mRNA_M-pyrifera_M_contig81226.18997.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81226.18997.1
Unique NamemRNA_M-pyrifera_M_contig81226.18997.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A6H5LD30_9PHAE (Vps54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD30_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.330e-31
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            +VFNSR+TQLVLGAGAIHSTAKLKSISAKHLALC QS+ LVRS++P+LKAAL+TRLPQKHHLLLAQMDAV
Sbjct:   28 RVFNSRATQLVLGAGAIHSTAKLKSISAKHLALCSQSLGLVRSLIPFLKAALSTRLPQKHHLLLAQMDAV 97
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BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7R9ZHA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHA6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.360e-18
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FN R+T LVLGAGAIHS A+LKSI+AKHLAL  Q +DL+ +++P+++AAL  +LP K+H LL  +D +
Sbjct:   62 RLFNQRTTHLVLGAGAIHSAARLKSINAKHLALVTQCLDLIAAILPHVRAALMAQLPSKNHALLVDLDRI 131
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BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7S2NWP7_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWP7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FNSR+TQLVLGAGAIHSTAKLKSI+AKHLAL  Q + ++ S++P+++AAL  +LP K H LLA +D V
Sbjct:  738 RLFNSRTTQLVLGAGAIHSTAKLKSINAKHLALVSQCLGMLTSILPHVRAALMAQLPTKQHTLLADLDRV 807
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7S2FL57_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.740e-18
Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FN+R+TQLVL AGAIHSTA+L  I+AKHLAL CQ + LV +++P+++A+L+ +LP KHHLLL+ MD V
Sbjct:  253 RLFNTRATQLVLLAGAIHSTARLTKITAKHLALTCQCLGLVMALIPHVRASLSAQLPPKHHLLLSDMDRV 322
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BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.780e-18
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALA 192
            +VFNSR+TQLVLGAGAIHSTAKLKSISAKHLALC QS+ LVRS++P+LKAAL+
Sbjct:  849 RVFNSRATQLVLGAGAIHSTAKLKSISAKHLALCSQSLGLVRSLIPFLKAALS 901
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7S0CPJ2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CPJ2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-17
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FNSR++QLVLGAGAIHS+AKLKSI+AKHLAL  QS+ LV  ++P+++AAL  +LP K H LL ++D V
Sbjct:  112 RIFNSRTSQLVLGAGAIHSSAKLKSINAKHLALVTQSLGLVIRILPHVRAALMAQLPPKQHTLLTELDKV 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7S4IYI4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IYI4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.680e-17
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FN RSTQLVLGAGAIHS A+LKSI+AKHLAL  Q +DLV +++P+++AAL  +LP K+H LL  +D +
Sbjct:  211 RLFNQRSTQLVLGAGAIHSAARLKSINAKHLALVTQCLDLVVAILPHVRAALMAQLPSKNHALLVDLDKI 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7S3QB81_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QB81_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.730e-17
Identity = 41/70 (58.57%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FNSR+TQLVLGAGAIHS+A+LKSI+AKHLAL  Q + +V+S++P+++AAL  +LP K H LL  +D +
Sbjct:  913 RLFNSRATQLVLGAGAIHSSARLKSINAKHLALVTQCVGVVKSILPHIRAALMAQLPNKQHTLLLDLDKI 982
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A7S2S5D4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.750e-17
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            ++FNSR+TQLVL AGAIHS A+L  I+AKHLAL  Q + LV +++P+++AAL+ +LP KHHLLLA +D V
Sbjct:  244 RLFNSRATQLVLQAGAIHSAARLTKITAKHLALTSQCLGLVMALLPHIRAALSAQLPPKHHLLLADLDRV 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.210e-17
Identity = 40/70 (57.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   34 QVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSIDLVRSMMPYLKAALATRLPQKHHLLLAQMDAV 243
