mRNA_M-pyrifera_M_contig81014.18948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81014.18948.1
Unique NamemRNA_M-pyrifera_M_contig81014.18948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A2E0WY26_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0WY26_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 6.550e-67
Identity = 122/268 (45.52%), Postives = 158/268 (58.96%), Query Frame = 1
Query:    1 IYGQIANYVVPDPSGFDGP-WEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVPPGARVPLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFY-EFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVL 798
            IY QIA +    P GF G  WE++R F YA S G+ +PGSDT+I  F CPSS + PL  P       A GLAT SYKGS+G G RG+  R D         +  DDG     I + +  +++++F+ I DGLSNTIA GE+AYAIE    G   RWP+W G+PG  +DEV+L+ TEF  NC     K F+ E  DP V  A +KL             +R DVNDC+YGWH GG++    DGSV F+ ED+D RT MYLG+  DG+++
Sbjct:  113 IYDQIAAF---KPPGFAGSAWEFYRPFEYAASLGQVIPGSDTIIEPFVCPSSAL-PLTVPNDVTNELAVGLATTSYKGSKGVGRRGVLVRPDPKDVGRVRTYKPDDGGAA--IEVEQPSFTQLKFKQIPDGLSNTIAAGEAAYAIETNTYGA--RWPMWIGTPGGDWDEVMLYKTEFTLNCSFGTAKEFWKENVDPEVTLAAEKLHSYLDDR------NRSDVNDCAYGWHPGGVMCVFVDGSVHFLSEDLDHRTHMYLGNPDDGQII 366          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A5C5V782_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5V782_9BACT)

HSP 1 Score: 219 bits (559), Expect = 1.810e-66
Identity = 120/264 (45.45%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    4 YGQIANYVVPDPSGFDGPWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVPPGARVPLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEV 795
            Y  IA +V P  +     WEY+  F YA S G  +P SD  I AFTCPSSD+  LVP G        GLAT SYKGS+G G RG+  R D A      R  +DDG QP  + I +    + +F+HI+DGLS T+A  E+AYAIE+ +TG   RWPIW G+PG  +DEVVL+ TE++ NC     K ++  +DP V AA ++L     +   NP     DVNDC++GWH GG++    DGSV F+  D++ R  +YLGD  DGEV
Sbjct:  100 YDLIAQHVPPGST--KTAWEYYFPFQYASSQGRVIPTSDQSIDAFTCPSSDVPALVP-GDVDKAVVRGLATTSYKGSKGAGRRGVLVRPDTADIGRVRRIRLDDGQQPAILEIEQPGRRRYKFRHITDGLSKTVAAAEAAYAIEW-QTG-KQRWPIWIGTPGFDWDEVVLYKTEYSINCGFGDVKEYWPISDPDVQAARNELSSYNDSR--NPS----DVNDCAFGWHPGGVLCVFVDGSVHFLARDLEHRVHIYLGDPLDGEV 352          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A517MQT3_9BACT (Uncharacterized protein n=1 Tax=Adhaeretor mobilis TaxID=1930276 RepID=A0A517MQT3_9BACT)

HSP 1 Score: 209 bits (533), Expect = 2.480e-62
Identity = 114/265 (43.02%), Postives = 155/265 (58.49%), Query Frame = 1
Query:   34 DPSG-FDGPWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVPPGARVPLA--AEGLATCSYKGSQGTGGRGLFFRGDL--AANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFY-EFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVLPELD 810
            DP G  + PW+ + +F  A S G  +P  D  I +F CPS+D+   VP       A  A G AT SYKGS+G G +G+  R D   AA     R+   DG  P  + I +  Y+++ F+ ISDGLSNTIA  E AYAIE  + G   RWP+W G+PG  +DEV+L+ TEF+ NCE  G KA + +  DPSV AA  KL     +   +      D+NDC++GWH GG++    DGSV F+ ED+D RT MYLG+ +D +++  LD
Sbjct:  121 DPQGNSESPWKNYEIFKDAYSVGMFIPSGDVPIPSFICPSADLPLNVPESTSSTPARLASGYATTSYKGSKGVGRKGVLVRPDPKDAAAGRLRRYRPGDGGTPIELKITQPAYTQISFKQISDGLSNTIAAAEGAYAIETNDFG--TRWPMWIGTPGGDWDEVMLYKTEFSLNCEFSGIKALWSQNEDPSVEAAFGKLDNYPDSRAGS------DINDCAFGWHPGGVMCVFVDGSVHFLNEDLDHRTHMYLGNPSDDQIITGLD 377          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A5C6A0T9_9BACT (Uncharacterized protein n=1 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6A0T9_9BACT)

