 Tax=Debaryomyces TaxID=4958 RepID=Q6BNR0_DEBHA)

HSP 1 Score: 58.2 bits (139), Expect = 8.710e-7
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVES---LPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSP 261
            L W+ V+   L+ V    HPEL  L         +  +E    LPP Q+LL WFN+HL+ A  S+RR+  F  D+SDG  Y VL+++L P
Sbjct:  248 LIWQIVRRGLLSKVDIKLHPELYRLLED------DETLEQFLRLPPEQILLRWFNYHLKNAG-SQRRVNNFSKDISDGENYTVLLNQLQP 330          
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Match: A0A5C6G736_9HYPO (Uncharacterized protein n=2 Tax=Metarhizium rileyi TaxID=1649241 RepID=A0A5C6G736_9HYPO)

HSP 1 Score: 58.2 bits (139), Expect = 8.780e-7
Identity = 48/173 (27.75%), Postives = 81/173 (46.82%), Query Frame = 1
Query:    1 LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVESLPPLQLLLFWFNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEKERALSFVALSSRQRVSHALEIMRE---MGINGNFSVDSILNGSERVNTVLCSRLMDLCSGLRAKSPTPEEKEI 510
            L W+ ++   L+ +    HPEL  L  +   G        LPP Q+LL WFN+HLE AA+   R+  F  D+ DG  Y VL+S++              +E   +   L++R  +  A E+++E   +G     +  S++ G+ R+N    + L +    L    P  EE+++
Sbjct:  251 LIWQIIRRGLLSKIDIKLHPELYRLLRK---GETLEQFLRLPPDQILLRWFNYHLE-AANWPGRVNNFDKDVKDGQNYAVLLSQIG-------------REYGCTRAPLNTRDLLQRAEEVLQESDKLGCRKFLTPKSLVGGNPRLNLAFVANLFNNHPAL---DPITEEEKV 403          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100084.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
I7MF85_TETTS9.800e-1227.81Fimbrin-like protein n=2 Tax=Tetrahymena thermophi... [more]
A0DPM9_PARTE7.250e-1027.65Uncharacterized protein n=2 Tax=Paramecium tetraur... [more]
A0A2P7YFL9_9ASCO1.400e-928.98Fimbrin n=2 Tax=Metschnikowiaceae incertae sedis T... [more]
A0A8F2LG47_9ASCO1.480e-928.98Ribosome assembly factor mrt4 n=1 Tax=[Candida] ha... [more]
A0A0W4ZNV1_PNEJ73.460e-728.14Uncharacterized protein n=1 Tax=Pneumocystis jirov... [more]
L0PCI5_PNEJ83.720e-728.14Uncharacterized protein (Fragment) n=1 Tax=Pneumoc... [more]
M7PH02_PNEMU6.360e-725.47Uncharacterized protein n=2 Tax=Pneumocystis TaxID... [more]
A0A899G0X8_9ASCO6.910e-726.47Uncharacterized protein n=1 Tax=Pneumocystis wakef... [more]
Q6BNR0_DEBHA8.710e-740.00DEHA2E19646p n=2 Tax=Debaryomyces TaxID=4958 RepID... [more]
A0A5C6G736_9HYPO8.780e-727.75Uncharacterized protein n=2 Tax=Metarhizium rileyi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100084contigM-pyrifera_M_contig100084:67..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score76.3
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog72019.SARC_10088T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin filament network formation
EggNOG OGs38BRY@33154,COG5069@1,KOG0046@2759
COG Functional cat.Z
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.409223-CDS-M-pyrifera_M_contig100084:66..5761622815495.409223-CDS-M-pyrifera_M_contig100084:66..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100084 67..576 +
1692277437.7107682-CDS-M-pyrifera_M_contig100084:66..5761692277437.7107682-CDS-M-pyrifera_M_contig100084:66..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100084 67..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100084.19.1prot_M-pyrifera_M_contig100084.19.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100084 67..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100084.19.1