            +++N+R+ QLVLGAGAI S ++L+SISAKHLALC  S+ LVR+++P+++AA A  LP+KH LLL +M+ V
Sbjct:  776 RLYNARTMQLVLGAGAIQSASRLRSISAKHLALCAHSLGLVRALVPHMRAAFAAHLPRKHQLLLVEMERV 845
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81226.18997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD30_9PHAE9.330e-3187.14Vps54 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7R9ZHA6_9STRA2.360e-1855.71Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2NWP7_9STRA3.630e-1862.86Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S2FL57_9STRA5.740e-1860.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G0A0_ECTSI6.780e-1883.02Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S0CPJ2_9STRA1.600e-1761.43Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S4IYI4_9STRA1.680e-1760.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3QB81_9STRA1.730e-1758.57Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S2S5D4_9STRA2.750e-1760.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YJU9_9STRA3.210e-1757.14Vacuolar protein sorting-associated protein 54 (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81226contigM-pyrifera_M_contig81226:631..873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7G0A0
Preferred nameVPS54
KEGG koko:K10357,ko:K17600
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.Vacuolar protein sorting-associated protein
EggNOG OGsKOG2115@1,KOG2115@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.2827563-CDS-M-pyrifera_M_contig81226:630..8731622816718.2827563-CDS-M-pyrifera_M_contig81226:630..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81226 631..873 -
1692278138.2287397-CDS-M-pyrifera_M_contig81226:630..8731692278138.2287397-CDS-M-pyrifera_M_contig81226:630..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81226 631..873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81226.18997.1prot_M-pyrifera_M_contig81226.18997.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81226 631..873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81226.18997.1

>prot_M-pyrifera_M_contig81226.18997.1 ID=prot_M-pyrifera_M_contig81226.18997.1|Name=mRNA_M-pyrifera_M_contig81226.18997.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
SPLAALTQTQTQVFNSRSTQLVLGAGAIHSTAKLKSISAKHLALCCQSID
LVRSMMPYLKAALATRLPQKHHLLLAQMDAV
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mRNA from alignment at M-pyrifera_M_contig81226:631..873-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81226.18997.1 ID=mRNA_M-pyrifera_M_contig81226.18997.1|Name=mRNA_M-pyrifera_M_contig81226.18997.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig81226:631..873- (Macrocystis pyrifera P11B4 male)
TCCCCCCTCGCCGCTCTAACCCAAACCCAAACCCAGGTGTTCAACTCTCG
CTCAACGCAGCTGGTGCTGGGGGCGGGTGCCATCCACTCCACCGCCAAGC
TCAAGTCCATATCGGCGAAGCACCTGGCGCTGTGCTGTCAGTCTATTGAC
CTGGTTCGATCCATGATGCCGTACCTTAAGGCGGCTCTTGCGACTCGGCT
GCCCCAGAAGCACCACCTTCTTCTCGCGCAGATGGATGCCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81226:631..873-

>mRNA_M-pyrifera_M_contig81226.18997.1 ID=mRNA_M-pyrifera_M_contig81226.18997.1|Name=mRNA_M-pyrifera_M_contig81226.18997.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig81226:631..873- (Macrocystis pyrifera P11B4 male)
TCCCCCCTCGCCGCTCTAACCCAAACCCAAACCCAGGTGTTCAACTCTCG
CTCAACGCAGCTGGTGCTGGGGGCGGGTGCCATCCACTCCACCGCCAAGC
TCAAGTCCATATCGGCGAAGCACCTGGCGCTGTGCTGTCAGTCTATTGAC
CTGGTTCGATCCATGATGCCGTACCTTAAGGCGGCTCTTGCGACTCGGCT
GCCCCAGAAGCACCACCTTCTTCTCGCGCAGATGGATGCCGTGTCCCCCC
TCGCCGCTCTAACCCAAACCCAAACCCAGGTGTTCAACTCTCGCTCAACG
CAGCTGGTGCTGGGGGCGGGTGCCATCCACTCCACCGCCAAGCTCAAGTC
CATATCGGCGAAGCACCTGGCGCTGTGCTGTCAGTCTATTGACCTGGTTC
GATCCATGATGCCGTACCTTAAGGCGGCTCTTGCGACTCGGCTGCCCCAG
AAGCACCACCTTCTTCTCGCGCAGATGGATGCCGTG
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