HSP 1 Score: 194 bits (493), Expect = 1.630e-56
Identity = 107/257 (41.63%), Postives = 143/257 (55.64%), Query Frame = 1
Query:   28 VPDPSGFDGPWEYFRLFSYAQSTGEK--LPGSDTVIAAFTCPSSDMEPLVPPGARVPLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGE 792
            VP  +     WEY+  F+YA S G    +P SD  I A  CPSS +  +VP     P    GLAT SYKGS+G G  G+  R D +       + +DDG+     ++ + +  + +F+ ++DGLS T+ V E+AY I+ G  G   RWP+W  SPG  +DE  L+ T+F   CEL   +A+YE  DPS  A   KL         N      DVNDC+YGWH GG++A L DGSV F+  D+DLRT +YLG  ADGE
Sbjct:  113 VPPFTNHANAWEYYDHFNYADSLGPPGIIPTSDQQIPALVCPSSALPTVVPETVN-PEVVRGLATMSYKGSKGVGRAGVLVRPDPSDVGRVRTYKLDDGST---FSVTQPRRVRYKFKDVTDGLSKTVVVCEAAYGIDDGSFG--PRWPVWVASPGLDWDEAALYKTDFFIQCELSDTRAYYEANDPSNVATRGKLEAY------NDSRQPADVNDCAYGWHPGGVLAVLLDGSVQFLSRDLDLRTHIYLGHPADGE 357          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A517TGP0_9BACT (Type II secretion system protein G n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TGP0_9BACT)

HSP 1 Score: 134 bits (336), Expect = 1.840e-33
Identity = 94/263 (35.74%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   34 DPSGFDG-PWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVPPGA---RVPLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTLRFLMD---DGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQ-LRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVL 798
            D   F+G PW+              +PG DTVI+AF CPS D+   VP G    +  L   G  +  YKGS+G G RGLF R   A   N  +F  D   DG   +     +R+Y+++  +H++DG S TIA GE+AY  E      +  +P+W G+  S  D  VLF T+   NC L G + F            +K RQ L   +G++         DC+Y WH GG      DGSV F+ ED++ R +  LGD  DG VL
Sbjct:  114 DHPEFNGDPWKPLIFRKTWTGDPTPIPGGDTVISAFLCPSVDLPKTVPEGPYFNQPLLITSGYGSSHYKGSRGYGDRGLFLRRAEALLTN--KFFADYDGDGVDEEH---EKRRYNRIAIRHVADGTSKTIAFGEAAYFTE------STDFPLWLGT--SFEDGAVLFKTQDVINCNLGGSRPF---------PLNEKDRQQLPDGSGTD---------DCAYSWHPGGAYFAFVDGSVHFLTEDLEDRVYWMLGDRIDGVVL 345          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A5C6A7G1_9BACT (Putative major pilin subunit n=1 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6A7G1_9BACT)