>prot_M-pyrifera_M_contig100084.19.1 ID=prot_M-pyrifera_M_contig100084.19.1|Name=mRNA_M-pyrifera_M_contig100084.19.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
LAWEGVKVKALNTVSTVRHPELSVLSSQPYMGGAEVAVESLPPLQLLLFW
FNHHLEMAAHSERRLEGFGADLSDGVLYLVLVSELSPHLKNTEEEQRSEK
ERALSFVALSSRQRVSHALEIMREMGINGNFSVDSILNGSERVNTVLCSR
LMDLCSGLRAKSPTPEEKEI
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mRNA from alignment at M-pyrifera_M_contig100084:67..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100084.19.1 ID=mRNA_M-pyrifera_M_contig100084.19.1|Name=mRNA_M-pyrifera_M_contig100084.19.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig100084:67..576+ (Macrocystis pyrifera P11B4 male)
CTTGCATGGGAGGGTGTTAAGGTGAAGGCGCTCAACACTGTGTCCACCGT TCGCCATCCTGAACTGTCGGTGCTGAGCTCCCAACCATATATGGGCGGCG CTGAGGTGGCAGTGGAGTCGCTTCCTCCTCTCCAGCTCCTCCTCTTTTGG TTCAACCATCACCTCGAGATGGCGGCACACAGCGAGAGGCGCCTGGAAGG TTTCGGCGCCGACCTCTCTGACGGTGTTCTTTATTTGGTGCTTGTGAGCG AACTCTCTCCCCATTTGAAGAACACTGAGGAAGAGCAGAGGAGTGAGAAG GAGAGAGCGCTCTCTTTCGTGGCCCTCTCTTCTCGTCAGAGAGTCTCTCA TGCACTGGAGATCATGAGAGAGATGGGTATCAACGGCAATTTCTCTGTTG ACTCGATTCTCAATGGAAGCGAGAGAGTTAACACTGTGCTCTGCTCGAGG CTCATGGACCTCTGCTCGGGTCTCAGGGCAAAGTCTCCGACGCCTGAGGA AAAGGAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100084:67..576+

>mRNA_M-pyrifera_M_contig100084.19.1 ID=mRNA_M-pyrifera_M_contig100084.19.1|Name=mRNA_M-pyrifera_M_contig100084.19.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig100084:67..576+ (Macrocystis pyrifera P11B4 male)
CTTGCATGGGAGGGTGTTAAGGTGAAGGCGCTCAACACTGTGTCCACCGT
TCGCCATCCTGAACTGTCGGTGCTGAGCTCCCAACCATATATGGGCGGCG
CTGAGGTGGCAGTGGAGTCGCTTCCTCCTCTCCAGCTCCTCCTCTTTTGG
TTCAACCATCACCTCGAGATGGCGGCACACAGCGAGAGGCGCCTGGAAGG
TTTCGGCGCCGACCTCTCTGACGGTGTTCTTTATTTGGTGCTTGTGAGCG
AACTCTCTCCCCATTTGAAGAACACTGAGGAAGAGCAGAGGAGTGAGAAG
GAGAGAGCGCTCTCTTTCGTGGCCCTCTCTTCTCGTCAGAGAGTCTCTCA
TGCACTGGAGATCATGAGAGAGATGGGTATCAACGGCAATTTCTCTGTTG
ACTCGATTCTCAATGGAAGCGAGAGAGTTAACACTGTGCTCTGCTCGAGG
CTCATGGACCTCTGCTCGGGTCTCAGGGCAAAGTCTCCGACGCCTGAGGA
AAAGGAAATCCTTGCATGGGAGGGTGTTAAGGTGAAGGCGCTCAACACTG
TGTCCACCGTTCGCCATCCTGAACTGTCGGTGCTGAGCTCCCAACCATAT
ATGGGCGGCGCTGAGGTGGCAGTGGAGTCGCTTCCTCCTCTCCAGCTCCT
CCTCTTTTGGTTCAACCATCACCTCGAGATGGCGGCACACAGCGAGAGGC
GCCTGGAAGGTTTCGGCGCCGACCTCTCTGACGGTGTTCTTTATTTGGTG
CTTGTGAGCGAACTCTCTCCCCATTTGAAGAACACTGAGGAAGAGCAGAG
GAGTGAGAAGGAGAGAGCGCTCTCTTTCGTGGCCCTCTCTTCTCGTCAGA
GAGTCTCTCATGCACTGGAGATCATGAGAGAGATGGGTATCAACGGCAAT
TTCTCTGTTGACTCGATTCTCAATGGAAGCGAGAGAGTTAACACTGTGCT
CTGCTCGAGGCTCATGGACCTCTGCTCGGGTCTCAGGGCAAAGTCTCCGA
CGCCTGAGGAAAAGGAAATC
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