HSP 1 Score: 134 bits (336), Expect = 1.910e-33
Identity = 93/276 (33.70%), Postives = 124/276 (44.93%), Query Frame = 1
Query:    4 YGQIANYVVPDPSGFDGPWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVP------PGARVPLAAEGLATCSYKGSQGTGGRGLFFRGD--LAANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVLPEL 807
            Y Q+ N  +    G   PW+       A +  E +PG+DT++  F CPS  +   +P      PGA          T  YKGS+G    G+F R +  L+ N         DG   D   I +R  S++R   ++DG S TIA GESAY ++         +P W G+     D  VLF T    NC L     F          + + + QL   +GS+         DCSY WH GG   G  DGSV F+ ED+DLR F  LGD  DGE+  EL
Sbjct:  104 YDQLVNNGITSHDG--DPWKPGIYVQAALAGVETIPGTDTIVPGFLCPSVSLPERMPETSYFAPGAAGKDPRYNAGTIHYKGSRGYCDNGIFLRVEEMLSTNECLTADYNGDGQLND--RIEKRSTSRIRLTDVTDGTSKTIATGESAYFVD------VSSFPTWAGA--FYEDGAVLFKTRDVINCRLSSSLQF--------PLSEEVISQLPGGSGSD---------DCSYSWHPGGAQFGFVDGSVHFLTEDLDLRVFQLLGDRRDGEIFSEL 350          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A517U0C3_9BACT (Uncharacterized protein n=1 Tax=Lacipirellula limnantheis TaxID=2528024 RepID=A0A517U0C3_9BACT)

HSP 1 Score: 130 bits (328), Expect = 2.690e-32
Identity = 89/264 (33.71%), Postives = 131/264 (49.62%), Query Frame = 1
Query:   40 SGFDG-PWEYFRLFSYAQSTGEK-LPGSDTVIAAFTCPSSDMEPLVPPGARV----PLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTL-RFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVLPELD 810
            +G+DG PW+   +F  A + G + LPG D  +A F CPS+D+   VP    +    P A  G A   YKGS+G    G+F+R        T  + +  DG     +T+      ++R   ++DG SNTIAVGE+AY   +        +P+W GS     D   LF T+   NC + G  A Y   +  V         LR   GS         +DC++ WH  G+  G  DGSV F+ E++++RTF+ LG+  DGEV+ +L+
Sbjct:  114 AGYDGNPWKP-GIFRAAHAAGRRPLPGGDAELAMFRCPSADLPTHVPDADPILGAGPFATSGYAVSHYKGSRGYCDLGMFWRVQEGLKSGTCYQDITGDGVID--VTVKDPDLRRIRIVDVTDGTSNTIAVGEAAYVPSF------EAFPMWLGSWRE--DGTTLFKTQDPVNCNIGG--AGYPLTENDV---------LRLPGGSG-------TDDCTFSWHPAGVHFGFVDGSVRFLSEELEVRTFLLLGNRIDGEVIGQLN 348          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A518DIM7_9BACT (Type II secretion system protein G n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DIM7_9BACT)

HSP 1 Score: 127 bits (319), Expect = 5.270e-31
Identity = 91/275 (33.09%), Postives = 127/275 (46.18%), Query Frame = 1
Query:    4 YGQIANYVVPDPSGFDG-PWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVPPGARVPLAAEG------LATCSYKGSQGTGGRGLFFRGDLAANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVLPEL 807
            Y ++ N  VP   G++G PW+ +     A +  E LPG+DTV+  F CPS+D+   +P  A    A +G        T  YKGS+G    G+F R + A    +     D     + +   ++    VR   + DG S TI+VGESAY +          +P W G+     D  V+F T    NC L G + F          +    + L S +GS+         DCSY WH GG   G  DGSV F+ ED+D+R F  LGD  D +V  EL
Sbjct:  103 YDRLVNNGVP---GYNGDPWKPYIFVQAAMAGVETLPGADTVVPTFLCPSTDLPTSMPASAYF-NAGDGKDLRYAFGTTHYKGSRGFCDNGMFLRTEEALASGSCSADYDGDGTLEKVE--KKPKRSVRITDVLDGTSKTISVGESAYFVSL------TSFPTWAGA--FYEDGAVMFKTRDPVNCNLGGPRQF--------PLSDQDRKYLPSGSGSD---------DCSYSWHPGGAQFGFVDGSVHFLTEDLDVRIFQLLGDRRDEQVYGEL 346          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A518K3R2_9BACT (Putative major pilin subunit n=1 Tax=Botrimarina mediterranea TaxID=2528022 RepID=A0A518K3R2_9BACT)

HSP 1 Score: 122 bits (305), Expect = 6.480e-29
Identity = 87/272 (31.99%), Postives = 122/272 (44.85%), Query Frame = 1
Query:    4 YGQIANYVVPDPSGFDGPWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPSSDMEPLVP------PGARVPLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPN--TLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEV 795
            Y ++ N  +P   G   PW+       A +  E LPG++TV++ F CPS  +   +P      PG        G  T  YKGS+G    G+F R +   +    T      DG   D   + ++  S++R   ++DG S TI++GESAY ++         +P W G+     D  VLF T    NC L     F          + + L  L   +GS+         DCSY WH GG   G  DGSV F+ ED+D R +  LGD  DGEV
Sbjct:  108 YDRLVNNGLPTHDG--DPWKPGIFVQAALAGIETLPGTETVVSGFLCPSVSLPETMPETSYFSPGTPGKDPRFGGGTIHYKGSRGYCDNGIFLRYEEMRSSTICTTADYNGDGVLND--NVEKKSVSRIRMTDVTDGTSKTISIGESAYFVDVAS------FPTWAGA--FFEDGSVLFKTRDVINCRLGSSLQF--------PLSAEVLAILPGGSGSD---------DCSYSWHPGGAFFGFVDGSVHFLTEDLDQRVYQLLGDRRDGEV 350          
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Match: A0A5C5ZMY1_9BACT (Type II secretion system protein G n=2 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZMY1_9BACT)

HSP 1 Score: 114 bits (284), Expect = 8.630e-26
Identity = 85/275 (30.91%), Postives = 121/275 (44.00%), Query Frame = 1
Query:    4 YGQIANYVVPDPSGFDGPWEYFRLFSYAQS-TGEKLPGSDTVIAAFTCPSSDMEPLVPPGARV------PLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTLRFLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETGGTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAVDKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDIDLRTFMYLGDSADGEVLPEL 807
            Y  +AN  +   SG   PW+ F     A +     LPG+DTVI+ F CP++ +    P  A        PL   G  T  YK S+G   RG++ R + A N  +  F   +G   D + I++  + ++R  +++DG S TIA GE+AY I++G       +P+W GS     D  VLF T    NC L    +F            + L  L               +DC+Y  H GG      DGSV F+ +  D R +  LGD  D E    L
Sbjct:  130 YDALANNGI---SGLKDPWKPFFFVKIALAGASNPLPGADTVISTFLCPTAVLPERKPEAAYFGNSVSGPLNTSGYGTSHYKASRGFCDRGMYMRKEEALNAGSC-FADYNGDDVDEL-ISKEPFKQIRIANVTDGTSKTIAAGEAAYFIDHGS------FPVWIGSDFE--DGAVLFKTLDVINCNLPPGLSF---------PLAEDLEDL------------VPNDDCAYSAHQGGAFFAFVDGSVHFLTDATDQRIYRLLGDRMDSEAFDAL 370          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81014.18948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0WY26_9PLAN6.550e-6745.52Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A5C5V782_9BACT1.810e-6645.45Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
A0A517MQT3_9BACT2.480e-6243.02Uncharacterized protein n=1 Tax=Adhaeretor mobilis... [more]
A0A5C6A0T9_9BACT1.630e-5641.63Uncharacterized protein n=1 Tax=Botrimarina collia... [more]
A0A517TGP0_9BACT1.840e-3335.74Type II secretion system protein G n=1 Tax=Plancto... [more]
A0A5C6A7G1_9BACT1.910e-3333.70Putative major pilin subunit n=1 Tax=Botrimarina c... [more]
A0A517U0C3_9BACT2.690e-3233.71Uncharacterized protein n=1 Tax=Lacipirellula limn... [more]
A0A518DIM7_9BACT5.270e-3133.09Type II secretion system protein G n=1 Tax=Pirellu... [more]
A0A518K3R2_9BACT6.480e-2931.99Putative major pilin subunit n=1 Tax=Botrimarina m... [more]
A0A5C5ZMY1_9BACT8.630e-2630.91Type II secretion system protein G n=2 Tax=Pseudob... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81014contigM-pyrifera_M_contig81014:9..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.4
Seed ortholog evalue2.8e-18
Seed eggNOG ortholog314230.DSM3645_18726
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:N_methyl_2
EggNOG OGs2J519@203682,COG4968@1,COG4968@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size813
Cds size813
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.4200814-CDS-M-pyrifera_M_contig81014:8..8211622816715.4200814-CDS-M-pyrifera_M_contig81014:8..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81014 9..821 +
1692278136.486469-CDS-M-pyrifera_M_contig81014:8..8211692278136.486469-CDS-M-pyrifera_M_contig81014:8..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81014 9..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81014.18948.1prot_M-pyrifera_M_contig81014.18948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81014 9..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81014.18948.1

>prot_M-pyrifera_M_contig81014.18948.1 ID=prot_M-pyrifera_M_contig81014.18948.1|Name=mRNA_M-pyrifera_M_contig81014.18948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=271bp
IYGQIANYVVPDPSGFDGPWEYFRLFSYAQSTGEKLPGSDTVIAAFTCPS
SDMEPLVPPGARVPLAAEGLATCSYKGSQGTGGRGLFFRGDLAANPNTLR
FLMDDGAQPDPITIARRKYSKVRFQHISDGLSNTIAVGESAYAIEYGETG
GTHRWPIWYGSPGSAYDEVVLFNTEFAPNCELQGKKAFYEFADPSVGAAV
DKLRQLRSATGSNPGWSRFDVNDCSYGWHVGGIVAGLADGSVSFIKEDID
LRTFMYLGDSADGEVLPELD*
back to top

mRNA from alignment at M-pyrifera_M_contig81014:9..821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81014.18948.1 ID=mRNA_M-pyrifera_M_contig81014.18948.1|Name=mRNA_M-pyrifera_M_contig81014.18948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=813bp|location=Sequence derived from alignment at M-pyrifera_M_contig81014:9..821+ (Macrocystis pyrifera P11B4 male)
ATTTACGGCCAGATCGCAAATTACGTCGTCCCTGATCCGAGCGGGTTCGA TGGGCCATGGGAATACTTTCGTTTGTTCAGCTACGCGCAGAGCACGGGCG AAAAACTACCCGGCTCGGACACGGTTATCGCGGCATTCACCTGCCCCTCA TCCGACATGGAACCTCTAGTCCCTCCTGGGGCAAGAGTGCCTTTGGCCGC AGAGGGCTTGGCAACCTGCTCATACAAGGGATCGCAAGGTACTGGAGGAC GCGGACTCTTCTTCCGCGGAGACCTAGCAGCCAATCCAAACACACTTCGG TTCTTGATGGACGACGGAGCACAGCCAGACCCCATCACGATCGCTCGTCG AAAGTACTCCAAGGTACGTTTCCAGCATATTTCTGACGGGCTTTCAAATA CAATCGCTGTCGGCGAATCGGCCTACGCGATTGAATACGGAGAAACTGGA GGCACGCATCGCTGGCCAATCTGGTATGGCAGCCCGGGCTCCGCTTACGA TGAGGTCGTTCTCTTCAACACCGAGTTTGCACCAAACTGCGAGCTGCAGG GAAAGAAGGCGTTCTACGAGTTCGCCGACCCTTCGGTTGGGGCAGCTGTT GACAAGCTCAGGCAGTTGCGGTCCGCAACAGGATCTAATCCAGGTTGGAG TCGATTTGATGTCAACGACTGTTCTTACGGCTGGCACGTCGGTGGCATCG TAGCCGGGCTAGCAGATGGCTCGGTCAGTTTTATCAAGGAAGATATCGAC CTGCGCACGTTTATGTATCTGGGTGATTCCGCAGACGGCGAAGTTCTTCC GGAGTTGGACTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81014:9..821+

>mRNA_M-pyrifera_M_contig81014.18948.1 ID=mRNA_M-pyrifera_M_contig81014.18948.1|Name=mRNA_M-pyrifera_M_contig81014.18948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1626bp|location=Sequence derived from alignment at M-pyrifera_M_contig81014:9..821+ (Macrocystis pyrifera P11B4 male)
ATTTACGGCCAGATCGCAAATTACGTCGTCCCTGATCCGAGCGGGTTCGA
TGGGCCATGGGAATACTTTCGTTTGTTCAGCTACGCGCAGAGCACGGGCG
AAAAACTACCCGGCTCGGACACGGTTATCGCGGCATTCACCTGCCCCTCA
TCCGACATGGAACCTCTAGTCCCTCCTGGGGCAAGAGTGCCTTTGGCCGC
AGAGGGCTTGGCAACCTGCTCATACAAGGGATCGCAAGGTACTGGAGGAC
GCGGACTCTTCTTCCGCGGAGACCTAGCAGCCAATCCAAACACACTTCGG
TTCTTGATGGACGACGGAGCACAGCCAGACCCCATCACGATCGCTCGTCG
AAAGTACTCCAAGGTACGTTTCCAGCATATTTCTGACGGGCTTTCAAATA
CAATCGCTGTCGGCGAATCGGCCTACGCGATTGAATACGGAGAAACTGGA
GGCACGCATCGCTGGCCAATCTGGTATGGCAGCCCGGGCTCCGCTTACGA
TGAGGTCGTTCTCTTCAACACCGAGTTTGCACCAAACTGCGAGCTGCAGG
GAAAGAAGGCGTTCTACGAGTTCGCCGACCCTTCGGTTGGGGCAGCTGTT
GACAAGCTCAGGCAGTTGCGGTCCGCAACAGGATCTAATCCAGGTTGGAG
TCGATTTGATGTCAACGACTGTTCTTACGGCTGGCACGTCGGTGGCATCG
TAGCCGGGCTAGCAGATGGCTCGGTCAGTTTTATCAAGGAAGATATCGAC
CTGCGCACGTTTATGTATCTGGGTGATTCCGCAGACGGCGAAGTTCTTCC
GGAGTTGGACTAAATTTACGGCCAGATCGCAAATTACGTCGTCCCTGATC
CGAGCGGGTTCGATGGGCCATGGGAATACTTTCGTTTGTTCAGCTACGCG
CAGAGCACGGGCGAAAAACTACCCGGCTCGGACACGGTTATCGCGGCATT
CACCTGCCCCTCATCCGACATGGAACCTCTAGTCCCTCCTGGGGCAAGAG
TGCCTTTGGCCGCAGAGGGCTTGGCAACCTGCTCATACAAGGGATCGCAA
GGTACTGGAGGACGCGGACTCTTCTTCCGCGGAGACCTAGCAGCCAATCC
AAACACACTTCGGTTCTTGATGGACGACGGAGCACAGCCAGACCCCATCA
CGATCGCTCGTCGAAAGTACTCCAAGGTACGTTTCCAGCATATTTCTGAC
GGGCTTTCAAATACAATCGCTGTCGGCGAATCGGCCTACGCGATTGAATA
CGGAGAAACTGGAGGCACGCATCGCTGGCCAATCTGGTATGGCAGCCCGG
GCTCCGCTTACGATGAGGTCGTTCTCTTCAACACCGAGTTTGCACCAAAC
TGCGAGCTGCAGGGAAAGAAGGCGTTCTACGAGTTCGCCGACCCTTCGGT
TGGGGCAGCTGTTGACAAGCTCAGGCAGTTGCGGTCCGCAACAGGATCTA
ATCCAGGTTGGAGTCGATTTGATGTCAACGACTGTTCTTACGGCTGGCAC
GTCGGTGGCATCGTAGCCGGGCTAGCAGATGGCTCGGTCAGTTTTATCAA
GGAAGATATCGACCTGCGCACGTTTATGTATCTGGGTGATTCCGCAGACG
GCGAAGTTCTTCCGGAGTTGGACTAA
back to top